Rorug03G0176000

disease resistance RPP13-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001713
Physical Location & Seq
Reverse (-)
14902461 .. 14911086
8626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0176000.1

Sequence Viewer

Length: 3060 bp
ATGAAGCGAGATTTGGCTTCTGTATTGGAGGGCCAGTCTCAACTCGCCGATTCTGTGGTTGGGACTCGCGCCGAGGAGGCGAGCCCTACGCTTCGAGTTTATGAGAGACTGAACTCCAAGAGATTCAAAGGCGCTATTGTTGATGGTTTGATTGTGTATACGCGGGCCAGGAAGCCCGGGATCAATGGCCGGAGTGGTTTGTCGGAGGATGCGAAAGCCGCCACCGCCGCCGCCGGGAGTAAGAGATTGGATGAGGTCAGAAATGATGGAAGCATTTCTGCTCCGGGGTTTGAGAGTGATCAGCTGACTGAAGTTGTAGTTAGGGATGAAGGGAGTAGCGGTTTGGTGATACCTAGGAGTAGGGGTGGGAAGGGGAGTGAGATATGGATGCCTTTCGTTGGGGATCACGATATCCATGGGGAGTTGGTTGAAGTTGTAGTTAGAGAAGAGGGCAATTGTAGTTTCGATATGAGTAGAAAGCGCTCTGCTGCCTTGAACGGCAGAGCTGCTAATAGTAGAAAGAGGGGAAAGGATTCACAACCAAGGTCATCGAGGAGGAAGCGCTTCACGCGATCCACATTGAGACCTAGTGTCGAGCCTCCGGTGGAAAATGGATCAGTGGCTGTGCTAGGATCAGAGGCCGTGACAGGGTTAGAGATTGTGCCAGTTGAAGCGATTTCTGATGTAGAGGAGGAGAAACTAGTTGAAGTCAGTACACTGCTGTCAAATAGTAAGCTGGAATTGAAAATGTCGAAAAAGGTTGTGCTTGACAGGAAGCCTACTACTGTCAAGGAGCTGTTTGATACAGGCTTGGTTGATGGGGTAACAGTGATTTACATGGGTAGCAAGAAGGCGTTTGGTCTGCGGGGCACAATAAGAGACGGAGGGATTTTGTGTTCATGTATATCTTGCAATGGCTGCAGAGTCATTCCACCATCTCAATTCGAGATTCATGCTTGTAAAACATACAGACGAGCAGCACAGTACATTTGCCTTGAGAATGGAAGGAGCCTGCTTGATCTTCTGAAGGTGTGCAGGAATGCTTCTCTGCATACATTGGAGACAACAATTCAGAAGTTCATCAATTCTTCACCAATAGACAAATATTTCACTTGTAAAAACTGTAGCGTCTCCTTTCCTCCGTATTGTGCTCTGGAAGATGGATCACTTTGCTATTCTTGCATGGAGTCAAATAAACCTGACAGCCCATCTCAGGAAACTAGTAAAAATCTCAGAGCTTTGCTGCCTGCTTCGTTGTCAATGTCCCCGAAAAATACAAAGTCCCCAAAAACTGCAACACCGAAGTCTGCAAGAAATGGAATTTTAAAGACTCCTAAAAGTACAATCTTAAGGCCCCCAAGAGGTGCTATCTCAAAGTCCCCCAAAAGTGCAATCTTAAATTCCACAAAGAGGGCAATCTCAAAGCTCCCAAAAAGTGCAATTTCAAAGTCTCCCAAGAGTGCTTCTCTTTGGAAGACAACTAAGTTATCAACACCAGTTTCGATCTCAAGTCCATCAAAAAGTGCTTCTCCAATGCGCTCAGAATATAAGAGTGGATGGAAGATAACATCAAAGTCATCAAAATCAGTCCTGATCTCAAGGTCCCCAAGTGCTGCTTCAATGTATTTTTCTTCACAAAAGAAAAGTCAGTGGAGGATTACAACTAAAGATCAGCGCCTGCATAAGTTGGTTTTTGAGGAAGGTGGATTGCCTGATGGAAGCGAAGTAGCATATTATGCCCGTGGACAGAAATTGCTAGTTGGTTATAAAAAGGGTTTTGGAATATTTTGCCGTTGCTGCAACACTGAGGTGAGCCCCTCGCAGTTTGAGGCTCATGCAGGTTGGGCTACACGCAGGAAACCCTATGCATACATATATACCTCCAATGGCGTGTCTCTCCACGAATTGGCCATATCTTTGTCAAGGGGTCGCAAGTATTCAGCCAAAGATAATGATGACTTGTGCATCATTTGTGCAGATGGTGGGAATCTTGTTCTTTGTGATGGATGCCCACGGGCCTTCCACAGAGATTGTGCATCTCTATCAGGTGTCCCTCGTGGTGACTGGTACTGTAAGTTTTGCCAGAATATGTTTCAAAGGGAGAAGTTTGTGGAACATAATGAAAATGCTGTTGCTGCTGGAAGGGTTGAAGGAATTGATCCTATAGAACAGATAACCCAAAGATGCATCCGTATTGTCAAAGACATTGAAGCTGAACTTACTGGATGTGTATTATGTAGGGGGTATGATTTTAGCAAATCGGGATTTGGTCCACGTACTATTATACTTTGTGATCAGTGTGAGAAGGAATATCATGTTGGCTGTTTGAAGAAACATAAAATGGCAAACTTGAAGGAATTGCCAAAGGGGAAATGGTTTTGTTGCACAGAATGCAATAAAATTCAATCTATTTTGCAAAAGTGTTTATCGAGGGGAGCTGAGGAGCTCCCAGATTCTCATTTGGATATTATGAAGAGAAAGCACGAGGAAAATGGTTTGGAGACTGTCAATGGTTTTGATGTCAGATGGAGACTTATTAGTGGCAAAATGGCTTCTCAGGAATCTCGGTTATTGCTTTCAAAGGCTGTTGCTATCTTCCATGATTGCTTTGATCCAATAATCGATGCAGAATCTGGGCGTGATCTCATTCCTGCCATGGTTTATGGAAGGAATGTTAGGAGCCAAGAATATGGGGGGATGTACTGTGCAATTCTTATGGTCAACTCAACTGTTGTATCAGCTGCTATTATTCGTGTTTTTGGTCAAGAAGTTGCTGAGCTTCCTTTAGTTGCTACAAGTAGTGGTAACCATGGCAAGGGCTACTTCCAATCATTATTTTCCTGCATTGAGAAGCTGCTAGCTTTCTTGAGTGTGAAGAACCTTGTGCTGCCGGCTGCCCCAGAAGCAGAATCCATATGGACAGAAAAATTTGGTTTTACAAAGATAGATCCGGACCAGCTTATTAACTACAGACGGACTTGCTACCAAATGATAACCTTCAAAGGAACATCAATGTTGCATAAAAAGGTTCCTGAATGTCGACTTGTAAATACAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1019

Amino Acids

112.21

Weight (kDa)

9.29

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 290 - 345 3.7e-12 Tify domain binding domain
TDBD PF16135 591 - 636 9.3e-14 Tify domain binding domain
PHD-1st_NSD PF23011 651 - 695 5e-07 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD PF00628 655 - 694 9.3e-07 PHD-finger
IDM1_C PF23209 870 - 1009 4.4e-54 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1767
Acc36I ACCTGC 1 cut(s) 1829
AccB7I CCANNNNNTGG 1 cut(s) 1906
AccI GTMKAC 2 cut(s) 158, 3040
AccII CGCG 3 cut(s) 69, 163, 571
AccIII TCCGGA 1 cut(s) 2950
AciI CCGC 7 cut(s) 163, 219, 225, 228, 231, 339, 865
AclWI GGATC 9 cut(s) 188, 411, 567, 622, 640, 1171, 2153, 2606, 2942
AcoI YGGCCR 2 cut(s) 187, 1908
AcsI RAATTY 4 cut(s) 1320, 1399, 2400, 2927
AcuI CTGAAG 2 cut(s) 330, 1046
AfaI GTAC 6 cut(s) 715, 986, 1342, 2069, 2278, 2702
AfeI AGCGCT 2 cut(s) 482, 563
AfiI CCNNNNNNNGG 8 cut(s) 234, 398, 648, 1213, 1361, 1410, 1906, 2815
AflII CTTAAG 1 cut(s) 1348
AhdI GACNNNNNGTC 1 cut(s) 590
AhlI ACTAGT 2 cut(s) 700, 1220
AjnI CCWGG 1 cut(s) 167
AjuI GAANNNNNNNTTGG 5 cut(s) 28, 1600, 1632, 2301, 2333
AleI CACNNNNGTG 1 cut(s) 1808
AloI GAACNNNNNNTCC 2 cut(s) 880, 912
Alw21I GWGCWC 2 cut(s) 1153, 2448
AlwI GGATC 9 cut(s) 188, 411, 567, 622, 640, 1171, 2153, 2606, 2942
AlwNI CAGNNNCTG 3 cut(s) 623, 1678, 2633
Ama87I CYCGRG 1 cut(s) 176
Aor13HI TCCGGA 1 cut(s) 2950
Aor51HI AGCGCT 2 cut(s) 482, 563
AoxI GGCC 7 cut(s) 31, 165, 187, 639, 1352, 1908, 2016
ApoI RAATTY 4 cut(s) 1320, 1399, 2400, 2927
ArsI GACNNNNNNTTYG 2 cut(s) 1630, 1662
Asp700I GAANNNNTTC 3 cut(s) 274, 532, 563
AspA2I CCTAGG 1 cut(s) 353
AspLEI GCGC 6 cut(s) 71, 134, 483, 564, 1539, 1677
AspS9I GGNCC 7 cut(s) 31, 165, 1353, 1602, 2016, 2270, 2953
AsuC2I CCSGG 4 cut(s) 177, 178, 235, 285
AsuHPI GGTGA 4 cut(s) 358, 1083, 1822, 2072
AsuNHI GCTAGC 1 cut(s) 2857
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 3 cut(s) 1602, 2270, 2953
AvrII CCTAGG 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 872
BaeI ACNNNNGTAYC 2 cut(s) 2718, 2751
BalI TGGCCA 1 cut(s) 1910
BanII GRGCYC 3 cut(s) 86, 1817, 2448
BauI CACGAG 2 cut(s) 2055, 2483
BbsI GAAGAC 1 cut(s) 1481
Bbv12I GWGCWC 2 cut(s) 1153, 2448
BbvCI CCTCAGC 1 cut(s) 2439
BceAI ACGGC 3 cut(s) 514, 626, 1776
BcgI CGANNNNNNTGC 2 cut(s) 935, 969
BciT130I CCWGG 1 cut(s) 169
BclI TGATCA 2 cut(s) 298, 2293
BcnI CCSGG 4 cut(s) 177, 178, 235, 285
BcuI ACTAGT 2 cut(s) 700, 1220
BfaI CTAG 7 cut(s) 354, 588, 629, 701, 1221, 1757, 2858
BfmI CTRYAG 4 cut(s) 919, 1123, 2163, 2968
BfoI RGCGCY 4 cut(s) 135, 484, 565, 1678
BfrI CTTAAG 1 cut(s) 1348
BfuAI ACCTGC 1 cut(s) 1829
BglI GCCNNNNNGGC 1 cut(s) 77
BlnI CCTAGG 1 cut(s) 353
BlpI GCTNAGC 1 cut(s) 2775
Bme1390I CCNGG 5 cut(s) 169, 177, 178, 235, 285
Bme18I GGWCC 3 cut(s) 1602, 2270, 2953
BmeRI GACNNNNNGTC 1 cut(s) 590
BmeT110I CYCGRG 1 cut(s) 176
BmgT120I GGNCC 7 cut(s) 31, 165, 1353, 1602, 2016, 2270, 2953
BmiI GGNNCC 5 cut(s) 1010, 1355, 1604, 2681, 3030
BmrFI CCNGG 5 cut(s) 169, 177, 178, 235, 285
BmsI GCATC 8 cut(s) 199, 378, 1974, 1997, 2045, 2174, 2196, 2614
BmtI GCTAGC 1 cut(s) 2861
BpiI GAAGAC 1 cut(s) 1481
BplI GAGNNNNNCTC 2 cut(s) 1450, 1482
Bpu10I CCTNAGC 1 cut(s) 2439
Bpu1102I GCTNAGC 1 cut(s) 2775
BpuEI CTTGAG 4 cut(s) 1016, 1492, 1582, 2887
BpuMI CCSGG 4 cut(s) 177, 178, 235, 285
Bsa29I ATCGAT 1 cut(s) 2622
BsaAI YACGTR 1 cut(s) 2276
BsaI GGTCTC 1 cut(s) 577
BsaWI WCCGGW 2 cut(s) 601, 2950
BsaXI ACNNNNNCTCC 6 cut(s) 20, 50, 325, 349, 355, 379
Bsc4I CCNNNNNNNGG 8 cut(s) 234, 398, 648, 1213, 1361, 1410, 1906, 2815
Bse118I RCCGGY 1 cut(s) 2890
Bse1I ACTGG 5 cut(s) 34, 665, 1496, 2069, 2227
Bse3DI GCAATG 1 cut(s) 919
BseAI TCCGGA 1 cut(s) 2950
BseBI CCWGG 1 cut(s) 169
BseCI ATCGAT 1 cut(s) 2622
BseGI GGATG 9 cut(s) 214, 256, 331, 393, 1562, 2012, 2187, 2231, 2703
BseLI CCNNNNNNNGG 8 cut(s) 234, 398, 648, 1213, 1361, 1410, 1906, 2815
BseMI GCAATG 1 cut(s) 919
BseMII CTCAG 7 cut(s) 1226, 1246, 1554, 1797, 2430, 2570, 2766
BseNI ACTGG 5 cut(s) 34, 665, 1496, 2069, 2227
BseRI GAGGAG 5 cut(s) 89, 568, 704, 707, 2456
BseSI GKGCMC 1 cut(s) 872
BsgI GTGCAG 2 cut(s) 1054, 1995
Bsh1236I CGCG 3 cut(s) 69, 163, 571
BshFI GGCC 7 cut(s) 33, 167, 189, 641, 1354, 1910, 2018
BshVI ATCGAT 1 cut(s) 2622
BsiHKAI GWGCWC 2 cut(s) 1153, 2448
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 7 cut(s) 177, 190, 234, 284, 602, 2891, 2951
BslFI GGGAC 6 cut(s) 76, 1249, 1267, 1363, 1588, 2036
BslI CCNNNNNNNGG 8 cut(s) 234, 398, 648, 1213, 1361, 1410, 1906, 2815
BsmBI CGTCTC 2 cut(s) 873, 1135
BsmFI GGGAC 6 cut(s) 76, 1249, 1267, 1363, 1588, 2036
BsmI GAATGC 2 cut(s) 1045, 2396
BsnI GGCC 7 cut(s) 33, 167, 189, 641, 1354, 1910, 2018
Bso31I GGTCTC 1 cut(s) 577
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 5 cut(s) 86, 872, 1153, 1817, 2448
Bsp13I TCCGGA 1 cut(s) 2950
Bsp1720I GCTNAGC 1 cut(s) 2775
Bsp19I CCATGG 3 cut(s) 415, 2655, 2809
BspACI CCGC 7 cut(s) 163, 219, 225, 228, 231, 339, 865
BspANI GGCC 7 cut(s) 33, 167, 189, 641, 1354, 1910, 2018
BspCNI CTCAG 7 cut(s) 1225, 1245, 1553, 1798, 2431, 2569, 2767
BspDI ATCGAT 1 cut(s) 2622
BspEI TCCGGA 1 cut(s) 2950
BspFNI CGCG 3 cut(s) 69, 163, 571
BspLI GGNNCC 5 cut(s) 1010, 1355, 1604, 2681, 3030
BspMAI CTGCAG 1 cut(s) 923
BspMI ACCTGC 1 cut(s) 1829
BspOI GCTAGC 1 cut(s) 2861
BspPI GGATC 9 cut(s) 188, 411, 567, 622, 640, 1171, 2153, 2606, 2942
BspTI CTTAAG 1 cut(s) 1348
BspTNI GGTCTC 1 cut(s) 577
BsrDI GCAATG 1 cut(s) 919
BsrFI RCCGGY 1 cut(s) 2890
BsrI ACTGG 5 cut(s) 34, 665, 1496, 2069, 2227
BssAI RCCGGY 1 cut(s) 2890
BssNAI GTATAC 1 cut(s) 159
BssSI CACGAG 2 cut(s) 2055, 2483
BssT1I CCWWGG 5 cut(s) 353, 415, 542, 2655, 2809
Bst1107I GTATAC 1 cut(s) 159
Bst2BI CACGAG 2 cut(s) 2055, 2483
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 8 cut(s) 787, 829, 984, 1124, 2072, 2506, 2705, 2731
Bst6I CTCTTC 2 cut(s) 441, 2468
BstAFI CTTAAG 1 cut(s) 1348
BstAPI GCANNNNNTGC 3 cut(s) 918, 1736, 2391
BstBAI YACGTR 1 cut(s) 2276
BstC8I GCNNGC 7 cut(s) 82, 165, 1013, 1248, 1679, 2859, 2892
BstDEI CTNAG 8 cut(s) 1212, 1232, 1482, 1540, 1806, 2439, 2556, 2775
BstDSI CCRYGG 5 cut(s) 415, 1741, 2012, 2655, 2809
BstEII GGTNACC 1 cut(s) 2804
BstF5I GGATG 9 cut(s) 214, 256, 331, 393, 1562, 2012, 2187, 2231, 2703
BstFNI CGCG 3 cut(s) 69, 163, 571
BstH2I RGCGCY 4 cut(s) 135, 484, 565, 1678
BstHHI GCGC 6 cut(s) 71, 134, 483, 564, 1539, 1677
BstNI CCWGG 1 cut(s) 169
BstPI GGTNACC 1 cut(s) 2804
BstSCI CCNGG 5 cut(s) 167, 175, 176, 233, 283
BstSFI CTRYAG 4 cut(s) 919, 1123, 2163, 2968
BstSLI GKGCMC 1 cut(s) 872
BstUI CGCG 3 cut(s) 69, 163, 571
BstV2I GAAGAC 1 cut(s) 1481
BstX2I RGATCY 1 cut(s) 2947
BstXI CCANNNNNNTGG 1 cut(s) 2690
BstYI RGATCY 1 cut(s) 2947
BstZ17I GTATAC 1 cut(s) 159
Bsu15I ATCGAT 1 cut(s) 2622
BsuRI GGCC 7 cut(s) 33, 167, 189, 641, 1354, 1910, 2018
BsuTUI ATCGAT 1 cut(s) 2622
BtgI CCRYGG 5 cut(s) 415, 1741, 2012, 2655, 2809
BtsCI GGATG 9 cut(s) 214, 256, 331, 393, 1562, 2012, 2187, 2231, 2703
BtsI GCAGTG 1 cut(s) 716
BtsIMutI CAGTG 6 cut(s) 624, 716, 834, 1655, 1803, 2303
BveI ACCTGC 1 cut(s) 1829
Cac8I GCNNGC 7 cut(s) 82, 165, 1013, 1248, 1679, 2859, 2892
CaiI CAGNNNCTG 3 cut(s) 623, 1678, 2633
CfoI GCGC 6 cut(s) 71, 134, 483, 564, 1539, 1677
Cfr10I RCCGGY 1 cut(s) 2890
Cfr13I GGNCC 7 cut(s) 31, 165, 1353, 1602, 2016, 2270, 2953
Cfr9I CCCGGG 1 cut(s) 176
ClaI ATCGAT 1 cut(s) 2622
CseI GACGC 1 cut(s) 1117
Csp6I GTAC 6 cut(s) 714, 985, 1341, 2068, 2277, 2701
CspCI CAANNNNNGTGG 2 cut(s) 2012, 2047
CviQI GTAC 6 cut(s) 714, 985, 1341, 2068, 2277, 2701
DdeI CTNAG 8 cut(s) 1212, 1232, 1482, 1540, 1806, 2439, 2556, 2775
DraI TTTAAA 1 cut(s) 1326
DriI GACNNNNNGTC 1 cut(s) 590
EaeI YGGCCR 2 cut(s) 187, 1908
Eam1104I CTCTTC 2 cut(s) 441, 2468
Eam1105I GACNNNNNGTC 1 cut(s) 590
EarI CTCTTC 2 cut(s) 441, 2468
Ecl136II GAGCTC 1 cut(s) 2446
Eco130I CCWWGG 5 cut(s) 353, 415, 542, 2655, 2809
Eco24I GRGCYC 3 cut(s) 86, 1817, 2448
Eco31I GGTCTC 1 cut(s) 577
Eco32I GATATC 1 cut(s) 412
Eco47I GGWCC 3 cut(s) 1602, 2270, 2953
Eco47III AGCGCT 2 cut(s) 482, 563
Eco53kI GAGCTC 1 cut(s) 2446
Eco57I CTGAAG 2 cut(s) 330, 1046
Eco88I CYCGRG 1 cut(s) 176
Eco91I GGTNACC 1 cut(s) 2804
EcoICRI GAGCTC 1 cut(s) 2446
EcoO109I RGGNCCY 2 cut(s) 1353, 1602
EcoO65I GGTNACC 1 cut(s) 2804
EcoRII CCWGG 1 cut(s) 167
EcoRV GATATC 1 cut(s) 412
EcoT14I CCWWGG 5 cut(s) 353, 415, 542, 2655, 2809
EcoT22I ATGCAT 2 cut(s) 1870, 2189
EcoT38I GRGCYC 3 cut(s) 86, 1817, 2448
ErhI CCWWGG 5 cut(s) 353, 415, 542, 2655, 2809
Esp3I CGTCTC 2 cut(s) 873, 1135
FalI AAGNNNNNCTT 6 cut(s) 1600, 1632, 2202, 2234, 2807, 2839
FaqI GGGAC 6 cut(s) 76, 1249, 1267, 1363, 1588, 2036
FauI CCCGC 2 cut(s) 156, 858
FauNDI CATATG 1 cut(s) 2915
FbaI TGATCA 2 cut(s) 298, 2293
FblI GTMKAC 2 cut(s) 158, 3040
FokI GGATG 9 cut(s) 221, 263, 338, 400, 1569, 2019, 2174, 2238, 2710
FriOI GRGCYC 3 cut(s) 86, 1817, 2448
FspBI CTAG 7 cut(s) 354, 588, 629, 701, 1221, 1757, 2858
GlaI GCGC 6 cut(s) 70, 133, 482, 563, 1538, 1676
HaeII RGCGCY 4 cut(s) 135, 484, 565, 1678
HaeIII GGCC 7 cut(s) 33, 167, 189, 641, 1354, 1910, 2018
HapII CCGG 7 cut(s) 177, 190, 234, 284, 602, 2891, 2951
HgaI GACGC 1 cut(s) 1117
HhaI GCGC 6 cut(s) 71, 134, 483, 564, 1539, 1677
Hin6I GCGC 6 cut(s) 69, 132, 481, 562, 1537, 1675
HinP1I GCGC 6 cut(s) 69, 132, 481, 562, 1537, 1675
HincII GTYRAC 2 cut(s) 2722, 3041
HindII GTYRAC 2 cut(s) 2722, 3041
HpaII CCGG 7 cut(s) 177, 190, 234, 284, 602, 2891, 2951
HphI GGTGA 4 cut(s) 358, 1083, 1822, 2072
Hpy166II GTNNAC 6 cut(s) 159, 716, 1745, 2273, 2722, 3041
Hpy188I TCNGA 9 cut(s) 205, 260, 637, 682, 1026, 1074, 1235, 1543, 2525
Hpy8I GTNNAC 6 cut(s) 159, 716, 1745, 2273, 2722, 3041
HpyCH4III ACNGT 8 cut(s) 787, 829, 984, 1124, 2072, 2506, 2705, 2731
HpyCH4IV ACGT 1 cut(s) 2275
HpyF3I CTNAG 8 cut(s) 1212, 1232, 1482, 1540, 1806, 2439, 2556, 2775
HpySE526I ACGT 1 cut(s) 2275
HspAI GCGC 6 cut(s) 69, 132, 481, 562, 1537, 1675
Kpn2I TCCGGA 1 cut(s) 2950
KroI GCCGGC 1 cut(s) 2890
KroNI GCCGGC 1 cut(s) 2892
Ksp22I TGATCA 2 cut(s) 298, 2293
LmnI GCTCC 8 cut(s) 286, 793, 1008, 1431, 2435, 2443, 2451, 2679
LweI GCATC 8 cut(s) 199, 378, 1974, 1997, 2045, 2174, 2196, 2614
MaeI CTAG 7 cut(s) 354, 588, 629, 701, 1221, 1757, 2858
MaeII ACGT 1 cut(s) 2275
MaeIII GTNAC 4 cut(s) 643, 823, 2060, 2804
MfeI CAATTG 1 cut(s) 454
MflI RGATCY 1 cut(s) 2947
MhlI GDGCHC 5 cut(s) 86, 872, 1153, 1817, 2448
MlsI TGGCCA 1 cut(s) 1910
MluNI TGGCCA 1 cut(s) 1910
MlyI GAGTC 4 cut(s) 58, 933, 1196, 1324
MmeI TCCRAC 1 cut(s) 183
Mox20I TGGCCA 1 cut(s) 1910
Mph1103I ATGCAT 2 cut(s) 1870, 2189
MroI TCCGGA 1 cut(s) 2950
MroNI GCCGGC 1 cut(s) 2890
MroXI GAANNNNTTC 3 cut(s) 274, 532, 563
MscI TGGCCA 1 cut(s) 1910
MseI TTAA 4 cut(s) 1325, 1349, 1397, 2964
MslI CAYNNNNRTG 1 cut(s) 1808
Msp20I TGGCCA 1 cut(s) 1910
MspA1I CMGCKG 2 cut(s) 304, 2741
MspCI CTTAAG 1 cut(s) 1348
MspI CCGG 7 cut(s) 177, 190, 234, 284, 602, 2891, 2951
MspR9I CCNGG 5 cut(s) 169, 177, 178, 235, 285
MunI CAATTG 1 cut(s) 454
Mva1269I GAATGC 2 cut(s) 1045, 2396
MvaI CCWGG 1 cut(s) 169
MvnI CGCG 3 cut(s) 69, 163, 571
NaeI GCCGGC 1 cut(s) 2892
NciI CCSGG 4 cut(s) 177, 178, 235, 285
NcoI CCATGG 3 cut(s) 415, 2655, 2809
NdeI CATATG 1 cut(s) 2915
NgoMIV GCCGGC 1 cut(s) 2890
NheI GCTAGC 1 cut(s) 2857
NlaIV GGNNCC 5 cut(s) 1010, 1355, 1604, 2681, 3030
NmeAIII GCCGAG 1 cut(s) 97
NmuCI GTSAC 2 cut(s) 643, 2060
NsiI ATGCAT 2 cut(s) 1870, 2189
OliI CACNNNNGTG 1 cut(s) 1808
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PctI GAATGC 2 cut(s) 1045, 2396
PdiI GCCGGC 1 cut(s) 2892
PdmI GAANNNNTTC 3 cut(s) 274, 532, 563
PfeI GAWTC 9 cut(s) 50, 123, 533, 949, 1987, 2453, 2561, 2630, 2909
PflMI CCANNNNNTGG 1 cut(s) 1906
PleI GAGTC 4 cut(s) 58, 932, 1195, 1324
PpsI GAGTC 4 cut(s) 58, 932, 1195, 1324
Ppu21I YACGTR 1 cut(s) 2276
PpuMI RGGWCCY 1 cut(s) 1602
PsiI TTATAA 1 cut(s) 1767
Psp124BI GAGCTC 1 cut(s) 2448
Psp5II RGGWCCY 1 cut(s) 1602
Psp6I CCWGG 1 cut(s) 167
PspEI GGTNACC 1 cut(s) 2804
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 5 cut(s) 1010, 1355, 1604, 2681, 3030
PspPI GGNCC 7 cut(s) 31, 165, 1353, 1602, 2016, 2270, 2953
PspPPI RGGWCCY 1 cut(s) 1602
PstI CTGCAG 1 cut(s) 923
PstNI CAGNNNCTG 3 cut(s) 623, 1678, 2633
PsuI RGATCY 1 cut(s) 2947
PvuII CAGCTG 2 cut(s) 304, 2741
RsaI GTAC 6 cut(s) 715, 986, 1342, 2069, 2278, 2702
RsaNI GTAC 6 cut(s) 714, 985, 1341, 2068, 2277, 2701
RseI CAYNNNNRTG 1 cut(s) 1808
SacI GAGCTC 1 cut(s) 2448
SalI GTCGAC 1 cut(s) 3039
SaqAI TTAA 4 cut(s) 1325, 1349, 1397, 2964
Sau96I GGNCC 7 cut(s) 31, 165, 1353, 1602, 2016, 2270, 2953
SchI GAGTC 4 cut(s) 58, 933, 1196, 1324
ScrFI CCNGG 5 cut(s) 169, 177, 178, 235, 285
SduI GDGCHC 5 cut(s) 86, 872, 1153, 1817, 2448
SfaNI GCATC 8 cut(s) 199, 378, 1974, 1997, 2045, 2174, 2196, 2614
SfcI CTRYAG 4 cut(s) 919, 1123, 2163, 2968
SinI GGWCC 3 cut(s) 1602, 2270, 2953
SmaI CCCGGG 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 1808
SmlI CTYRAG 5 cut(s) 995, 1348, 1507, 1597, 2866
SmoI CTYRAG 5 cut(s) 995, 1348, 1507, 1597, 2866
SpeI ACTAGT 2 cut(s) 700, 1220
SsiI CCGC 7 cut(s) 163, 219, 225, 228, 231, 339, 865
SspI AATATT 2 cut(s) 1106, 1785
SspMI CTAG 7 cut(s) 354, 588, 629, 701, 1221, 1757, 2858
SstI GAGCTC 1 cut(s) 2448
StyD4I CCNGG 5 cut(s) 167, 175, 176, 233, 283
StyI CCWWGG 5 cut(s) 353, 415, 542, 2655, 2809
TaaI ACNGT 8 cut(s) 787, 829, 984, 1124, 2072, 2506, 2705, 2731
TaiI ACGT 1 cut(s) 2278
TatI WGTACW 4 cut(s) 713, 984, 1340, 2700
TauI GCSGC 3 cut(s) 221, 230, 233
TfiI GAWTC 9 cut(s) 50, 123, 533, 949, 1987, 2453, 2561, 2630, 2909
Tru1I TTAA 4 cut(s) 1325, 1349, 1397, 2964
Tru9I TTAA 4 cut(s) 1325, 1349, 1397, 2964
TscAI CASTG 6 cut(s) 624, 723, 834, 1655, 1810, 2303
TseFI GTSAC 2 cut(s) 643, 2060
Tsp45I GTSAC 2 cut(s) 643, 2060
TspDTI ATGAA 7 cut(s) 17, 342, 888, 941, 1069, 2136, 2486
TspGWI ACGGA 4 cut(s) 897, 1131, 2180, 2989
TspMI CCCGGG 1 cut(s) 176
TspRI CASTG 6 cut(s) 624, 723, 834, 1655, 1810, 2303
Van91I CCANNNNNTGG 1 cut(s) 1906
Vha464I CTTAAG 1 cut(s) 1348
VpaK11BI GGWCC 3 cut(s) 1602, 2270, 2953
XapI RAATTY 4 cut(s) 1320, 1399, 2400, 2927
XcmI CCANNNNNNNNNTGG 1 cut(s) 2370
XmaI CCCGGG 1 cut(s) 176
XmaJI CCTAGG 1 cut(s) 353
XmiI GTMKAC 2 cut(s) 158, 3040
XmnI GAANNNNTTC 3 cut(s) 274, 532, 563
XspI CTAG 7 cut(s) 354, 588, 629, 701, 1221, 1757, 2858
Zsp2I ATGCAT 2 cut(s) 1870, 2189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.