Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001713

Physical Location & Seq

Genomic Coordinates Forward (+)

3498528 .. 3500567

Gene Structure 2040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG044100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2040 bp

ATGTCCAGGCGACCCCTTGTTACTACTTCATTCAAGACACCTTATGTGTCTCTGGATCTTCTTTCATACTTGAAATCTGGGCAGGTCACACCATTCCAAGTTTTCAATGACGTTATCATGCCCGATTTCAAAGACCACATATCCAAGGGAAACAACAGCCCCAACAATGCAGCAGCACGTGGGATACTTGAGGAAATCGAGAAAGATCTGGATCCCATTGGTAAGGCCTGTGAAAGGTTCCAGGAATGGGAAGTTAAGGTCAGCAGTGCTATCAAAGATTTAGCTTACCAAAGCCTGGATGATGCATTCAGAGAAAGAACAGAGGCACTGGAAAATACCAACAGAGCCAAATTTCTTCGGGACAAGCTTGAGAAAACCCGCAGCCTTGTCTCCAGGTTGAAGGAATCTGTTTGTTCAGCTTCAATCAAGATGAGTGATGAGACCTCAAAAGACTCAGATACTCCCCAGACCGGTGAGGAATTACAGCCTCCGAAGGAGATCGATGAAGCGAAGGTACGAAGAGAAATTAAGGCAATCTACGAAGGTCCAGACAAAATACTTAGGTGGTGCTTGCTCTGTTTCTCAATGTTCCCTGAAGATGCTGTCATAAAGAAGAAGGTTTTAATCCACTGGTGGGTTGGAGAGGGGTTCATAGACAATTTGGCCGCAGGAGAGACTGCTGAGAAGACGGGGAATAAATTATTCAAAGTATTTTTGGATAAGGACGTTGTTCAGCCCTTCTACAAAAGGCGCAGGCCTAGTGCAGACAGCTGCAAGATGCAGCCTTCCATCCGTGATGCTGTGATTGAGCTTGCAAGGACAGAAAACTTCTTCGATTTCGATAGAAATGGAAACCCAACTGAAGATTTCTCTTGCTCTGAGAGGGCATGCCTGGTAAGAACCATAGAAGGATCCAATGTCCGTGAATTGCCACTCCTTTCAAGTCAGGAGAATGTTCAAAGTCTGATCAATGTCAATGAGCATGATCTTTATTTTAGACCAAACTGGTTCTCAAAGATGAAAAGCGTCAAAGTTTTGCAGCTTGGGAGATGGCATTCAGACAAGCATCTCATTGAAGTAGAGGACTGTGAATTCCTGAAAGGCTTGAAGAATATGAGAGAGCTCCGGTACTTAAGCCTCCGAGGAGTGTCTAGAATCACAGAGCTTCCTGCTTCAATTTGCAAAGCCCGGAATCTAAGAATCCTGAACCTGAATGGATGCTGTGATTTGGAGAAACTCCCTCGTGGGATAGGCTCACTCAAGAAACTGACACACCTAGATATGTATGAGTGCTACTTGATAAGCGGCATGCCCAAAGGACTTGCTTTGCTCTCCAACCTCCAAGTGCTCAAAGGGTTTGTGATTAGTAAAAGGTCTGGAAGCCATGACTGTAAGCTAGATGATTTGTCAAAATTGGAATATCTTCGGAAGCTGAGTATCCACATCGACAAAAAGCAAGTTGAAACAGCAGAAGGAGAGCTGAATTCTTTGGCGAAGTTCAAAAAGCTCCAGTCACTTTCTATATCATGGTCACGAATATATGACAAGCCTGCAACTCATTCTCTCCAAACTCTCCAGAGGATTGACACCAAGAAGCTAACCAGAAGAATAACAAACTCAATGTTAAGGGCTCCAGAAAAACAGCCTTCAATTCCAGTTTCTCCAAAAGAGTCTCCACTTGATTTGGAGAAACTGGAGAAACTTGACCTCCATTACTTCCCTTATTCTACGATTCCAGATTGCTTGAAGCCTACACTCCGCGGTGCCTTAAAGAAGCTCTATATCAGAGGAGGAAGCCTCTCAGATCTTTGTCACATTTTTAAAGGCATCGAGTGTCGACGGACTGTCCGAATGGTGCGCTTGAAGTTCTTGAAGGAATTGGAAATGGAATGGGGGAAACTGGGAGACTTGTTTCCGAAACTAAGTTACTTGGAGGTAGTCGAATGTCCTAAACTCCATTTCGAACAATGTGATGCAAATGGAGTGTGGACAGAGGAAGACTCGAAGCAAGTAGAAGTAGCATTGAGCAGCGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

679

Amino Acids

77.79

Weight (kDa)

8.71

Isoelectric Point (pI)

50.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	196 - 266	1e-10	Disease resistance protein Winged helix domain
LRR_14	PF23598	337 - 533	4.9e-25	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45520 AT5G45520
fragaria_vesca	FvH4_6g22160 FvH4_6g22160
malus_domestica	MD10G1305300.v1.1 MD12G1056400.v1.1
prunus_persica	Prupe.4G034300_v2.0.a1 Prupe.7G078100_v2.0.a1 Prupe.7G078100_v2.0.a1 Prupe.7G078100_v2.0.a1 Prupe.7G078100_v2.0.a1 Prupe.7G078600_v2.0.a1
pyrus_communis	pycom10g25780 pycom12g04920
rosa_chinensis	RchiOBHm_Chr3g0479511 RchiOBHm_Chr5g0005761
rosa_laevigata	RLG00000023563
rosa_multiflora	Rmu_sc0004732.1_g000003 Rmu_sc0010248.1_g000001 Rmu_sc0014513.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070100 Rroxscaffold_6G00402180
rosa_rugosa	Rorug03G0175900 Rorug03G0176000 Rorug03G0176100 Rorug03G0176200 Rorug04G0417900
rosa_samantha	Rh3AG226900 Rh3BG260000 Rh3CG234800 Rh3CG256900 Rh3DG252500 Rh5AG045400 Rh5BG044100 Rh5CG052900 Rh5DG043900
rosa_wichuraiana	Rw0G011120 Rw3G020270 Rw5G004570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	73
AccB1I	GGYRCC	1 cut(s)	1763
AccB7I	CCANNNNNTGG	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	1837
AccII	CGCG	1 cut(s)	1761
AciI	CCGC	5 cut(s)	379, 666, 1305, 1759, 1761
AclWI	GGATC	5 cut(s)	63, 206, 219, 906, 919
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	3 cut(s)	350, 1091, 1483
AcuI	CTGAAG	2 cut(s)	615, 882
AcvI	CACGTG	1 cut(s)	179
AfaI	GTAC	2 cut(s)	516, 1130
AfiI	CCNNNNNNNGG	5 cut(s)	234, 247, 295, 470, 634
AflII	CTTAAG	1 cut(s)	1132
AgeI	ACCGGT	1 cut(s)	470
AhdI	GACNNNNNGTC	1 cut(s)	1844
AjnI	CCWGG	5 cut(s)	5, 240, 294, 392, 891
Alw21I	GWGCWC	2 cut(s)	1125, 1350
Alw26I	GTCTC	6 cut(s)	54, 394, 434, 668, 1677, 1899
AlwI	GGATC	5 cut(s)	63, 206, 219, 906, 919
AoxI	GGCC	3 cut(s)	225, 663, 755
ApeKI	GCWGC	7 cut(s)	170, 173, 381, 771, 781, 1039, 2028
ApoI	RAATTY	3 cut(s)	350, 1091, 1483
AsiGI	ACCGGT	1 cut(s)	470
Asp700I	GAANNNNTTC	1 cut(s)	1422
AspLEI	GCGC	2 cut(s)	753, 1860
AspS9I	GGNCC	1 cut(s)	545
AsuC2I	CCSGG	1 cut(s)	1189
AsuHPI	GGTGA	1 cut(s)	485
AsuII	TTCGAA	1 cut(s)	1962
AvaII	GGWCC	1 cut(s)	545
BamHI	GGATCC	2 cut(s)	211, 911
BanI	GGYRCC	1 cut(s)	1763
BanII	GRGCYC	2 cut(s)	1125, 1633
BarI	GAAGNNNNNNTAC	2 cut(s)	498, 530
BauI	CACGAG	1 cut(s)	1242
BbrPI	CACGTG	1 cut(s)	179
BbsI	GAAGAC	2 cut(s)	692, 2004
Bbv12I	GWGCWC	2 cut(s)	1125, 1350
BbvI	GCAGC	6 cut(s)	182, 185, 393, 758, 793, 1051
BccI	CCATC	2 cut(s)	797, 1044
BciT130I	CCWGG	5 cut(s)	7, 242, 296, 394, 893
BciVI	GTATCC	2 cut(s)	177, 1448
BclI	TGATCA	1 cut(s)	966
BcnI	CCSGG	1 cut(s)	1189
BcoDI	GTCTC	6 cut(s)	54, 394, 434, 668, 1677, 1899
BfaI	CTAG	4 cut(s)	759, 1152, 1277, 1397
BfrI	CTTAAG	1 cut(s)	1132
BfuAI	ACCTGC	1 cut(s)	73
BfuI	GTATCC	2 cut(s)	177, 1448
BglII	AGATCT	2 cut(s)	205, 1804
BisI	GCNGC	9 cut(s)	171, 174, 382, 666, 772, 782, 1040, 1306, 2029
BlsI	GCNGC	9 cut(s)	172, 175, 383, 667, 773, 783, 1041, 1307, 2030
Bme1390I	CCNGG	6 cut(s)	7, 242, 296, 394, 893, 1189
Bme18I	GGWCC	1 cut(s)	545
BmeRI	GACNNNNNGTC	1 cut(s)	1844
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	5 cut(s)	213, 239, 913, 1632, 1765
BmrFI	CCNGG	6 cut(s)	7, 242, 296, 394, 893, 1189
BmrI	ACTGGG	1 cut(s)	1910
BmsI	GCATC	9 cut(s)	292, 589, 768, 787, 1075, 1208, 1836, 1963, 2023
BmuI	ACTGGG	1 cut(s)	1910
BpiI	GAAGAC	2 cut(s)	692, 2004
BplI	GAGNNNNNCTC	4 cut(s)	1782, 1814, 1985, 2017
BpmI	CTGGAG	5 cut(s)	376, 1493, 1559, 1617, 1715
Bpu14I	TTCGAA	1 cut(s)	1962
BpuEI	CTTGAG	3 cut(s)	209, 389, 1244
BpuMI	CCSGG	1 cut(s)	1189
Bsa29I	ATCGAT	1 cut(s)	501
BsaAI	YACGTR	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	434
BsaJI	CCNNGG	3 cut(s)	144, 1141, 1759
BsaWI	WCCGGW	2 cut(s)	470, 1125
BsaXI	ACNNNNNCTCC	2 cut(s)	1692, 1722
Bsc4I	CCNNNNNNNGG	5 cut(s)	234, 247, 295, 470, 634
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	7 cut(s)	333, 635, 1010, 1510, 1655, 1698, 1905
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	5 cut(s)	7, 242, 296, 394, 893
BseCI	ATCGAT	1 cut(s)	501
BseDI	CCNNGG	3 cut(s)	144, 1141, 1759
BseGI	GGATG	3 cut(s)	304, 789, 1223
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	5 cut(s)	234, 247, 295, 470, 634
BseMII	CTCAG	5 cut(s)	468, 672, 870, 1424, 1815
BseNI	ACTGG	7 cut(s)	333, 635, 1010, 1510, 1655, 1698, 1905
BseRI	GAGGAG	2 cut(s)	1158, 1803
BseXI	GCAGC	6 cut(s)	182, 185, 393, 758, 793, 1051
BsgI	GTGCAG	1 cut(s)	783
Bsh1236I	CGCG	1 cut(s)	1761
BshFI	GGCC	3 cut(s)	227, 665, 757
BshNI	GGYRCC	1 cut(s)	1763
BshTI	ACCGGT	1 cut(s)	470
BshVI	ATCGAT	1 cut(s)	501
BsiHKAI	GWGCWC	2 cut(s)	1125, 1350
BsiSI	CCGG	3 cut(s)	471, 1126, 1189
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	5 cut(s)	234, 247, 295, 470, 634
BsmAI	GTCTC	6 cut(s)	54, 394, 434, 668, 1677, 1899
BsmFI	GGGAC	1 cut(s)	374
BsmI	GAATGC	2 cut(s)	305, 1054
BsnI	GGCC	3 cut(s)	227, 665, 757
Bso31I	GGTCTC	1 cut(s)	434
Bsp119I	TTCGAA	1 cut(s)	1962
Bsp1286I	GDGCHC	3 cut(s)	1125, 1350, 1633
Bsp143I	GATC	8 cut(s)	55, 205, 211, 498, 911, 966, 985, 1804
BspACI	CCGC	5 cut(s)	379, 666, 1305, 1759, 1761
BspANI	GGCC	3 cut(s)	227, 665, 757
BspCNI	CTCAG	5 cut(s)	467, 673, 871, 1425, 1814
BspDI	ATCGAT	1 cut(s)	501
BspFNI	CGCG	1 cut(s)	1761
BspLI	GGNNCC	5 cut(s)	213, 239, 913, 1632, 1765
BspMI	ACCTGC	1 cut(s)	73
BspPI	GGATC	5 cut(s)	63, 206, 219, 906, 919
BspT104I	TTCGAA	1 cut(s)	1962
BspT107I	GGYRCC	1 cut(s)	1763
BspTI	CTTAAG	1 cut(s)	1132
BspTNI	GGTCTC	1 cut(s)	434
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	7 cut(s)	333, 635, 1010, 1510, 1655, 1698, 1905
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	3 cut(s)	144, 1141, 1759
BssMI	GATC	8 cut(s)	55, 205, 211, 498, 911, 966, 985, 1804
BssSI	CACGAG	1 cut(s)	1242
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	1242
Bst2UI	CCWGG	5 cut(s)	7, 242, 296, 394, 893
Bst4CI	ACNGT	3 cut(s)	1088, 1391, 1846
Bst6I	CTCTTC	1 cut(s)	514
BstAFI	CTTAAG	1 cut(s)	1132
BstBAI	YACGTR	1 cut(s)	179
BstBI	TTCGAA	1 cut(s)	1962
BstC8I	GCNNGC	6 cut(s)	572, 755, 813, 889, 1310, 1551
BstDEI	CTNAG	9 cut(s)	454, 560, 681, 879, 1196, 1433, 1801, 1922, 2037
BstDSI	CCRYGG	1 cut(s)	1759
BstENI	CCTNNNNNAGG	1 cut(s)	232
BstF5I	GGATG	3 cut(s)	304, 789, 1223
BstFNI	CGCG	1 cut(s)	1761
BstHHI	GCGC	2 cut(s)	753, 1860
BstKTI	GATC	8 cut(s)	58, 208, 214, 501, 914, 969, 988, 1807
BstMAI	GTCTC	6 cut(s)	54, 394, 434, 668, 1677, 1899
BstMBI	GATC	8 cut(s)	55, 205, 211, 498, 911, 966, 985, 1804
BstNI	CCWGG	5 cut(s)	7, 242, 296, 394, 893
BstNSI	RCATGY	2 cut(s)	891, 1312
BstSCI	CCNGG	6 cut(s)	5, 240, 294, 392, 891, 1187
BstUI	CGCG	1 cut(s)	1761
BstV1I	GCAGC	6 cut(s)	182, 185, 393, 758, 793, 1051
BstV2I	GAAGAC	2 cut(s)	692, 2004
BstX2I	RGATCY	5 cut(s)	55, 205, 211, 911, 1804
BstYI	RGATCY	5 cut(s)	55, 205, 211, 911, 1804
Bsu15I	ATCGAT	1 cut(s)	501
BsuI	GTATCC	2 cut(s)	177, 1448
BsuRI	GGCC	3 cut(s)	227, 665, 757
BsuTUI	ATCGAT	1 cut(s)	501
BtgI	CCRYGG	1 cut(s)	1759
BtsCI	GGATG	3 cut(s)	304, 789, 1223
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	3 cut(s)	271, 326, 628
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	6 cut(s)	572, 755, 813, 889, 1310, 1551
CfoI	GCGC	2 cut(s)	753, 1860
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	545
Cfr42I	CCGCGG	1 cut(s)	1762
ClaI	ATCGAT	1 cut(s)	501
CseI	GACGC	1 cut(s)	1015
Csp6I	GTAC	2 cut(s)	515, 1129
CspAI	ACCGGT	1 cut(s)	470
CspCI	CAANNNNNGTGG	2 cut(s)	1665, 1700
CviAII	CATG	6 cut(s)	118, 888, 983, 1309, 1385, 1527
CviQI	GTAC	2 cut(s)	515, 1129
DdeI	CTNAG	9 cut(s)	454, 560, 681, 879, 1196, 1433, 1801, 1922, 2037
DpnI	GATC	8 cut(s)	57, 207, 213, 500, 913, 968, 987, 1806
DpnII	GATC	8 cut(s)	55, 205, 211, 498, 911, 966, 985, 1804
DraI	TTTAAA	1 cut(s)	1822
DriI	GACNNNNNGTC	1 cut(s)	1844
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	1 cut(s)	514
Eam1105I	GACNNNNNGTC	1 cut(s)	1844
EarI	CTCTTC	1 cut(s)	514
Ecl136II	GAGCTC	1 cut(s)	1123
Eco130I	CCWWGG	1 cut(s)	144
Eco147I	AGGCCT	2 cut(s)	227, 757
Eco24I	GRGCYC	2 cut(s)	1125, 1633
Eco31I	GGTCTC	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	545
Eco53kI	GAGCTC	1 cut(s)	1123
Eco57I	CTGAAG	2 cut(s)	615, 882
Eco72I	CACGTG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	1123
EcoNI	CCTNNNNNAGG	1 cut(s)	232
EcoRI	GAATTC	2 cut(s)	1091, 1483
EcoRII	CCWGG	5 cut(s)	5, 240, 294, 392, 891
EcoT14I	CCWWGG	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	307
EcoT38I	GRGCYC	2 cut(s)	1125, 1633
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	6 cut(s)	121, 891, 986, 1312, 1388, 1530
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	6 cut(s)	117, 887, 982, 1308, 1384, 1526
FauI	CCCGC	1 cut(s)	386
FbaI	TGATCA	1 cut(s)	966
FblI	GTMKAC	1 cut(s)	1837
Fnu4HI	GCNGC	9 cut(s)	171, 174, 382, 666, 772, 782, 1040, 1306, 2029
FokI	GGATG	3 cut(s)	311, 776, 1230
FriOI	GRGCYC	2 cut(s)	1125, 1633
Fsp4HI	GCNGC	9 cut(s)	171, 174, 382, 666, 772, 782, 1040, 1306, 2029
FspBI	CTAG	4 cut(s)	759, 1152, 1277, 1397
GlaI	GCGC	2 cut(s)	752, 1859
GluI	GCNGC	9 cut(s)	171, 174, 382, 666, 772, 782, 1040, 1306, 2029
GsuI	CTGGAG	5 cut(s)	376, 1493, 1559, 1617, 1715
HaeIII	GGCC	3 cut(s)	227, 665, 757
HapII	CCGG	3 cut(s)	471, 1126, 1189
HgaI	GACGC	1 cut(s)	1015
HhaI	GCGC	2 cut(s)	753, 1860
Hin1II	CATG	6 cut(s)	121, 891, 986, 1312, 1388, 1530
Hin6I	GCGC	2 cut(s)	751, 1858
HinP1I	GCGC	2 cut(s)	751, 1858
HincII	GTYRAC	1 cut(s)	1838
HindII	GTYRAC	1 cut(s)	1838
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	8 cut(s)	404, 452, 1155, 1192, 1200, 1670, 1732, 2000
HpaII	CCGG	3 cut(s)	471, 1126, 1189
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	2 cut(s)	1838, 1989
Hpy8I	GTNNAC	2 cut(s)	1838, 1989
Hpy99I	CGWCG	1 cut(s)	1842
HpyCH4III	ACNGT	3 cut(s)	1088, 1391, 1846
HpyCH4IV	ACGT	3 cut(s)	111, 178, 726
HpyF3I	CTNAG	9 cut(s)	454, 560, 681, 879, 1196, 1433, 1801, 1922, 2037
HpySE526I	ACGT	3 cut(s)	111, 178, 726
Hsp92II	CATG	6 cut(s)	121, 891, 986, 1312, 1388, 1530
HspAI	GCGC	2 cut(s)	751, 1858
Ksp22I	TGATCA	1 cut(s)	966
KspI	CCGCGG	1 cut(s)	1762
Kzo9I	GATC	8 cut(s)	55, 205, 211, 498, 911, 966, 985, 1804
LmnI	GCTCC	3 cut(s)	1128, 1512, 1636
Lsp1109I	GCAGC	6 cut(s)	182, 185, 393, 758, 793, 1051
LweI	GCATC	9 cut(s)	292, 589, 768, 787, 1075, 1208, 1836, 1963, 2023
MaeI	CTAG	4 cut(s)	759, 1152, 1277, 1397
MaeII	ACGT	3 cut(s)	111, 178, 726
MaeIII	GTNAC	6 cut(s)	19, 85, 1512, 1530, 1811, 1925
MalI	GATC	8 cut(s)	57, 207, 213, 500, 913, 968, 987, 1806
MboI	GATC	8 cut(s)	55, 205, 211, 498, 911, 966, 985, 1804
MflI	RGATCY	5 cut(s)	55, 205, 211, 911, 1804
MhlI	GDGCHC	3 cut(s)	1125, 1350, 1633
MlyI	GAGTC	3 cut(s)	446, 1679, 1994
MmeI	TCCRAC	2 cut(s)	619, 1359
Mph1103I	ATGCAT	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	1422
MseI	TTAA	7 cut(s)	255, 528, 623, 1133, 1625, 1769, 1821
MspA1I	CMGCKG	2 cut(s)	771, 1761
MspCI	CTTAAG	1 cut(s)	1132
MspI	CCGG	3 cut(s)	471, 1126, 1189
MspR9I	CCNGG	6 cut(s)	7, 242, 296, 394, 893, 1189
Mva1269I	GAATGC	2 cut(s)	305, 1054
MvaI	CCWGG	5 cut(s)	7, 242, 296, 394, 893
MvnI	CGCG	1 cut(s)	1761
NciI	CCSGG	1 cut(s)	1189
NdeII	GATC	8 cut(s)	55, 205, 211, 498, 911, 966, 985, 1804
NlaIII	CATG	6 cut(s)	121, 891, 986, 1312, 1388, 1530
NlaIV	GGNNCC	5 cut(s)	213, 239, 913, 1632, 1765
NmuCI	GTSAC	4 cut(s)	85, 1512, 1530, 1811
NsiI	ATGCAT	1 cut(s)	307
NspI	RCATGY	2 cut(s)	891, 1312
NspV	TTCGAA	1 cut(s)	1962
PaeI	GCATGC	2 cut(s)	891, 1312
PceI	AGGCCT	2 cut(s)	227, 757
PcsI	WCGNNNNNNNCGW	1 cut(s)	1846
PctI	GAATGC	2 cut(s)	305, 1054
PdmI	GAANNNNTTC	1 cut(s)	1422
PfeI	GAWTC	5 cut(s)	404, 1155, 1192, 1200, 1732
PflMI	CCANNNNNTGG	1 cut(s)	295
PfoI	TCCNGGA	1 cut(s)	240
PinAI	ACCGGT	1 cut(s)	470
PkrI	GCNGC	9 cut(s)	172, 175, 383, 667, 773, 783, 1041, 1307, 2030
PleI	GAGTC	3 cut(s)	446, 1678, 1994
PmaCI	CACGTG	1 cut(s)	179
PmlI	CACGTG	1 cut(s)	179
PpsI	GAGTC	3 cut(s)	446, 1678, 1994
Ppu21I	YACGTR	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	1125
Psp6I	CCWGG	5 cut(s)	5, 240, 294, 392, 891
PspCI	CACGTG	1 cut(s)	179
PspGI	CCWGG	5 cut(s)	5, 240, 294, 392, 891
PspN4I	GGNNCC	5 cut(s)	213, 239, 913, 1632, 1765
PspPI	GGNCC	1 cut(s)	545
PsuI	RGATCY	5 cut(s)	55, 205, 211, 911, 1804
PvuII	CAGCTG	1 cut(s)	771
RsaI	GTAC	2 cut(s)	516, 1130
RsaNI	GTAC	2 cut(s)	515, 1129
SacI	GAGCTC	1 cut(s)	1125
SacII	CCGCGG	1 cut(s)	1762
SalI	GTCGAC	1 cut(s)	1836
SaqAI	TTAA	7 cut(s)	255, 528, 623, 1133, 1625, 1769, 1821
SatI	GCNGC	9 cut(s)	171, 174, 382, 666, 772, 782, 1040, 1306, 2029
Sau3AI	GATC	8 cut(s)	55, 205, 211, 498, 911, 966, 985, 1804
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	3 cut(s)	446, 1679, 1994
ScrFI	CCNGG	6 cut(s)	7, 242, 296, 394, 893, 1189
SduI	GDGCHC	3 cut(s)	1125, 1350, 1633
SfaNI	GCATC	9 cut(s)	292, 589, 768, 787, 1075, 1208, 1836, 1963, 2023
Sfr303I	CCGCGG	1 cut(s)	1762
SfuI	TTCGAA	1 cut(s)	1962
SgrBI	CCGCGG	1 cut(s)	1762
SinI	GGWCC	1 cut(s)	545
SmlI	CTYRAG	4 cut(s)	188, 368, 1132, 1259
SmoI	CTYRAG	4 cut(s)	188, 368, 1132, 1259
SphI	GCATGC	2 cut(s)	891, 1312
SseBI	AGGCCT	2 cut(s)	227, 757
SsiI	CCGC	5 cut(s)	379, 666, 1305, 1759, 1761
SspMI	CTAG	4 cut(s)	759, 1152, 1277, 1397
SstI	GAGCTC	1 cut(s)	1125
StuI	AGGCCT	2 cut(s)	227, 757
StyD4I	CCNGG	6 cut(s)	5, 240, 294, 392, 891, 1187
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	3 cut(s)	1088, 1391, 1846
TaiI	ACGT	3 cut(s)	114, 181, 729
TauI	GCSGC	2 cut(s)	668, 1308
TfiI	GAWTC	5 cut(s)	404, 1155, 1192, 1200, 1732
Tru1I	TTAA	7 cut(s)	255, 528, 623, 1133, 1625, 1769, 1821
Tru9I	TTAA	7 cut(s)	255, 528, 623, 1133, 1625, 1769, 1821
TscAI	CASTG	3 cut(s)	271, 333, 635
TseFI	GTSAC	4 cut(s)	85, 1512, 1530, 1811
TseI	GCWGC	7 cut(s)	170, 173, 381, 771, 781, 1039, 2028
Tsp45I	GTSAC	4 cut(s)	85, 1512, 1530, 1811
TspDTI	ATGAA	5 cut(s)	18, 54, 519, 640, 1034
TspGWI	ACGGA	3 cut(s)	782, 911, 1855
TspRI	CASTG	3 cut(s)	271, 333, 635
Van91I	CCANNNNNTGG	1 cut(s)	295
Vha464I	CTTAAG	1 cut(s)	1132
VpaK11BI	GGWCC	1 cut(s)	545
XagI	CCTNNNNNAGG	1 cut(s)	232
XapI	RAATTY	3 cut(s)	350, 1091, 1483
XbaI	TCTAGA	1 cut(s)	1151
XceI	RCATGY	2 cut(s)	891, 1312
XcmI	CCANNNNNNNNNTGG	1 cut(s)	635
XmiI	GTMKAC	1 cut(s)	1837
XmnI	GAANNNNTTC	1 cut(s)	1422
XspI	CTAG	4 cut(s)	759, 1152, 1277, 1397
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.