Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001713

Physical Location & Seq

Genomic Coordinates Forward (+)

4763115 .. 4765699

Gene Structure 2585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G004570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGTTCCCTGAAGATGCTGTCATAAAGAAGAAGGTTTTAATCCACTGGTGGGTTGGAGAGGGGTTCATAGACAATTTGGACGCAGGAGAGACTGCTGAGATGAAGGGGAATAAATTATTCAAAGAATTTTTGGTTAACGACATTGTTCAGCCCTTCTACAAAAGGCGCAGGCCTAGTGCAGACAGCTGCAAGATGCAGCCTTCAATCCGTGATGCTGTGATTAAGCTTGCAAAGAGAGAAAAATTCTTCAAGTTCGATAGAAATAGAAACCCAACTGAAGATTTCTCTCGCTCTAACAGGGCATGTCTGGTAAGAACCATAGAAGGGTCCAATGTCCGTGAATTGCCACTCCTTTCAAGTCAGGAGAATGTTCAAAGTCTGATCAATGTCAATGAGCATGATCTTTATTTTAGACCAAACTGGTTCTCACAGATGAAAAGCGTCAAAGTTTTGCAGCTCGGGAGATGGCATTCAGACAAGCATCTCATTGAAGTAGAGGACTGTGAATTCCTGAAAGGCTTGAAGAAGATGAGAGAACTCCGGTACTTAAGCCTCCGAGGAGTGTCTAGAATCACAGAGCTTCCTGCTTCAATTTGCAAAGCCCGGAATCTAAGAATCCTGAACCTGAATGGATGCTGTGATTTGGAGAAACTCCCTCGTGGGATAGGCTCACTCAAGAAACTGACACACCTAGATATGTATGAGTGCTACTTGATAAGCGGCATGCCCAAAGGACTTGCTTTGCTCTCCAACCTCCAAGTGCTCAAAGGGTTTGTGATTAGTAAAAGGTCGGGAAGCCAAGACTGTAAGCTAGATGACTTGTCAAAATTGGAATATCTTCGGAAGCTGAGTATCCACATAGACAGAAATCAAGCTAAAACAGCAGAAAGAGAACTGAATTCTTTGGCAAAGTTCAAAAAGCTCCGGTCACTTTCTATATCATGGTCACGAATATATGACAAGCCTGCAACTCATTCTCTCCAAACTCTCCAGAGGGCAAAAAGAATAACAAAACTGCCTTCAATGTTAATGGCTCTAGAAAAACTTCCTTCAATGTCAAAGGGTCCAGAAAAACTGCCTTCAATTCCAGAGTCTCCACTTCCTTTGGAGAAACTTGACCTCCATTACTTCCCTCATTCAAAGATGCCAGATTGGTTGAAGCCAACACTCCTCGGTAAGCTAAAGAAGCTCTATATCAGAGGAGGAAGCCTCTCAGATCTTTGTCACAATGGCATCAATTGTACATGGACTGTCCAAATGGTGCGCTTGAAGTTCTTGAATGAATTGAAAATGGATTGGGGAACACTGCAAGGCTTGTTTCCGGAACTGAGTTACTTGGAGGTAGTCGAATGTCCTAAACTCCGTTTCACGCAATGTGATGAAAATGGAGTGTGGAAGAAGGAAGACTCGAAGCCAGTAGAACTAGCATCGAGCAGCAATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

481

Amino Acids

55.44

Weight (kDa)

9.51

Isoelectric Point (pI)

52.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	1 - 71	8e-11	Disease resistance protein Winged helix domain
LRR_14	PF23598	142 - 346	4.2e-24	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45520 AT5G45520
fragaria_vesca	FvH4_6g22160 FvH4_6g22160
malus_domestica	MD10G1305300.v1.1 MD12G1056400.v1.1
prunus_persica	Prupe.4G034300_v2.0.a1 Prupe.7G078100_v2.0.a1 Prupe.7G078100_v2.0.a1 Prupe.7G078100_v2.0.a1 Prupe.7G078100_v2.0.a1 Prupe.7G078600_v2.0.a1
pyrus_communis	pycom10g25780 pycom12g04920
rosa_chinensis	RchiOBHm_Chr3g0479511 RchiOBHm_Chr5g0005761
rosa_laevigata	RLG00000023563
rosa_multiflora	Rmu_sc0004732.1_g000003 Rmu_sc0010248.1_g000001 Rmu_sc0014513.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070100 Rroxscaffold_6G00402180
rosa_rugosa	Rorug03G0175900 Rorug03G0176000 Rorug03G0176100 Rorug03G0176200 Rorug04G0417900
rosa_samantha	Rh3AG226900 Rh3BG260000 Rh3CG234800 Rh3CG256900 Rh3DG252500 Rh5AG045400 Rh5BG044100 Rh5CG052900 Rh5DG043900
rosa_wichuraiana	Rw0G011120 Rw3G020270 Rw5G004570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	1321
AciI	CCGC	1 cut(s)	720
AcsI	RAATTY	4 cut(s)	125, 242, 506, 898
AcuI	CTGAAG	2 cut(s)	30, 297
AfaI	GTAC	2 cut(s)	545, 1243
AfiI	CCNNNNNNNGG	2 cut(s)	49, 324
AflII	CTTAAG	1 cut(s)	547
Alw21I	GWGCWC	1 cut(s)	765
Alw26I	GTCTC	2 cut(s)	83, 1098
Ama87I	CYCGRG	1 cut(s)	458
Aor13HI	TCCGGA	1 cut(s)	1321
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	4 cut(s)	186, 196, 454, 1434
ApoI	RAATTY	4 cut(s)	125, 242, 506, 898
Asp700I	GAANNNNTTC	2 cut(s)	837, 1044
AspLEI	GCGC	2 cut(s)	168, 1266
AspS9I	GGNCC	2 cut(s)	327, 1064
AsuC2I	CCSGG	1 cut(s)	604
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	2 cut(s)	327, 1064
BauI	CACGAG	1 cut(s)	657
BbsI	GAAGAC	1 cut(s)	1410
Bbv12I	GWGCWC	1 cut(s)	765
BbvI	GCAGC	3 cut(s)	173, 208, 466
BccI	CCATC	1 cut(s)	459
BciVI	GTATCC	1 cut(s)	863
BclI	TGATCA	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	604
BcoDI	GTCTC	2 cut(s)	83, 1098
BfaI	CTAG	6 cut(s)	174, 567, 692, 812, 1037, 1424
BfrI	CTTAAG	1 cut(s)	547
BfuI	GTATCC	1 cut(s)	863
BglII	AGATCT	1 cut(s)	1216
BisI	GCNGC	5 cut(s)	187, 197, 455, 721, 1435
BlsI	GCNGC	5 cut(s)	188, 198, 456, 722, 1436
Bme1390I	CCNGG	1 cut(s)	604
Bme18I	GGWCC	2 cut(s)	327, 1064
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	327, 1064
BmiI	GGNNCC	2 cut(s)	328, 1065
BmrFI	CCNGG	1 cut(s)	604
BmsI	GCATC	8 cut(s)	4, 183, 202, 490, 623, 1134, 1242, 1436
BpiI	GAAGAC	1 cut(s)	1410
BplI	GAGNNNNNCTC	2 cut(s)	1194, 1226
BpmI	CTGGAG	1 cut(s)	974
BpuEI	CTTGAG	1 cut(s)	659
BpuMI	CCSGG	1 cut(s)	604
BsaJI	CCNNGG	2 cut(s)	556, 1171
BsaWI	WCCGGW	3 cut(s)	540, 924, 1321
BsaXI	ACNNNNNCTCC	2 cut(s)	1104, 1134
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 324
Bse1I	ACTGG	3 cut(s)	50, 425, 1415
Bse3DI	GCAATG	2 cut(s)	1379, 1444
BseAI	TCCGGA	1 cut(s)	1321
BseDI	CCNNGG	2 cut(s)	556, 1171
BseGI	GGATG	1 cut(s)	638
BseLI	CCNNNNNNNGG	2 cut(s)	49, 324
BseMI	GCAATG	2 cut(s)	1379, 1444
BseMII	CTCAG	4 cut(s)	87, 839, 1227, 1319
BseNI	ACTGG	3 cut(s)	50, 425, 1415
BseRI	GAGGAG	3 cut(s)	573, 1160, 1215
BseXI	GCAGC	3 cut(s)	173, 208, 466
BsgI	GTGCAG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	765
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	4 cut(s)	541, 604, 925, 1322
BslI	CCNNNNNNNGG	2 cut(s)	49, 324
BsmAI	GTCTC	2 cut(s)	83, 1098
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	172
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	765
Bsp13I	TCCGGA	1 cut(s)	1321
Bsp1407I	TGTACA	1 cut(s)	1241
Bsp143I	GATC	3 cut(s)	381, 400, 1216
BspACI	CCGC	1 cut(s)	720
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	4 cut(s)	88, 840, 1226, 1320
BspEI	TCCGGA	1 cut(s)	1321
BspLI	GGNNCC	2 cut(s)	328, 1065
BspTI	CTTAAG	1 cut(s)	547
BsrDI	GCAATG	2 cut(s)	1379, 1444
BsrGI	TGTACA	1 cut(s)	1241
BsrI	ACTGG	3 cut(s)	50, 425, 1415
BssECI	CCNNGG	2 cut(s)	556, 1171
BssMI	GATC	3 cut(s)	381, 400, 1216
BssSI	CACGAG	1 cut(s)	657
Bst2BI	CACGAG	1 cut(s)	657
Bst4CI	ACNGT	3 cut(s)	503, 806, 1252
BstAFI	CTTAAG	1 cut(s)	547
BstAUI	TGTACA	1 cut(s)	1241
BstC8I	GCNNGC	4 cut(s)	170, 228, 725, 966
BstDEI	CTNAG	6 cut(s)	96, 611, 848, 1213, 1328, 1443
BstF5I	GGATG	1 cut(s)	638
BstHHI	GCGC	2 cut(s)	168, 1266
BstKTI	GATC	3 cut(s)	384, 403, 1219
BstMAI	GTCTC	2 cut(s)	83, 1098
BstMBI	GATC	3 cut(s)	381, 400, 1216
BstMWI	GCNNNNNNNGC	2 cut(s)	881, 1186
BstNSI	RCATGY	2 cut(s)	306, 727
BstSCI	CCNGG	1 cut(s)	602
BstV1I	GCAGC	3 cut(s)	173, 208, 466
BstV2I	GAAGAC	1 cut(s)	1410
BstX2I	RGATCY	1 cut(s)	1216
BstYI	RGATCY	1 cut(s)	1216
BsuI	GTATCC	1 cut(s)	863
BsuRI	GGCC	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	638
BtsI	GCAGTG	1 cut(s)	1304
BtsIMutI	CAGTG	2 cut(s)	43, 1304
Cac8I	GCNNGC	4 cut(s)	170, 228, 725, 966
CfoI	GCGC	2 cut(s)	168, 1266
Cfr13I	GGNCC	2 cut(s)	327, 1064
CseI	GACGC	2 cut(s)	89, 430
Csp6I	GTAC	2 cut(s)	544, 1242
CspCI	CAANNNNNGTGG	2 cut(s)	1086, 1121
CviAII	CATG	5 cut(s)	303, 398, 724, 942, 1245
CviQI	GTAC	2 cut(s)	544, 1242
DdeI	CTNAG	6 cut(s)	96, 611, 848, 1213, 1328, 1443
DpnI	GATC	3 cut(s)	383, 402, 1218
DpnII	GATC	3 cut(s)	381, 400, 1216
Eco147I	AGGCCT	1 cut(s)	172
Eco47I	GGWCC	2 cut(s)	327, 1064
Eco57I	CTGAAG	2 cut(s)	30, 297
Eco88I	CYCGRG	1 cut(s)	458
EcoRI	GAATTC	2 cut(s)	506, 898
FaeI	CATG	5 cut(s)	306, 401, 727, 945, 1248
FatI	CATG	5 cut(s)	302, 397, 723, 941, 1244
FbaI	TGATCA	1 cut(s)	381
Fnu4HI	GCNGC	5 cut(s)	187, 197, 455, 721, 1435
FokI	GGATG	1 cut(s)	645
Fsp4HI	GCNGC	5 cut(s)	187, 197, 455, 721, 1435
FspBI	CTAG	6 cut(s)	174, 567, 692, 812, 1037, 1424
GlaI	GCGC	2 cut(s)	167, 1265
GluI	GCNGC	5 cut(s)	187, 197, 455, 721, 1435
GsuI	CTGGAG	1 cut(s)	974
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	4 cut(s)	541, 604, 925, 1322
HgaI	GACGC	2 cut(s)	89, 430
HhaI	GCGC	2 cut(s)	168, 1266
Hin1II	CATG	5 cut(s)	306, 401, 727, 945, 1248
Hin6I	GCGC	2 cut(s)	166, 1264
HinP1I	GCGC	2 cut(s)	166, 1264
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	5 cut(s)	570, 607, 615, 1091, 1406
HpaI	GTTAAC	1 cut(s)	136
HpaII	CCGG	4 cut(s)	541, 604, 925, 1322
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	6 cut(s)	381, 475, 557, 843, 1199, 1216
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	9 cut(s)	25, 97, 163, 210, 317, 1029, 1059, 1089, 1393
HpyCH4III	ACNGT	3 cut(s)	503, 806, 1252
HpyCH4V	TGCA	8 cut(s)	179, 189, 196, 230, 454, 597, 968, 1309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	881, 1186
HpyF3I	CTNAG	6 cut(s)	96, 611, 848, 1213, 1328, 1443
Hsp92II	CATG	5 cut(s)	306, 401, 727, 945, 1248
HspAI	GCGC	2 cut(s)	166, 1264
Kpn2I	TCCGGA	1 cut(s)	1321
Ksp22I	TGATCA	1 cut(s)	381
KspAI	GTTAAC	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	381, 400, 1216
LmnI	GCTCC	1 cut(s)	927
Lsp1109I	GCAGC	3 cut(s)	173, 208, 466
LweI	GCATC	8 cut(s)	4, 183, 202, 490, 623, 1134, 1242, 1436
MaeI	CTAG	6 cut(s)	174, 567, 692, 812, 1037, 1424
MaeIII	GTNAC	4 cut(s)	927, 945, 1223, 1331
MalI	GATC	3 cut(s)	383, 402, 1218
MboI	GATC	3 cut(s)	381, 400, 1216
MboII	GAAGA	9 cut(s)	23, 40, 238, 290, 535, 538, 830, 1408, 1415
MfeI	CAATTG	1 cut(s)	1237
MflI	RGATCY	1 cut(s)	1216
MhlI	GDGCHC	1 cut(s)	765
MlyI	GAGTC	2 cut(s)	1100, 1400
MmeI	TCCRAC	2 cut(s)	34, 774
MroI	TCCGGA	1 cut(s)	1321
MroXI	GAANNNNTTC	2 cut(s)	837, 1044
MseI	TTAA	5 cut(s)	38, 135, 222, 548, 1028
MspA1I	CMGCKG	1 cut(s)	186
MspCI	CTTAAG	1 cut(s)	547
MspI	CCGG	4 cut(s)	541, 604, 925, 1322
MspR9I	CCNGG	1 cut(s)	604
MunI	CAATTG	1 cut(s)	1237
Mva1269I	GAATGC	1 cut(s)	469
MwoI	GCNNNNNNNGC	2 cut(s)	881, 1186
NciI	CCSGG	1 cut(s)	604
NdeII	GATC	3 cut(s)	381, 400, 1216
NlaIII	CATG	5 cut(s)	306, 401, 727, 945, 1248
NlaIV	GGNNCC	2 cut(s)	328, 1065
NmuCI	GTSAC	3 cut(s)	927, 945, 1223
NspI	RCATGY	2 cut(s)	306, 727
PaeI	GCATGC	1 cut(s)	727
PceI	AGGCCT	1 cut(s)	172
PctI	GAATGC	1 cut(s)	469
PdmI	GAANNNNTTC	2 cut(s)	837, 1044
PfeI	GAWTC	3 cut(s)	570, 607, 615
PkrI	GCNGC	5 cut(s)	188, 198, 456, 722, 1436
PleI	GAGTC	2 cut(s)	1099, 1400
PpsI	GAGTC	2 cut(s)	1099, 1400
PspN4I	GGNNCC	2 cut(s)	328, 1065
PspPI	GGNCC	2 cut(s)	327, 1064
PsuI	RGATCY	1 cut(s)	1216
PvuII	CAGCTG	1 cut(s)	186
RsaI	GTAC	2 cut(s)	545, 1243
RsaNI	GTAC	2 cut(s)	544, 1242
SaqAI	TTAA	5 cut(s)	38, 135, 222, 548, 1028
SatI	GCNGC	5 cut(s)	187, 197, 455, 721, 1435
Sau3AI	GATC	3 cut(s)	381, 400, 1216
Sau96I	GGNCC	2 cut(s)	327, 1064
SchI	GAGTC	2 cut(s)	1100, 1400
ScrFI	CCNGG	1 cut(s)	604
SduI	GDGCHC	1 cut(s)	765
SfaNI	GCATC	8 cut(s)	4, 183, 202, 490, 623, 1134, 1242, 1436
SinI	GGWCC	2 cut(s)	327, 1064
SmlI	CTYRAG	2 cut(s)	547, 674
SmoI	CTYRAG	2 cut(s)	547, 674
SphI	GCATGC	1 cut(s)	727
SseBI	AGGCCT	1 cut(s)	172
SsiI	CCGC	1 cut(s)	720
SspMI	CTAG	6 cut(s)	174, 567, 692, 812, 1037, 1424
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	602
TaaI	ACNGT	3 cut(s)	503, 806, 1252
TaqI	TCGA	4 cut(s)	255, 1347, 1409, 1430
TatI	WGTACW	1 cut(s)	1241
TauI	GCSGC	1 cut(s)	723
TfiI	GAWTC	3 cut(s)	570, 607, 615
Tru1I	TTAA	5 cut(s)	38, 135, 222, 548, 1028
Tru9I	TTAA	5 cut(s)	38, 135, 222, 548, 1028
TscAI	CASTG	2 cut(s)	50, 1311
TseFI	GTSAC	3 cut(s)	927, 945, 1223
TseI	GCWGC	4 cut(s)	186, 196, 454, 1434
Tsp45I	GTSAC	3 cut(s)	927, 945, 1223
TspDTI	ATGAA	5 cut(s)	55, 116, 449, 1296, 1395
TspGWI	ACGGA	3 cut(s)	197, 326, 1352
TspRI	CASTG	2 cut(s)	50, 1311
Vha464I	CTTAAG	1 cut(s)	547
VpaK11BI	GGWCC	2 cut(s)	327, 1064
XapI	RAATTY	4 cut(s)	125, 242, 506, 898
XbaI	TCTAGA	2 cut(s)	566, 1036
XceI	RCATGY	2 cut(s)	306, 727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	50
XmnI	GAANNNNTTC	2 cut(s)	837, 1044
XspI	CTAG	6 cut(s)	174, 567, 692, 812, 1037, 1424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.