Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004732.1

Orthogroup ID

OG0001713

Physical Location & Seq

Genomic Coordinates Reverse (-)

9609 .. 10667

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004732.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

atggaatggtccaaattgaagaatgtgaaggttctttatcttggaaggtggcacagcagggcaaaacatcacattgaactagttgacagcaagttcttggaagcgttggtgtttatgacacgtttgaggtttctcagccttcgaggaatatcggggatcatggagcttcctgattcattatgcaagcttgtttgtttgaagatcttggatcttggagcatgtcacaatctagaggtgattccgaaacaaataagcttgcttaagaagctcacacacttggatatgtccgagtgttacttactggatcgtatgcctaaggggatcgcattgctctcagaactcgaagttcttaaggggttcataattggtgatcacaagaagcacacttcatgtactctgcatgatttgtcaggattgcaaaagttgaaaaaattgacaattaacacaagcagggaggattttcccaacgaagaagagctaaccgttttacaaggatttggttcgcttcaaaagctaacaatagcatggggaggagtagaatttcttgccaaccgccaaaataagcataggaagcaggacaatgttggagcacaaccaaaagcagcaagcacaacggatgccagtggaggtaacagaaatgaagatgatgctaatggcattcaaaatcatgtgccaaaaaccccggcaaggtcattaaccttcaagcgaagggctatattggctccgaggattcgggaacattttgaagcacttgagaaactggacttgcaatgctaccctcatatgaaagcaccgacttggttgactcccggaatgctcaagaagctggaaaaactctacattagagggggacagctccaaagtctaggtcaagttcaggagagtgacaagtggacagttgagatattgcgtttgaagttcttgagtgaactaaagatggattggaatgacctccagtcagcatttctaaaattgaattatgtggagaaatttagatgccctaagaccactttcttcccatgcgatgagactggagtctggctgaagcccggaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

352

Amino Acids

40.24

Weight (kDa)

9.3

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45520 AT5G45520
fragaria_vesca	FvH4_6g22160 FvH4_6g22160
malus_domestica	MD10G1305300.v1.1 MD12G1056400.v1.1
prunus_persica	Prupe.4G034300_v2.0.a1 Prupe.7G078100_v2.0.a1 Prupe.7G078100_v2.0.a1 Prupe.7G078100_v2.0.a1 Prupe.7G078100_v2.0.a1 Prupe.7G078600_v2.0.a1
pyrus_communis	pycom10g25780 pycom12g04920
rosa_chinensis	RchiOBHm_Chr3g0479511 RchiOBHm_Chr5g0005761
rosa_laevigata	RLG00000023563
rosa_multiflora	Rmu_sc0004732.1_g000003 Rmu_sc0010248.1_g000001 Rmu_sc0014513.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070100 Rroxscaffold_6G00402180
rosa_rugosa	Rorug03G0175900 Rorug03G0176000 Rorug03G0176100 Rorug03G0176200 Rorug04G0417900
rosa_samantha	Rh3AG226900 Rh3BG260000 Rh3CG234800 Rh3CG256900 Rh3DG252500 Rh5AG045400 Rh5BG044100 Rh5CG052900 Rh5DG043900
rosa_wichuraiana	Rw0G011120 Rw3G020270 Rw5G004570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	553
AclWI	GGATC	4 cut(s)	164, 216, 312, 329
AcsI	RAATTY	2 cut(s)	539, 989
AfaI	GTAC	1 cut(s)	394
AfiI	CCNNNNNNNGG	1 cut(s)	687
AflII	CTTAAG	2 cut(s)	260, 350
AflIII	ACRYGT	1 cut(s)	119
AhdI	GACNNNNNGTC	1 cut(s)	955
AhlI	ACTAGT	1 cut(s)	79
AluBI	AGCT	8 cut(s)	166, 187, 255, 268, 478, 514, 826, 856
AluI	AGCT	8 cut(s)	166, 187, 255, 268, 478, 514, 826, 856
Alw21I	GWGCWC	1 cut(s)	592
Alw26I	GTCTC	1 cut(s)	1022
AlwI	GGATC	4 cut(s)	164, 216, 312, 329
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	2 cut(s)	539, 989
ArsI	GACNNNNNNTTYG	2 cut(s)	853, 885
AspS9I	GGNCC	1 cut(s)	9
AsuC2I	CCSGG	3 cut(s)	683, 810, 1050
AsuHPI	GGTGA	2 cut(s)	247, 380
AvaII	GGWCC	1 cut(s)	9
AxyI	CCTNAGG	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	592
BbvI	GCAGC	1 cut(s)	614
BccI	CCATC	1 cut(s)	931
BclI	TGATCA	1 cut(s)	370
BcnI	CCSGG	3 cut(s)	683, 810, 1050
BcoDI	GTCTC	1 cut(s)	1022
BcuI	ACTAGT	1 cut(s)	79
BfaI	CTAG	3 cut(s)	80, 230, 866
BfrI	CTTAAG	2 cut(s)	260, 350
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	1 cut(s)	603
BlsI	GCNGC	1 cut(s)	604
Bme1390I	CCNGG	3 cut(s)	683, 810, 1050
Bme18I	GGWCC	1 cut(s)	9
BmeRI	GACNNNNNGTC	1 cut(s)	955
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	723
BmrFI	CCNGG	3 cut(s)	683, 810, 1050
BmsI	GCATC	3 cut(s)	607, 637, 986
BoxI	GACNNNNGTC	1 cut(s)	1034
BpmI	CTGGAG	2 cut(s)	938, 1053
BpuEI	CTTGAG	3 cut(s)	773, 803, 943
BpuMI	CCSGG	3 cut(s)	683, 810, 1050
BsaJI	CCNNGG	2 cut(s)	681, 725
Bsc4I	CCNNNNNNNGG	1 cut(s)	687
Bse1I	ACTGG	5 cut(s)	306, 621, 765, 955, 1036
Bse21I	CCTNAGG	1 cut(s)	315
Bse3DI	GCAATG	2 cut(s)	326, 776
BseDI	CCNNGG	2 cut(s)	681, 725
BseGI	GGATG	1 cut(s)	622
BseLI	CCNNNNNNNGG	1 cut(s)	687
BseMI	GCAATG	2 cut(s)	326, 776
BseMII	CTCAG	2 cut(s)	148, 348
BseNI	ACTGG	5 cut(s)	306, 621, 765, 955, 1036
BseRI	GAGGAG	1 cut(s)	546
BseXI	GCAGC	1 cut(s)	614
BsiHKAI	GWGCWC	1 cut(s)	592
BsiSI	CCGG	3 cut(s)	683, 810, 1050
BslFI	GGGAC	1 cut(s)	864
BslI	CCNNNNNNNGG	1 cut(s)	687
BsmAI	GTCTC	1 cut(s)	1022
BsmFI	GGGAC	1 cut(s)	864
BsmI	GAATGC	2 cut(s)	657, 819
Bsp1286I	GDGCHC	1 cut(s)	592
Bsp143I	GATC	6 cut(s)	156, 201, 208, 304, 321, 370
BspACI	CCGC	1 cut(s)	553
BspCNI	CTCAG	2 cut(s)	147, 347
BspLI	GGNNCC	1 cut(s)	723
BspPI	GGATC	4 cut(s)	164, 216, 312, 329
BspQI	GCTCTTC	1 cut(s)	468
BspTI	CTTAAG	2 cut(s)	260, 350
BsrDI	GCAATG	2 cut(s)	326, 776
BsrI	ACTGG	5 cut(s)	306, 621, 765, 955, 1036
BssECI	CCNNGG	2 cut(s)	681, 725
BssMI	GATC	6 cut(s)	156, 201, 208, 304, 321, 370
Bst4CI	ACNGT	2 cut(s)	484, 898
Bst6I	CTCTTC	1 cut(s)	468
BstAFI	CTTAAG	2 cut(s)	260, 350
BstC8I	GCNNGC	3 cut(s)	185, 257, 607
BstDEI	CTNAG	4 cut(s)	134, 315, 334, 1002
BstF5I	GGATG	1 cut(s)	622
BstKTI	GATC	6 cut(s)	159, 204, 211, 307, 324, 373
BstMAI	GTCTC	1 cut(s)	1022
BstMBI	GATC	6 cut(s)	156, 201, 208, 304, 321, 370
BstMWI	GCNNNNNNNGC	5 cut(s)	265, 511, 571, 719, 823
BstNSI	RCATGY	1 cut(s)	222
BstPAI	GACNNNNGTC	1 cut(s)	1034
BstSCI	CCNGG	3 cut(s)	681, 808, 1048
BstV1I	GCAGC	1 cut(s)	614
BstX2I	RGATCY	2 cut(s)	201, 208
BstYI	RGATCY	2 cut(s)	201, 208
Bsu36I	CCTNAGG	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	1038
BtsCI	GGATG	1 cut(s)	622
BtsIMutI	CAGTG	1 cut(s)	628
Cac8I	GCNNGC	3 cut(s)	185, 257, 607
Cfr13I	GGNCC	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	393
CviAII	CATG	7 cut(s)	160, 219, 390, 401, 525, 668, 1020
CviQI	GTAC	1 cut(s)	393
DdeI	CTNAG	4 cut(s)	134, 315, 334, 1002
DpnI	GATC	6 cut(s)	158, 203, 210, 306, 323, 372
DpnII	GATC	6 cut(s)	156, 201, 208, 304, 321, 370
DriI	GACNNNNNGTC	1 cut(s)	955
Eam1104I	CTCTTC	1 cut(s)	468
Eam1105I	GACNNNNNGTC	1 cut(s)	955
EarI	CTCTTC	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	9
Eco81I	CCTNAGG	1 cut(s)	315
FaeI	CATG	7 cut(s)	163, 222, 393, 404, 528, 671, 1023
FaqI	GGGAC	1 cut(s)	864
FatI	CATG	7 cut(s)	159, 218, 389, 400, 524, 667, 1019
FauNDI	CATATG	1 cut(s)	783
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	1 cut(s)	603
FokI	GGATG	1 cut(s)	629
Fsp4HI	GCNGC	1 cut(s)	603
FspBI	CTAG	3 cut(s)	80, 230, 866
GluI	GCNGC	1 cut(s)	603
GsuI	CTGGAG	2 cut(s)	938, 1053
HapII	CCGG	3 cut(s)	683, 810, 1050
Hin1II	CATG	7 cut(s)	163, 222, 393, 404, 528, 671, 1023
HincII	GTYRAC	2 cut(s)	85, 804
HindII	GTYRAC	2 cut(s)	85, 804
HindIII	AAGCTT	2 cut(s)	185, 253
HinfI	GANTC	5 cut(s)	173, 238, 730, 805, 1035
HpaII	CCGG	3 cut(s)	683, 810, 1050
HphI	GGTGA	2 cut(s)	247, 380
Hpy166II	GTNNAC	4 cut(s)	85, 804, 894, 929
Hpy188I	TCNGA	4 cut(s)	243, 289, 337, 726
Hpy188III	TCNNGA	7 cut(s)	170, 230, 411, 734, 820, 878, 922
Hpy8I	GTNNAC	4 cut(s)	85, 804, 894, 929
HpyAV	CCTTC	5 cut(s)	22, 39, 149, 702, 709
HpyCH4III	ACNGT	2 cut(s)	484, 898
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	4 cut(s)	183, 400, 418, 769
HpyF10VI	GCNNNNNNNGC	5 cut(s)	265, 511, 571, 719, 823
HpyF3I	CTNAG	4 cut(s)	134, 315, 334, 1002
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	7 cut(s)	163, 222, 393, 404, 528, 671, 1023
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	6 cut(s)	156, 201, 208, 304, 321, 370
LguI	GCTCTTC	1 cut(s)	468
LmnI	GCTCC	5 cut(s)	163, 215, 587, 727, 861
Lsp1109I	GCAGC	1 cut(s)	614
LweI	GCATC	3 cut(s)	607, 637, 986
MaeI	CTAG	3 cut(s)	80, 230, 866
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	4 cut(s)	221, 293, 629, 884
MalI	GATC	6 cut(s)	158, 203, 210, 306, 323, 372
MboI	GATC	6 cut(s)	156, 201, 208, 304, 321, 370
MboII	GAAGA	6 cut(s)	31, 211, 482, 485, 653, 1006
MflI	RGATCY	2 cut(s)	201, 208
MhlI	GDGCHC	1 cut(s)	592
MluCI	AATT	8 cut(s)	14, 363, 431, 438, 539, 971, 976, 989
MlyI	GAGTC	2 cut(s)	799, 1044
MmeI	TCCRAC	1 cut(s)	565
MseI	TTAA	4 cut(s)	261, 351, 441, 695
MspCI	CTTAAG	2 cut(s)	260, 350
MspI	CCGG	3 cut(s)	683, 810, 1050
MspR9I	CCNGG	3 cut(s)	683, 810, 1050
Mva1269I	GAATGC	2 cut(s)	657, 819
MwoI	GCNNNNNNNGC	5 cut(s)	265, 511, 571, 719, 823
NciI	CCSGG	3 cut(s)	683, 810, 1050
NdeI	CATATG	1 cut(s)	783
NdeII	GATC	6 cut(s)	156, 201, 208, 304, 321, 370
NlaIII	CATG	7 cut(s)	163, 222, 393, 404, 528, 671, 1023
NlaIV	GGNNCC	1 cut(s)	723
NmuCI	GTSAC	2 cut(s)	221, 884
NspI	RCATGY	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	468
PctI	GAATGC	2 cut(s)	657, 819
PfeI	GAWTC	3 cut(s)	173, 238, 730
PfoI	TCCNGGA	1 cut(s)	808
PkrI	GCNGC	1 cut(s)	604
PleI	GAGTC	2 cut(s)	799, 1043
PpsI	GAGTC	2 cut(s)	799, 1043
PshAI	GACNNNNGTC	1 cut(s)	1034
PspN4I	GGNNCC	1 cut(s)	723
PspPI	GGNCC	1 cut(s)	9
PsuI	RGATCY	2 cut(s)	201, 208
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
SapI	GCTCTTC	1 cut(s)	468
SaqAI	TTAA	4 cut(s)	261, 351, 441, 695
SatI	GCNGC	1 cut(s)	603
Sau3AI	GATC	6 cut(s)	156, 201, 208, 304, 321, 370
Sau96I	GGNCC	1 cut(s)	9
SchI	GAGTC	2 cut(s)	799, 1044
ScrFI	CCNGG	3 cut(s)	683, 810, 1050
SduI	GDGCHC	1 cut(s)	592
SfaNI	GCATC	3 cut(s)	607, 637, 986
SinI	GGWCC	1 cut(s)	9
SmlI	CTYRAG	5 cut(s)	260, 350, 752, 818, 922
SmoI	CTYRAG	5 cut(s)	260, 350, 752, 818, 922
SpeI	ACTAGT	1 cut(s)	79
Sse9I	AATT	8 cut(s)	14, 363, 431, 438, 539, 971, 976, 989
SsiI	CCGC	1 cut(s)	553
SspMI	CTAG	3 cut(s)	80, 230, 866
StyD4I	CCNGG	3 cut(s)	681, 808, 1048
TaaI	ACNGT	2 cut(s)	484, 898
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	2 cut(s)	142, 342
TasI	AATT	8 cut(s)	14, 363, 431, 438, 539, 971, 976, 989
TatI	WGTACW	1 cut(s)	392
TfiI	GAWTC	3 cut(s)	173, 238, 730
Tru1I	TTAA	4 cut(s)	261, 351, 441, 695
Tru9I	TTAA	4 cut(s)	261, 351, 441, 695
TscAI	CASTG	1 cut(s)	628
TseFI	GTSAC	2 cut(s)	221, 884
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	2 cut(s)	221, 884
TspDTI	ATGAA	5 cut(s)	165, 349, 378, 654, 800
TspGWI	ACGGA	1 cut(s)	629
TspRI	CASTG	1 cut(s)	628
Vha464I	CTTAAG	2 cut(s)	260, 350
VpaK11BI	GGWCC	1 cut(s)	9
XapI	RAATTY	2 cut(s)	539, 989
XbaI	TCTAGA	1 cut(s)	229
XceI	RCATGY	1 cut(s)	222
XspI	CTAG	3 cut(s)	80, 230, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.