Rmu_sc0004343.1_g000020

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004343.1
OG0006929
Physical Location & Seq
Forward (+)
70160 .. 71134
975 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 975 bp
atgtcgtcttcaagacccagtcactcatccagcaattcagggagatcaaggcacactgctagagttattgctcagacaactgtagatgcaaagcttcatgcagattttgaggagtcgggcagttcctttgactactcgagctcagtgcgtgttagcagttcagttgctggggatcaacaacctaggtctgacaaagtgaccactgcttatctccatcacatacagaaagggaagttgatccagccatttggctgcttgctagccttagatgacaaaactttcagggtcattgcatacagtgagaatgcccctgaaatgctgactatggttagtcatgccgtcccaagtgttggggaccacccagttcttggcataggaacagatgtgagaacaattttcacaggccctagtgcctctgcattgcataaggccctcgggttcggggaggtttctctcttaaatcccatcttagtccattgcaagtcatctggaaagcctttctatgctatagtccaccgggtaacaggtagcctggtcattgattttgaaccggtgaagccttatgaagtccccatgactgctgctggagctctgcaatcatacaaacttgcagccaaagcaattgcacgattgcagtctttgcctagtgggagcctggagaggctttgtgatacaatggttcaagaggtttttgagctcactggttatgacagggtgatggcctataaatttcatgatgatgatcatggggaagttattgcagagcttacgaagcctggcctggagccatatctgggtttgcattatccatccactgatatacctcaagcttcacggttcctgtttatgaagaataaggtccgtatgattgttgactgtcgtgctaaaaatgtcaaggtccttcaagatgagaagcttcctttggaatttcttggatgtcgttgggtggacccagttgggaattttgctttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009791 GO:0009881 GO:0009883 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010018 GO:0010114 GO:0010161 GO:0010201 GO:0010203 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016301 GO:0016310 GO:0016604 GO:0016740 GO:0016772 GO:0016773 GO:0017148 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031516 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046685 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051606 GO:0051716 GO:0055122 GO:0060089 GO:0060255 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0071491 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140096 GO:1901363 GO:1901564 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

324

Amino Acids

35.5

Weight (kDa)

7.22

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 69 - 185 4.3e-36 PAS fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 350, 368
AclWI GGATC 2 cut(s) 180, 232
AcsI RAATTY 3 cut(s) 728, 926, 961
AfiI CCNNNNNNNGG 3 cut(s) 350, 368, 794
AgeI ACCGGT 1 cut(s) 550
AgsI TTSAA 4 cut(s) 12, 548, 683, 905
AjnI CCWGG 4 cut(s) 531, 654, 775, 780
AjuI GAANNNNNNNTTGG 2 cut(s) 905, 937
AluBI AGCT 7 cut(s) 94, 141, 590, 697, 766, 830, 916
AluI AGCT 7 cut(s) 94, 141, 590, 697, 766, 830, 916
Alw21I GWGCWC 3 cut(s) 143, 592, 699
AlwI GGATC 2 cut(s) 180, 232
AlwNI CAGNNNCTG 1 cut(s) 167
Ama87I CYCGRG 2 cut(s) 136, 434
AoxI GGCC 4 cut(s) 403, 429, 720, 778
ApeKI GCWGC 3 cut(s) 252, 581, 611
ApoI RAATTY 3 cut(s) 728, 926, 961
AsiGI ACCGGT 1 cut(s) 550
AspA2I CCTAGG 1 cut(s) 182
AspS9I GGNCC 6 cut(s) 355, 404, 430, 859, 898, 949
AsuC2I CCSGG 1 cut(s) 518
AsuHPI GGTGA 2 cut(s) 565, 727
AsuNHI GCTAGC 1 cut(s) 259
AvaI CYCGRG 2 cut(s) 136, 434
AvaII GGWCC 4 cut(s) 355, 859, 898, 949
AvrII CCTAGG 1 cut(s) 182
BaeI ACNNNNGTAYC 2 cut(s) 663, 696
BanII GRGCYC 3 cut(s) 143, 592, 699
Bbv12I GWGCWC 3 cut(s) 143, 592, 699
BbvI GCAGC 3 cut(s) 239, 568, 623
BccI CCATC 4 cut(s) 222, 473, 712, 817
BceAI ACGGC 1 cut(s) 323
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 4 cut(s) 533, 656, 777, 782
BclI TGATCA 1 cut(s) 742
BcnI CCSGG 1 cut(s) 518
BfaI CTAG 5 cut(s) 60, 183, 260, 408, 645
BfmI CTRYAG 2 cut(s) 81, 507
BisI GCNGC 3 cut(s) 253, 582, 612
BlnI CCTAGG 1 cut(s) 182
BlsI GCNGC 3 cut(s) 254, 583, 613
Bme1390I CCNGG 5 cut(s) 518, 533, 656, 777, 782
Bme18I GGWCC 4 cut(s) 355, 859, 898, 949
BmeT110I CYCGRG 2 cut(s) 136, 434
BmgT120I GGNCC 6 cut(s) 355, 404, 430, 859, 898, 949
BmiI GGNNCC 5 cut(s) 356, 653, 786, 839, 951
BmrFI CCNGG 5 cut(s) 518, 533, 656, 777, 782
BmrI ACTGGG 3 cut(s) 12, 356, 947
BmsI GCATC 1 cut(s) 76
BmtI GCTAGC 1 cut(s) 263
BmuI ACTGGG 3 cut(s) 12, 356, 947
BpmI CTGGAG 3 cut(s) 606, 677, 803
BpuEI CTTGAG 1 cut(s) 810
BpuMI CCSGG 1 cut(s) 518
BsaBI GATNNNNATC 1 cut(s) 741
BsaJI CCNNGG 2 cut(s) 182, 433
BsaWI WCCGGW 1 cut(s) 550
Bsc4I CCNNNNNNNGG 3 cut(s) 350, 368, 794
Bse118I RCCGGY 1 cut(s) 550
Bse1I ACTGG 4 cut(s) 18, 362, 706, 953
Bse3DI GCAATG 3 cut(s) 288, 419, 475
Bse8I GATNNNNATC 1 cut(s) 741
BseBI CCWGG 4 cut(s) 533, 656, 777, 782
BseDI CCNNGG 2 cut(s) 182, 433
BseGI GGATG 3 cut(s) 26, 809, 941
BseJI GATNNNNATC 1 cut(s) 741
BseLI CCNNNNNNNGG 3 cut(s) 350, 368, 794
BseMI GCAATG 3 cut(s) 288, 419, 475
BseMII CTCAG 2 cut(s) 86, 156
BseNI ACTGG 4 cut(s) 18, 362, 706, 953
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 3 cut(s) 239, 568, 623
BseYI CCCAGC 1 cut(s) 167
BshFI GGCC 4 cut(s) 405, 431, 722, 780
BshTI ACCGGT 1 cut(s) 550
BsiHKAI GWGCWC 3 cut(s) 143, 592, 699
BsiHKCI CYCGRG 2 cut(s) 136, 434
BsiSI CCGG 2 cut(s) 517, 551
BslFI GGGAC 3 cut(s) 326, 368, 554
BslI CCNNNNNNNGG 3 cut(s) 350, 368, 794
BsmFI GGGAC 3 cut(s) 326, 368, 554
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 4 cut(s) 405, 431, 722, 780
BsoBI CYCGRG 2 cut(s) 136, 434
Bsp1286I GDGCHC 3 cut(s) 143, 592, 699
Bsp143I GATC 4 cut(s) 44, 172, 237, 742
BspANI GGCC 4 cut(s) 405, 431, 722, 780
BspCNI CTCAG 2 cut(s) 85, 155
BspHI TCATGA 1 cut(s) 733
BspLI GGNNCC 5 cut(s) 356, 653, 786, 839, 951
BspOI GCTAGC 1 cut(s) 263
BspPI GGATC 2 cut(s) 180, 232
BsrDI GCAATG 3 cut(s) 288, 419, 475
BsrFI RCCGGY 1 cut(s) 550
BsrI ACTGG 4 cut(s) 18, 362, 706, 953
BssAI RCCGGY 1 cut(s) 550
BssECI CCNNGG 2 cut(s) 182, 433
BssMI GATC 4 cut(s) 44, 172, 237, 742
BssT1I CCWWGG 1 cut(s) 182
Bst2UI CCWGG 4 cut(s) 533, 656, 777, 782
Bst4CI ACNGT 4 cut(s) 82, 299, 837, 878
BstAPI GCANNNNNTGC 1 cut(s) 640
BstC8I GCNNGC 2 cut(s) 257, 261
BstDEI CTNAG 4 cut(s) 72, 142, 265, 469
BstF5I GGATG 3 cut(s) 26, 809, 941
BstKTI GATC 4 cut(s) 47, 175, 240, 745
BstMBI GATC 4 cut(s) 44, 172, 237, 742
BstMWI GCNNNNNNNGC 4 cut(s) 587, 617, 640, 772
BstNI CCWGG 4 cut(s) 533, 656, 777, 782
BstSCI CCNGG 5 cut(s) 516, 531, 654, 775, 780
BstSFI CTRYAG 2 cut(s) 81, 507
BstV1I GCAGC 3 cut(s) 239, 568, 623
BstXI CCANNNNNNTGG 1 cut(s) 248
BsuRI GGCC 4 cut(s) 405, 431, 722, 780
BtsCI GGATG 3 cut(s) 26, 809, 941
BtsI GCAGTG 2 cut(s) 54, 201
BtsIMutI CAGTG 6 cut(s) 54, 150, 201, 304, 699, 813
Cac8I GCNNGC 2 cut(s) 257, 261
CaiI CAGNNNCTG 1 cut(s) 167
CciI TCATGA 1 cut(s) 733
Cfr10I RCCGGY 1 cut(s) 550
Cfr13I GGNCC 6 cut(s) 355, 404, 430, 859, 898, 949
CspAI ACCGGT 1 cut(s) 550
CviAII CATG 5 cut(s) 98, 335, 574, 734, 746
DdeI CTNAG 4 cut(s) 72, 142, 265, 469
DpnI GATC 4 cut(s) 46, 174, 239, 744
DpnII GATC 4 cut(s) 44, 172, 237, 742
Ecl136II GAGCTC 3 cut(s) 141, 590, 697
Eco130I CCWWGG 1 cut(s) 182
Eco24I GRGCYC 3 cut(s) 143, 592, 699
Eco47I GGWCC 4 cut(s) 355, 859, 898, 949
Eco53kI GAGCTC 3 cut(s) 141, 590, 697
Eco88I CYCGRG 2 cut(s) 136, 434
EcoICRI GAGCTC 3 cut(s) 141, 590, 697
EcoO109I RGGNCCY 3 cut(s) 404, 430, 898
EcoRII CCWGG 4 cut(s) 531, 654, 775, 780
EcoT14I CCWWGG 1 cut(s) 182
EcoT38I GRGCYC 3 cut(s) 143, 592, 699
ErhI CCWWGG 1 cut(s) 182
FaeI CATG 5 cut(s) 101, 338, 577, 737, 749
FaqI GGGAC 3 cut(s) 326, 368, 554
FatI CATG 5 cut(s) 97, 334, 573, 733, 745
FbaI TGATCA 1 cut(s) 742
Fnu4HI GCNGC 3 cut(s) 253, 582, 612
FokI GGATG 3 cut(s) 13, 796, 948
FriOI GRGCYC 3 cut(s) 143, 592, 699
Fsp4HI GCNGC 3 cut(s) 253, 582, 612
FspBI CTAG 5 cut(s) 60, 183, 260, 408, 645
GluI GCNGC 3 cut(s) 253, 582, 612
GsaI CCCAGC 1 cut(s) 171
GsuI CTGGAG 3 cut(s) 606, 677, 803
HaeIII GGCC 4 cut(s) 405, 431, 722, 780
HapII CCGG 2 cut(s) 517, 551
Hin1II CATG 5 cut(s) 101, 338, 577, 737, 749
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HindIII AAGCTT 3 cut(s) 92, 828, 914
HinfI GANTC 1 cut(s) 113
HpaII CCGG 2 cut(s) 517, 551
HphI GGTGA 2 cut(s) 565, 727
Hpy166II GTNNAC 3 cut(s) 514, 874, 949
Hpy188I TCNGA 2 cut(s) 75, 190
Hpy188III TCNNGA 5 cut(s) 12, 489, 683, 734, 905
Hpy8I GTNNAC 3 cut(s) 514, 874, 949
HpyAV CCTTC 1 cut(s) 911
HpyCH4III ACNGT 4 cut(s) 82, 299, 837, 878
HpyF10VI GCNNNNNNNGC 4 cut(s) 587, 617, 640, 772
HpyF3I CTNAG 4 cut(s) 72, 142, 265, 469
Hsp92II CATG 5 cut(s) 101, 338, 577, 737, 749
Ksp22I TGATCA 1 cut(s) 742
Kzo9I GATC 4 cut(s) 44, 172, 237, 742
LmnI GCTCC 3 cut(s) 587, 651, 784
Lsp1109I GCAGC 3 cut(s) 239, 568, 623
LweI GCATC 1 cut(s) 76
MaeI CTAG 5 cut(s) 60, 183, 260, 408, 645
MaeIII GTNAC 3 cut(s) 20, 196, 520
MalI GATC 4 cut(s) 46, 174, 239, 744
MboI GATC 4 cut(s) 44, 172, 237, 742
MboII GAAGA 1 cut(s) 862
MfeI CAATTG 1 cut(s) 621
MhlI GDGCHC 3 cut(s) 143, 592, 699
MluCI AATT 6 cut(s) 34, 393, 621, 728, 926, 961
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 7 cut(s) 103, 424, 439, 443, 654, 679, 834
MseI TTAA 1 cut(s) 458
MslI CAYNNNNRTG 1 cut(s) 738
MspI CCGG 2 cut(s) 517, 551
MspR9I CCNGG 5 cut(s) 518, 533, 656, 777, 782
MunI CAATTG 1 cut(s) 621
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 4 cut(s) 533, 656, 777, 782
MwoI GCNNNNNNNGC 4 cut(s) 587, 617, 640, 772
NciI CCSGG 1 cut(s) 518
NdeII GATC 4 cut(s) 44, 172, 237, 742
NheI GCTAGC 1 cut(s) 259
NlaIII CATG 5 cut(s) 101, 338, 577, 737, 749
NlaIV GGNNCC 5 cut(s) 356, 653, 786, 839, 951
NmuCI GTSAC 2 cut(s) 20, 196
PaeR7I CTCGAG 1 cut(s) 136
PagI TCATGA 1 cut(s) 733
PctI GAATGC 1 cut(s) 310
PflFI GACNNNGTC 1 cut(s) 18
PflMI CCANNNNNTGG 2 cut(s) 350, 368
PinAI ACCGGT 1 cut(s) 550
PkrI GCNGC 3 cut(s) 254, 583, 613
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PpuMI RGGWCCY 1 cut(s) 898
Psp124BI GAGCTC 3 cut(s) 143, 592, 699
Psp5II RGGWCCY 1 cut(s) 898
Psp6I CCWGG 4 cut(s) 531, 654, 775, 780
PspFI CCCAGC 1 cut(s) 167
PspGI CCWGG 4 cut(s) 531, 654, 775, 780
PspN4I GGNNCC 5 cut(s) 356, 653, 786, 839, 951
PspPI GGNCC 6 cut(s) 355, 404, 430, 859, 898, 949
PspPPI RGGWCCY 1 cut(s) 898
PspXI VCTCGAGB 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 167
PsyI GACNNNGTC 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 738
SacI GAGCTC 3 cut(s) 143, 592, 699
SaqAI TTAA 1 cut(s) 458
SatI GCNGC 3 cut(s) 253, 582, 612
Sau3AI GATC 4 cut(s) 44, 172, 237, 742
Sau96I GGNCC 6 cut(s) 355, 404, 430, 859, 898, 949
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 5 cut(s) 518, 533, 656, 777, 782
SduI GDGCHC 3 cut(s) 143, 592, 699
SfaNI GCATC 1 cut(s) 76
SfcI CTRYAG 2 cut(s) 81, 507
Sfr274I CTCGAG 1 cut(s) 136
SinI GGWCC 4 cut(s) 355, 859, 898, 949
SlaI CTCGAG 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 738
SmlI CTYRAG 2 cut(s) 136, 825
SmoI CTYRAG 2 cut(s) 136, 825
Sse9I AATT 6 cut(s) 34, 393, 621, 728, 926, 961
SspMI CTAG 5 cut(s) 60, 183, 260, 408, 645
SstI GAGCTC 3 cut(s) 143, 592, 699
StyD4I CCNGG 5 cut(s) 516, 531, 654, 775, 780
StyI CCWWGG 1 cut(s) 182
TaaI ACNGT 4 cut(s) 82, 299, 837, 878
TaqI TCGA 1 cut(s) 137
TasI AATT 6 cut(s) 34, 393, 621, 728, 926, 961
Tru1I TTAA 1 cut(s) 458
Tru9I TTAA 1 cut(s) 458
TscAI CASTG 6 cut(s) 61, 150, 208, 304, 706, 820
TseFI GTSAC 2 cut(s) 20, 196
TseI GCWGC 3 cut(s) 252, 581, 611
Tsp45I GTSAC 2 cut(s) 20, 196
TspDTI ATGAA 4 cut(s) 86, 579, 722, 863
TspGWI ACGGA 1 cut(s) 851
TspRI CASTG 6 cut(s) 61, 150, 208, 304, 706, 820
Tth111I GACNNNGTC 1 cut(s) 18
Van91I CCANNNNNTGG 2 cut(s) 350, 368
VpaK11BI GGWCC 4 cut(s) 355, 859, 898, 949
XapI RAATTY 3 cut(s) 728, 926, 961
XcmI CCANNNNNNNNNTGG 1 cut(s) 365
XhoI CTCGAG 1 cut(s) 136
XmaJI CCTAGG 1 cut(s) 182
XspI CTAG 5 cut(s) 60, 183, 260, 408, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.