Rmu_sc0010248.1_g000001

disease resistance RPP13-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010248.1
Physical Location & Seq
Reverse (-)
1329 .. 3380
2052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010248.1_g000001.1.cds

Sequence Viewer

Length: 2052 bp
atgtcggggcgacgaccccttgttactacttcattcaagacaccttatgtgtctctggatcttctttcatacttgaaatctgggcaggtcacaccattccaagttttcaatgacgttatcatgcccgatttccaagaccacatatccaagggaagcaacggcaccaacaatggagaagcacgaaagatacttgaggaaatccagaatgatctgattcccattggtgaggcctgtggaagattccagaaatggcaagttgaggtcagccgtgctatcaaagaattggcctaccaaagcttggatgacgcattcagagaaagaacagaggcactggaaaataccaacagagccaactttcttctgaacaagcttaccaggacccgcagcattgtctccaggttgaagaaatctgtttgttcagcttcaatcaagatgagtgatgagacctcaaaactcttgaatactcctcagaccgctgaggaattacagcctccgtatgagatcgatgaagcgaaggtacgaagagaaattaaagcaatctacgaaggtccagacaaaatacttaggcggtgcttgctttgtttctcaatgttccctgaagatgctgtcataaagaagaaggttttaatccactggtgggttggagaggggttcatagacaatttggccgcaggagagactgctgagaagaaggggaataaattattcaatgtatttttggataaggacattgttcagcccttctacaaaaggcgcaggcctagtgcagacagctgcaagatgcagccttcaatccgtggtgatgtgattgatcttgcaaagagagaagaattcttcgatttcgatagaaatggaaacccaactgaaaatttctcttgctctaagagggcatgcctggtaagaaccatagaaggatccaatgtccgtgaattgccactcctttcaagtcaggagaatgttcaaagtctgatcaatgtcaatgagcatgatctttattttagaccaaactggttctcacagatgaaaagcgtcaaagttttgcagctcgggagatggcattcagacaagcatatcattgaagtagaggactgtgaattcctgaaaggcttgaagaagatgagagaactccggtacttaagcctccgaggagtctctagaatcacagagcttcctgcttcaatttgcaaagcccggaatctaagaatcctgaacctgaatggatgctgtgatttggagaaactccctcgtgggataggctcactcaagaaactgacacacctagatatgtatgagtgctacttgataagcggcatgcccaaaggacttgctttgctctccaacctccaagtgctcaaagggtttgtgattagtaaaaggtctggaaggcatgactgtaagctagatgacttgtcaaaattggaaaatcttcggaagctgagtatccacatagacagaaatcaagttgaaacagcagaaagagagctgaattctttggcaaaattcaaaaagctcaagtcactttctatatcatggtcacgaatatatgacaagcctgcaactcattctctccaaactctccagaggattgacaccaagaagctagccagaagaataacaaaactgccttcaatgttcatggctccagaaaaacttccttcaatgtcaatggctccagaaaagctgccttcaattccagcgtctccacttcatttggagaaacttgacctccattacttccctcattctacgatgccagattggttgaagccaacgctcctcggtaagctaaataagctctatatcagaggaggaagcctctcagatctttgtcacaatggcagcaattgtacatggactgtccaaatggtgcgcttgaagttcttggaggaattgaaaatggattggggagaactgcaaggcttgtttccgaaactgagttacttggaggtagtcgaatgtcctcaactccgtttcaagcaatgtgatgaaaatggagtgtggaaaaaggaagactcgaagcaaggagaactagcatcgagcagcaatgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

683

Amino Acids

78.26

Weight (kDa)

9.2

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 76
AccB1I GGYRCC 1 cut(s) 161
AccB7I CCANNNNNTGG 1 cut(s) 298
AciI CCGC 5 cut(s) 382, 474, 568, 669, 1308
AclWI GGATC 3 cut(s) 66, 909, 922
AcoI YGGCCR 1 cut(s) 666
AcsI RAATTY 5 cut(s) 830, 868, 1094, 1486, 1499
AcuI CTGAAG 1 cut(s) 618
AfaI GTAC 3 cut(s) 519, 1133, 1849
AfiI CCNNNNNNNGG 2 cut(s) 298, 637
AflII CTTAAG 1 cut(s) 1135
AjnI CCWGG 3 cut(s) 374, 395, 894
Alw21I GWGCWC 1 cut(s) 1353
Alw26I GTCTC 6 cut(s) 57, 397, 437, 671, 1156, 1704
AlwI GGATC 3 cut(s) 66, 909, 922
Ama87I CYCGRG 1 cut(s) 1046
AoxI GGCC 4 cut(s) 228, 285, 666, 758
ApeKI GCWGC 7 cut(s) 384, 774, 784, 1042, 1681, 1839, 2040
ApoI RAATTY 5 cut(s) 830, 868, 1094, 1486, 1499
Asp700I GAANNNNTTC 2 cut(s) 1425, 1650
AspLEI GCGC 2 cut(s) 756, 1872
AspS9I GGNCC 2 cut(s) 378, 548
AsuC2I CCSGG 1 cut(s) 1192
AsuHPI GGTGA 2 cut(s) 236, 812
AsuNHI GCTAGC 1 cut(s) 1600
AvaI CYCGRG 1 cut(s) 1046
AvaII GGWCC 2 cut(s) 378, 548
BamHI GGATCC 1 cut(s) 914
BanI GGYRCC 1 cut(s) 161
BarI GAAGNNNNNNTAC 2 cut(s) 501, 533
BauI CACGAG 1 cut(s) 1245
BbsI GAAGAC 1 cut(s) 2016
Bbv12I GWGCWC 1 cut(s) 1353
BbvCI CCTCAGC 1 cut(s) 477
BbvI GCAGC 6 cut(s) 396, 761, 796, 1054, 1668, 1851
BccI CCATC 1 cut(s) 1047
BceAI ACGGC 2 cut(s) 175, 252
BciT130I CCWGG 3 cut(s) 376, 397, 896
BciVI GTATCC 1 cut(s) 1451
BclI TGATCA 1 cut(s) 969
BcnI CCSGG 1 cut(s) 1192
BcoDI GTCTC 6 cut(s) 57, 397, 437, 671, 1156, 1704
BfaI CTAG 6 cut(s) 762, 1155, 1280, 1400, 1601, 2030
BfrI CTTAAG 1 cut(s) 1135
BfuAI ACCTGC 1 cut(s) 76
BfuI GTATCC 1 cut(s) 1451
BglII AGATCT 1 cut(s) 1822
BisI GCNGC 9 cut(s) 385, 669, 775, 785, 1043, 1309, 1682, 1840, 2041
BlsI GCNGC 9 cut(s) 386, 670, 776, 786, 1044, 1310, 1683, 1841, 2042
Bme1390I CCNGG 4 cut(s) 376, 397, 896, 1192
Bme18I GGWCC 2 cut(s) 378, 548
BmeT110I CYCGRG 1 cut(s) 1046
BmgT120I GGNCC 2 cut(s) 378, 548
BmiI GGNNCC 5 cut(s) 163, 380, 916, 1641, 1671
BmrFI CCNGG 4 cut(s) 376, 397, 896, 1192
BmsI GCATC 5 cut(s) 592, 771, 1211, 1740, 2042
BmtI GCTAGC 1 cut(s) 1604
BpiI GAAGAC 1 cut(s) 2016
BplI GAGNNNNNCTC 2 cut(s) 1800, 1832
BpmI CTGGAG 4 cut(s) 379, 1562, 1626, 1656
Bpu10I CCTNAGC 1 cut(s) 477
BpuEI CTTGAG 3 cut(s) 212, 1247, 1496
BpuMI CCSGG 1 cut(s) 1192
Bsa29I ATCGAT 1 cut(s) 504
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 4 cut(s) 147, 796, 1144, 1777
BsaWI WCCGGW 1 cut(s) 1128
BsaXI ACNNNNNCTCC 2 cut(s) 1710, 1740
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 637
Bse1I ACTGG 3 cut(s) 336, 638, 1013
Bse3DI GCAATG 2 cut(s) 1985, 2050
BseBI CCWGG 3 cut(s) 376, 397, 896
BseCI ATCGAT 1 cut(s) 504
BseDI CCNNGG 4 cut(s) 147, 796, 1144, 1777
BseGI GGATG 2 cut(s) 307, 1226
BseLI CCNNNNNNNGG 2 cut(s) 298, 637
BseMI GCAATG 2 cut(s) 1985, 2050
BseMII CTCAG 6 cut(s) 468, 482, 675, 1427, 1833, 1925
BseNI ACTGG 3 cut(s) 336, 638, 1013
BseRI GAGGAG 4 cut(s) 456, 1161, 1766, 1821
BseXI GCAGC 6 cut(s) 396, 761, 796, 1054, 1668, 1851
BsgI GTGCAG 1 cut(s) 786
BshFI GGCC 4 cut(s) 230, 287, 668, 760
BshNI GGYRCC 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 504
BsiHKAI GWGCWC 1 cut(s) 1353
BsiHKCI CYCGRG 1 cut(s) 1046
BsiSI CCGG 2 cut(s) 1129, 1192
BslI CCNNNNNNNGG 2 cut(s) 298, 637
BsmAI GTCTC 6 cut(s) 57, 397, 437, 671, 1156, 1704
BsmBI CGTCTC 1 cut(s) 1704
BsmI GAATGC 2 cut(s) 308, 1057
BsnI GGCC 4 cut(s) 230, 287, 668, 760
Bso31I GGTCTC 1 cut(s) 437
BsoBI CYCGRG 1 cut(s) 1046
Bsp1286I GDGCHC 1 cut(s) 1353
Bsp1407I TGTACA 1 cut(s) 1847
Bsp143I GATC 8 cut(s) 58, 208, 501, 811, 914, 969, 988, 1822
BspACI CCGC 5 cut(s) 382, 474, 568, 669, 1308
BspANI GGCC 4 cut(s) 230, 287, 668, 760
BspCNI CTCAG 6 cut(s) 469, 481, 676, 1428, 1832, 1926
BspDI ATCGAT 1 cut(s) 504
BspLI GGNNCC 5 cut(s) 163, 380, 916, 1641, 1671
BspMI ACCTGC 1 cut(s) 76
BspOI GCTAGC 1 cut(s) 1604
BspPI GGATC 3 cut(s) 66, 909, 922
BspT107I GGYRCC 1 cut(s) 161
BspTI CTTAAG 1 cut(s) 1135
BspTNI GGTCTC 1 cut(s) 437
BsrDI GCAATG 2 cut(s) 1985, 2050
BsrGI TGTACA 1 cut(s) 1847
BsrI ACTGG 3 cut(s) 336, 638, 1013
BssECI CCNNGG 4 cut(s) 147, 796, 1144, 1777
BssMI GATC 8 cut(s) 58, 208, 501, 811, 914, 969, 988, 1822
BssSI CACGAG 1 cut(s) 1245
BssT1I CCWWGG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 1245
Bst2UI CCWGG 3 cut(s) 376, 397, 896
Bst4CI ACNGT 3 cut(s) 1091, 1394, 1858
Bst6I CTCTTC 1 cut(s) 517
BstAFI CTTAAG 1 cut(s) 1135
BstAUI TGTACA 1 cut(s) 1847
BstC8I GCNNGC 6 cut(s) 575, 758, 892, 1313, 1554, 1602
BstDSI CCRYGG 1 cut(s) 796
BstF5I GGATG 2 cut(s) 307, 1226
BstHHI GCGC 2 cut(s) 756, 1872
BstKTI GATC 8 cut(s) 61, 211, 504, 814, 917, 972, 991, 1825
BstMAI GTCTC 6 cut(s) 57, 397, 437, 671, 1156, 1704
BstMBI GATC 8 cut(s) 58, 208, 501, 811, 914, 969, 988, 1822
BstMWI GCNNNNNNNGC 2 cut(s) 574, 1792
BstNI CCWGG 3 cut(s) 376, 397, 896
BstNSI RCATGY 2 cut(s) 894, 1315
BstSCI CCNGG 4 cut(s) 374, 395, 894, 1190
BstV1I GCAGC 6 cut(s) 396, 761, 796, 1054, 1668, 1851
BstV2I GAAGAC 1 cut(s) 2016
BstX2I RGATCY 3 cut(s) 58, 914, 1822
BstYI RGATCY 3 cut(s) 58, 914, 1822
Bsu15I ATCGAT 1 cut(s) 504
BsuI GTATCC 1 cut(s) 1451
BsuRI GGCC 4 cut(s) 230, 287, 668, 760
BsuTUI ATCGAT 1 cut(s) 504
BtgI CCRYGG 1 cut(s) 796
BtsCI GGATG 2 cut(s) 307, 1226
BtsIMutI CAGTG 2 cut(s) 329, 631
BveI ACCTGC 1 cut(s) 76
Cac8I GCNNGC 6 cut(s) 575, 758, 892, 1313, 1554, 1602
CfoI GCGC 2 cut(s) 756, 1872
Cfr13I GGNCC 2 cut(s) 378, 548
ClaI ATCGAT 1 cut(s) 504
CseI GACGC 3 cut(s) 314, 1018, 1686
Csp6I GTAC 3 cut(s) 518, 1132, 1848
CspCI CAANNNNNGTGG 2 cut(s) 1692, 1727
CviAII CATG 8 cut(s) 121, 891, 986, 1312, 1388, 1530, 1636, 1851
CviQI GTAC 3 cut(s) 518, 1132, 1848
DpnI GATC 8 cut(s) 60, 210, 503, 813, 916, 971, 990, 1824
DpnII GATC 8 cut(s) 58, 208, 501, 811, 914, 969, 988, 1822
EaeI YGGCCR 1 cut(s) 666
Eam1104I CTCTTC 1 cut(s) 517
EarI CTCTTC 1 cut(s) 517
Eco130I CCWWGG 1 cut(s) 147
Eco147I AGGCCT 2 cut(s) 230, 760
Eco31I GGTCTC 1 cut(s) 437
Eco47I GGWCC 2 cut(s) 378, 548
Eco57I CTGAAG 1 cut(s) 618
Eco88I CYCGRG 1 cut(s) 1046
EcoO109I RGGNCCY 1 cut(s) 378
EcoRI GAATTC 3 cut(s) 830, 1094, 1486
EcoRII CCWGG 3 cut(s) 374, 395, 894
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 1704
FaeI CATG 8 cut(s) 124, 894, 989, 1315, 1391, 1533, 1639, 1854
FatI CATG 8 cut(s) 120, 890, 985, 1311, 1387, 1529, 1635, 1850
FauI CCCGC 1 cut(s) 389
FbaI TGATCA 1 cut(s) 969
Fnu4HI GCNGC 9 cut(s) 385, 669, 775, 785, 1043, 1309, 1682, 1840, 2041
FokI GGATG 2 cut(s) 314, 1233
Fsp4HI GCNGC 9 cut(s) 385, 669, 775, 785, 1043, 1309, 1682, 1840, 2041
FspBI CTAG 6 cut(s) 762, 1155, 1280, 1400, 1601, 2030
GlaI GCGC 2 cut(s) 755, 1871
GluI GCNGC 9 cut(s) 385, 669, 775, 785, 1043, 1309, 1682, 1840, 2041
GsuI CTGGAG 4 cut(s) 379, 1562, 1626, 1656
HaeIII GGCC 4 cut(s) 230, 287, 668, 760
HapII CCGG 2 cut(s) 1129, 1192
HgaI GACGC 3 cut(s) 314, 1018, 1686
HhaI GCGC 2 cut(s) 756, 1872
Hin1II CATG 8 cut(s) 124, 894, 989, 1315, 1391, 1533, 1639, 1854
Hin6I GCGC 2 cut(s) 754, 1870
HinP1I GCGC 2 cut(s) 754, 1870
HindIII AAGCTT 2 cut(s) 295, 368
HinfI GANTC 7 cut(s) 214, 240, 1149, 1158, 1195, 1203, 2012
HpaII CCGG 2 cut(s) 1129, 1192
HphI GGTGA 2 cut(s) 236, 812
Hpy99I CGWCG 1 cut(s) 15
HpyCH4III ACNGT 3 cut(s) 1091, 1394, 1858
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 8 cut(s) 767, 777, 784, 818, 1042, 1185, 1556, 1915
HpyF10VI GCNNNNNNNGC 2 cut(s) 574, 1792
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 8 cut(s) 124, 894, 989, 1315, 1391, 1533, 1639, 1854
HspAI GCGC 2 cut(s) 754, 1870
Ksp22I TGATCA 1 cut(s) 969
Kzo9I GATC 8 cut(s) 58, 208, 501, 811, 914, 969, 988, 1822
LmnI GCTCC 3 cut(s) 1645, 1675, 1779
Lsp1109I GCAGC 6 cut(s) 396, 761, 796, 1054, 1668, 1851
LweI GCATC 5 cut(s) 592, 771, 1211, 1740, 2042
MaeI CTAG 6 cut(s) 762, 1155, 1280, 1400, 1601, 2030
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 6 cut(s) 22, 88, 1515, 1533, 1829, 1937
MalI GATC 8 cut(s) 60, 210, 503, 813, 916, 971, 990, 1824
MboI GATC 8 cut(s) 58, 208, 501, 811, 914, 969, 988, 1822
MfeI CAATTG 1 cut(s) 1843
MflI RGATCY 3 cut(s) 58, 914, 1822
MhlI GDGCHC 1 cut(s) 1353
MlyI GAGTC 2 cut(s) 1158, 2006
MmeI TCCRAC 2 cut(s) 622, 1362
MroXI GAANNNNTTC 2 cut(s) 1425, 1650
MseI TTAA 3 cut(s) 531, 626, 1136
MspA1I CMGCKG 2 cut(s) 476, 774
MspCI CTTAAG 1 cut(s) 1135
MspI CCGG 2 cut(s) 1129, 1192
MspR9I CCNGG 4 cut(s) 376, 397, 896, 1192
MunI CAATTG 1 cut(s) 1843
Mva1269I GAATGC 2 cut(s) 308, 1057
MvaI CCWGG 3 cut(s) 376, 397, 896
MwoI GCNNNNNNNGC 2 cut(s) 574, 1792
NciI CCSGG 1 cut(s) 1192
NdeII GATC 8 cut(s) 58, 208, 501, 811, 914, 969, 988, 1822
NheI GCTAGC 1 cut(s) 1600
NlaIII CATG 8 cut(s) 124, 894, 989, 1315, 1391, 1533, 1639, 1854
NlaIV GGNNCC 5 cut(s) 163, 380, 916, 1641, 1671
NmuCI GTSAC 4 cut(s) 88, 1515, 1533, 1829
NspI RCATGY 2 cut(s) 894, 1315
PaeI GCATGC 2 cut(s) 894, 1315
PceI AGGCCT 2 cut(s) 230, 760
PctI GAATGC 2 cut(s) 308, 1057
PdmI GAANNNNTTC 2 cut(s) 1425, 1650
PfeI GAWTC 5 cut(s) 214, 240, 1158, 1195, 1203
PflMI CCANNNNNTGG 1 cut(s) 298
PkrI GCNGC 9 cut(s) 386, 670, 776, 786, 1044, 1310, 1683, 1841, 2042
PleI GAGTC 2 cut(s) 1157, 2006
PpsI GAGTC 2 cut(s) 1157, 2006
PpuMI RGGWCCY 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 378
Psp6I CCWGG 3 cut(s) 374, 395, 894
PspGI CCWGG 3 cut(s) 374, 395, 894
PspN4I GGNNCC 5 cut(s) 163, 380, 916, 1641, 1671
PspPI GGNCC 2 cut(s) 378, 548
PspPPI RGGWCCY 1 cut(s) 378
PsuI RGATCY 3 cut(s) 58, 914, 1822
PvuII CAGCTG 1 cut(s) 774
RsaI GTAC 3 cut(s) 519, 1133, 1849
RsaNI GTAC 3 cut(s) 518, 1132, 1848
SaqAI TTAA 3 cut(s) 531, 626, 1136
SatI GCNGC 9 cut(s) 385, 669, 775, 785, 1043, 1309, 1682, 1840, 2041
Sau3AI GATC 8 cut(s) 58, 208, 501, 811, 914, 969, 988, 1822
Sau96I GGNCC 2 cut(s) 378, 548
SchI GAGTC 2 cut(s) 1158, 2006
ScrFI CCNGG 4 cut(s) 376, 397, 896, 1192
SduI GDGCHC 1 cut(s) 1353
SfaNI GCATC 5 cut(s) 592, 771, 1211, 1740, 2042
SinI GGWCC 2 cut(s) 378, 548
SmlI CTYRAG 4 cut(s) 191, 1135, 1262, 1511
SmoI CTYRAG 4 cut(s) 191, 1135, 1262, 1511
SphI GCATGC 2 cut(s) 894, 1315
SseBI AGGCCT 2 cut(s) 230, 760
SsiI CCGC 5 cut(s) 382, 474, 568, 669, 1308
SspMI CTAG 6 cut(s) 762, 1155, 1280, 1400, 1601, 2030
StuI AGGCCT 2 cut(s) 230, 760
StyD4I CCNGG 4 cut(s) 374, 395, 894, 1190
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 3 cut(s) 1091, 1394, 1858
TaiI ACGT 1 cut(s) 117
TaqI TCGA 6 cut(s) 504, 837, 843, 1953, 2015, 2036
TatI WGTACW 1 cut(s) 1847
TauI GCSGC 2 cut(s) 671, 1311
TfiI GAWTC 5 cut(s) 214, 240, 1158, 1195, 1203
Tru1I TTAA 3 cut(s) 531, 626, 1136
Tru9I TTAA 3 cut(s) 531, 626, 1136
TscAI CASTG 2 cut(s) 336, 638
TseFI GTSAC 4 cut(s) 88, 1515, 1533, 1829
TseI GCWGC 7 cut(s) 384, 774, 784, 1042, 1681, 1839, 2040
Tsp45I GTSAC 4 cut(s) 88, 1515, 1533, 1829
TspDTI ATGAA 8 cut(s) 21, 57, 522, 643, 1037, 1624, 1697, 2001
TspGWI ACGGA 4 cut(s) 483, 785, 914, 1958
TspRI CASTG 2 cut(s) 336, 638
Van91I CCANNNNNTGG 1 cut(s) 298
Vha464I CTTAAG 1 cut(s) 1135
VpaK11BI GGWCC 2 cut(s) 378, 548
XapI RAATTY 5 cut(s) 830, 868, 1094, 1486, 1499
XbaI TCTAGA 1 cut(s) 1154
XceI RCATGY 2 cut(s) 894, 1315
XcmI CCANNNNNNNNNTGG 1 cut(s) 638
XmnI GAANNNNTTC 2 cut(s) 1425, 1650
XspI CTAG 6 cut(s) 762, 1155, 1280, 1400, 1601, 2030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.