Rroxscaffold_1G00070100

disease resistance RPP13-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
90944788 .. 90946553
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00070100.1

Sequence Viewer

Length: 1665 bp
ATGTCCAGGCGACCCCTTGTTACTACTTCATTCAAGACACCTTATGTGTCTCTGGATCTTCTTTCATACTTGAAATCTGGGCAGGTCACACCATTCCAAGTTTTCAATGACGTTATCATGCCCGATTTCAAAGACCACATATCCAAGGGAAACAACAGCCCCAACAATGCAGCAGCACTTGGGATACTTGGGGAAATCGAGAAAGATCTGGATCCCATTGGTAAGGCCTGTGAAAGGTTCCAGAAATGGGAAGTTAAGGTCAGCAGTGCTATCAAAGATTTAGCTTACCAAAGCCTGGATGATGCATTCAGAGAAAGAACAGAGGCACTGGAAAATACCAACAGAGCCAAATTTCTTCTGAACAAGCTTACCAGGACCCGCAGCATTGTCTCCAGGTTGAAGAAATCTGTTTGTTCAGCTTCAATCAAGATGAGTGATGAGACCTCAGAAAAGTCAGATACTCCCCAGACCGGTGAGGAATTACAGCCTTCGAAGAAGATCGATGAAGCGAAGAAGAAGGTTCTAATCCACTGGTGGGTTGGAGAGGGGTTCATAGACAATTTGGCCGCAGGAGAGACTGCTGAGAAGACGGGGAATAAATTATTCAAAGTATTTTTGGATAAGGACATTGTTCAGCCCTTCCACAAAAGGCGCAGGCCTAGTGCAGACAGCTGCAAGATGCAGCCTTCCATCCGTAATGCTGTGATTGCACTTGCAAGGAGAGAACACTTCTTCGATTTCGATAGAAATCGAAACCCAACTGAAAATTTCTCTCGCTCTAAGAGGGCATGCCTGGTAAGAACCATAGAAGGATCCAATGTCCGTGAATTGCCACTCCTTTCAAGTCAGGAGAATGTTCGAAGTCTTATCAATGTCAATGAGCATGATCTTTATTTTAGAGCAAACTGGTTCTCAAAGATGAAAAGTGTCAAAGTTTTGCAGCTTGGGAGATGGCATTCAGACAAGCATCTCATTGAAGTAGAGGACTGTGAATTCCTGAAAGGCTTGAAGAATATGAGAGAGCTCCGGTACTTAAGCCTCCGAGGAGTCTCTAGAATCACAGAGCTTCCTGCTTCAATTTGCAAAGCCCGCAATCTAAGAATCCTGAACCTGAATGGATGTTGTGATTTGGAGAAACTCCCTCGTGGGATAGGCTCACTCAAGAACCTGACACACCTAGATATGTATGAGTGCTACTTGATAAGTGGCATGCCCAAAGGACTTGCTTTGCTCTCCAACCTCCAAGTGCTCAAAGGGTTTGTGATTAGTAAAAGGTCGGGAAGCCAAGACTGTAAGCTAGGTGACTTGTCAAAATTGGAATATCTTCGGAAGCTGAGTATCCACATAGACAGAAATCAAGCTAAAACAGCAGAAAGAGAGCTGAATTCTTTGGCAAAGTTCAAAAAGCTCCAGTCACTTTCTATATCATGGTCACGAATATATGACAAGCCTGCAACTCATTCTCTCCGAACTCTCCAGAGGGCAAAAAGAATAACAAAACTGCCTTCAATGTTAATGGCTCTAGAAAAACTTCCTTCAATGTCAATGGCTCCAGAAAAACTGCCTTCAATTCCAGAGTCTCCACTCCCTTTGGAGAAACTTGACCTCCATTACTTCCCCTCATTCAAAGATGCCAGATTGGTTGAAGCCAACACTCCTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

554

Amino Acids

63.19

Weight (kDa)

9.66

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 169 - 229 4.3e-07 Disease resistance protein Winged helix domain
LRR_14 PF23598 286 - 516 2.3e-25 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 73
AccB7I CCANNNNNTGG 1 cut(s) 295
AciI CCGC 3 cut(s) 379, 567, 1090
AclWI GGATC 5 cut(s) 63, 206, 219, 807, 820
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 4 cut(s) 350, 766, 992, 1384
AfaI GTAC 1 cut(s) 1031
AfiI CCNNNNNNNGG 5 cut(s) 234, 247, 295, 470, 535
AflII CTTAAG 1 cut(s) 1033
AgeI ACCGGT 1 cut(s) 470
AjnI CCWGG 5 cut(s) 5, 294, 371, 392, 792
Alw21I GWGCWC 2 cut(s) 1026, 1251
Alw26I GTCTC 6 cut(s) 54, 394, 434, 569, 1054, 1584
AlwI GGATC 5 cut(s) 63, 206, 219, 807, 820
AoxI GGCC 3 cut(s) 225, 564, 656
ApeKI GCWGC 6 cut(s) 170, 173, 381, 672, 682, 940
ApoI RAATTY 4 cut(s) 350, 766, 992, 1384
AsiGI ACCGGT 1 cut(s) 470
Asp700I GAANNNNTTC 2 cut(s) 1323, 1530
AspLEI GCGC 1 cut(s) 654
AspS9I GGNCC 1 cut(s) 375
AsuHPI GGTGA 2 cut(s) 485, 1313
AsuII TTCGAA 2 cut(s) 491, 859
AvaII GGWCC 1 cut(s) 375
BamHI GGATCC 2 cut(s) 211, 812
BanII GRGCYC 1 cut(s) 1026
BauI CACGAG 1 cut(s) 1143
BbsI GAAGAC 1 cut(s) 593
Bbv12I GWGCWC 2 cut(s) 1026, 1251
BbvI GCAGC 6 cut(s) 182, 185, 393, 659, 694, 952
BccI CCATC 2 cut(s) 698, 945
BciT130I CCWGG 5 cut(s) 7, 296, 373, 394, 794
BciVI GTATCC 2 cut(s) 177, 1349
BcoDI GTCTC 6 cut(s) 54, 394, 434, 569, 1054, 1584
BfaI CTAG 5 cut(s) 660, 1053, 1178, 1298, 1523
BfrI CTTAAG 1 cut(s) 1033
BfuAI ACCTGC 1 cut(s) 73
BfuI GTATCC 2 cut(s) 177, 1349
BglII AGATCT 1 cut(s) 205
BisI GCNGC 7 cut(s) 171, 174, 382, 567, 673, 683, 941
BlsI GCNGC 7 cut(s) 172, 175, 383, 568, 674, 684, 942
Bme1390I CCNGG 5 cut(s) 7, 296, 373, 394, 794
Bme18I GGWCC 1 cut(s) 375
BmgT120I GGNCC 1 cut(s) 375
BmiI GGNNCC 5 cut(s) 213, 239, 377, 814, 1551
BmrFI CCNGG 5 cut(s) 7, 296, 373, 394, 794
BmsI GCATC 4 cut(s) 292, 669, 976, 1621
BpiI GAAGAC 1 cut(s) 593
BpmI CTGGAG 4 cut(s) 376, 1394, 1460, 1536
Bpu14I TTCGAA 2 cut(s) 491, 859
BpuEI CTTGAG 1 cut(s) 1145
Bsa29I ATCGAT 1 cut(s) 501
BsaBI GATNNNNATC 2 cut(s) 210, 747
BsaI GGTCTC 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 144, 1042, 1658
BsaWI WCCGGW 2 cut(s) 470, 1026
BsaXI ACNNNNNCTCC 2 cut(s) 1590, 1620
Bsc4I CCNNNNNNNGG 5 cut(s) 234, 247, 295, 470, 535
Bse118I RCCGGY 1 cut(s) 470
Bse1I ACTGG 4 cut(s) 333, 536, 911, 1411
Bse8I GATNNNNATC 2 cut(s) 210, 747
BseBI CCWGG 5 cut(s) 7, 296, 373, 394, 794
BseCI ATCGAT 1 cut(s) 501
BseDI CCNNGG 3 cut(s) 144, 1042, 1658
BseGI GGATG 3 cut(s) 304, 690, 1124
BseJI GATNNNNATC 2 cut(s) 210, 747
BseLI CCNNNNNNNGG 5 cut(s) 234, 247, 295, 470, 535
BseMII CTCAG 3 cut(s) 459, 573, 1325
BseNI ACTGG 4 cut(s) 333, 536, 911, 1411
BseRI GAGGAG 2 cut(s) 1059, 1647
BseXI GCAGC 6 cut(s) 182, 185, 393, 659, 694, 952
BsgI GTGCAG 1 cut(s) 684
BshFI GGCC 3 cut(s) 227, 566, 658
BshTI ACCGGT 1 cut(s) 470
BshVI ATCGAT 1 cut(s) 501
BsiHKAI GWGCWC 2 cut(s) 1026, 1251
BsiSI CCGG 2 cut(s) 471, 1027
BslI CCNNNNNNNGG 5 cut(s) 234, 247, 295, 470, 535
BsmAI GTCTC 6 cut(s) 54, 394, 434, 569, 1054, 1584
BsmI GAATGC 2 cut(s) 305, 955
BsnI GGCC 3 cut(s) 227, 566, 658
Bso31I GGTCTC 1 cut(s) 434
Bsp119I TTCGAA 2 cut(s) 491, 859
Bsp1286I GDGCHC 2 cut(s) 1026, 1251
Bsp143I GATC 6 cut(s) 55, 205, 211, 498, 812, 886
BspACI CCGC 3 cut(s) 379, 567, 1090
BspANI GGCC 3 cut(s) 227, 566, 658
BspCNI CTCAG 3 cut(s) 458, 574, 1326
BspDI ATCGAT 1 cut(s) 501
BspLI GGNNCC 5 cut(s) 213, 239, 377, 814, 1551
BspMI ACCTGC 1 cut(s) 73
BspPI GGATC 5 cut(s) 63, 206, 219, 807, 820
BspT104I TTCGAA 2 cut(s) 491, 859
BspTI CTTAAG 1 cut(s) 1033
BspTNI GGTCTC 1 cut(s) 434
BsrFI RCCGGY 1 cut(s) 470
BsrI ACTGG 4 cut(s) 333, 536, 911, 1411
BssAI RCCGGY 1 cut(s) 470
BssECI CCNNGG 3 cut(s) 144, 1042, 1658
BssMI GATC 6 cut(s) 55, 205, 211, 498, 812, 886
BssSI CACGAG 1 cut(s) 1143
BssT1I CCWWGG 1 cut(s) 144
Bst2BI CACGAG 1 cut(s) 1143
Bst2UI CCWGG 5 cut(s) 7, 296, 373, 394, 794
Bst4CI ACNGT 2 cut(s) 989, 1292
BstAFI CTTAAG 1 cut(s) 1033
BstBI TTCGAA 2 cut(s) 491, 859
BstC8I GCNNGC 5 cut(s) 656, 790, 1090, 1211, 1452
BstDEI CTNAG 5 cut(s) 445, 582, 780, 1097, 1334
BstENI CCTNNNNNAGG 1 cut(s) 232
BstF5I GGATG 3 cut(s) 304, 690, 1124
BstHHI GCGC 1 cut(s) 654
BstKTI GATC 6 cut(s) 58, 208, 214, 501, 815, 889
BstMAI GTCTC 6 cut(s) 54, 394, 434, 569, 1054, 1584
BstMBI GATC 6 cut(s) 55, 205, 211, 498, 812, 886
BstMWI GCNNNNNNNGC 3 cut(s) 707, 1089, 1367
BstNI CCWGG 5 cut(s) 7, 296, 373, 394, 794
BstNSI RCATGY 2 cut(s) 792, 1213
BstSCI CCNGG 5 cut(s) 5, 294, 371, 392, 792
BstV1I GCAGC 6 cut(s) 182, 185, 393, 659, 694, 952
BstV2I GAAGAC 1 cut(s) 593
BstX2I RGATCY 4 cut(s) 55, 205, 211, 812
BstYI RGATCY 4 cut(s) 55, 205, 211, 812
Bsu15I ATCGAT 1 cut(s) 501
BsuI GTATCC 2 cut(s) 177, 1349
BsuRI GGCC 3 cut(s) 227, 566, 658
BsuTUI ATCGAT 1 cut(s) 501
BtsCI GGATG 3 cut(s) 304, 690, 1124
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 3 cut(s) 271, 326, 529
BveI ACCTGC 1 cut(s) 73
Cac8I GCNNGC 5 cut(s) 656, 790, 1090, 1211, 1452
CfoI GCGC 1 cut(s) 654
Cfr10I RCCGGY 1 cut(s) 470
Cfr13I GGNCC 1 cut(s) 375
ClaI ATCGAT 1 cut(s) 501
Csp6I GTAC 1 cut(s) 1030
CspAI ACCGGT 1 cut(s) 470
CspCI CAANNNNNGTGG 2 cut(s) 1572, 1607
CviAII CATG 5 cut(s) 118, 789, 884, 1210, 1428
CviQI GTAC 1 cut(s) 1030
DdeI CTNAG 5 cut(s) 445, 582, 780, 1097, 1334
DpnI GATC 6 cut(s) 57, 207, 213, 500, 814, 888
DpnII GATC 6 cut(s) 55, 205, 211, 498, 812, 886
EaeI YGGCCR 1 cut(s) 564
Ecl136II GAGCTC 1 cut(s) 1024
Eco130I CCWWGG 1 cut(s) 144
Eco147I AGGCCT 2 cut(s) 227, 658
Eco24I GRGCYC 1 cut(s) 1026
Eco31I GGTCTC 1 cut(s) 434
Eco47I GGWCC 1 cut(s) 375
Eco53kI GAGCTC 1 cut(s) 1024
EcoICRI GAGCTC 1 cut(s) 1024
EcoNI CCTNNNNNAGG 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 375
EcoRI GAATTC 2 cut(s) 992, 1384
EcoRII CCWGG 5 cut(s) 5, 294, 371, 392, 792
EcoT14I CCWWGG 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 1026
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 5 cut(s) 121, 792, 887, 1213, 1431
FatI CATG 5 cut(s) 117, 788, 883, 1209, 1427
FauI CCCGC 2 cut(s) 386, 1097
Fnu4HI GCNGC 7 cut(s) 171, 174, 382, 567, 673, 683, 941
FokI GGATG 3 cut(s) 311, 677, 1131
FriOI GRGCYC 1 cut(s) 1026
Fsp4HI GCNGC 7 cut(s) 171, 174, 382, 567, 673, 683, 941
FspBI CTAG 5 cut(s) 660, 1053, 1178, 1298, 1523
GlaI GCGC 1 cut(s) 653
GluI GCNGC 7 cut(s) 171, 174, 382, 567, 673, 683, 941
GsuI CTGGAG 4 cut(s) 376, 1394, 1460, 1536
HaeIII GGCC 3 cut(s) 227, 566, 658
HapII CCGG 2 cut(s) 471, 1027
HhaI GCGC 1 cut(s) 654
Hin1II CATG 5 cut(s) 121, 792, 887, 1213, 1431
Hin6I GCGC 1 cut(s) 652
HinP1I GCGC 1 cut(s) 652
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 4 cut(s) 1047, 1056, 1101, 1577
HpaII CCGG 2 cut(s) 471, 1027
HphI GGTGA 2 cut(s) 485, 1313
Hpy188I TCNGA 8 cut(s) 311, 360, 448, 457, 961, 1043, 1329, 1469
HpyAV CCTTC 8 cut(s) 498, 511, 649, 696, 803, 1515, 1545, 1575
HpyCH4III ACNGT 2 cut(s) 989, 1292
HpyCH4IV ACGT 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 3 cut(s) 707, 1089, 1367
HpyF3I CTNAG 5 cut(s) 445, 582, 780, 1097, 1334
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 5 cut(s) 121, 792, 887, 1213, 1431
HspAI GCGC 1 cut(s) 652
Kzo9I GATC 6 cut(s) 55, 205, 211, 498, 812, 886
LmnI GCTCC 3 cut(s) 1029, 1413, 1555
Lsp1109I GCAGC 6 cut(s) 182, 185, 393, 659, 694, 952
LweI GCATC 4 cut(s) 292, 669, 976, 1621
MaeI CTAG 5 cut(s) 660, 1053, 1178, 1298, 1523
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 5 cut(s) 19, 85, 1301, 1413, 1431
MalI GATC 6 cut(s) 57, 207, 213, 500, 814, 888
MboI GATC 6 cut(s) 55, 205, 211, 498, 812, 886
MflI RGATCY 4 cut(s) 55, 205, 211, 812
MhlI GDGCHC 2 cut(s) 1026, 1251
MlyI GAGTC 2 cut(s) 1056, 1586
MmeI TCCRAC 2 cut(s) 520, 1260
Mph1103I ATGCAT 1 cut(s) 307
MroXI GAANNNNTTC 2 cut(s) 1323, 1530
MseI TTAA 3 cut(s) 255, 1034, 1514
MspA1I CMGCKG 1 cut(s) 672
MspCI CTTAAG 1 cut(s) 1033
MspI CCGG 2 cut(s) 471, 1027
MspR9I CCNGG 5 cut(s) 7, 296, 373, 394, 794
Mva1269I GAATGC 2 cut(s) 305, 955
MvaI CCWGG 5 cut(s) 7, 296, 373, 394, 794
MwoI GCNNNNNNNGC 3 cut(s) 707, 1089, 1367
NdeII GATC 6 cut(s) 55, 205, 211, 498, 812, 886
NlaIII CATG 5 cut(s) 121, 792, 887, 1213, 1431
NlaIV GGNNCC 5 cut(s) 213, 239, 377, 814, 1551
NmuCI GTSAC 4 cut(s) 85, 1301, 1413, 1431
NsiI ATGCAT 1 cut(s) 307
NspI RCATGY 2 cut(s) 792, 1213
NspV TTCGAA 2 cut(s) 491, 859
PaeI GCATGC 2 cut(s) 792, 1213
PceI AGGCCT 2 cut(s) 227, 658
PctI GAATGC 2 cut(s) 305, 955
PdmI GAANNNNTTC 2 cut(s) 1323, 1530
PfeI GAWTC 2 cut(s) 1056, 1101
PflMI CCANNNNNTGG 1 cut(s) 295
PinAI ACCGGT 1 cut(s) 470
PkrI GCNGC 7 cut(s) 172, 175, 383, 568, 674, 684, 942
PleI GAGTC 2 cut(s) 1055, 1585
PpsI GAGTC 2 cut(s) 1055, 1585
PpuMI RGGWCCY 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 1026
Psp5II RGGWCCY 1 cut(s) 375
Psp6I CCWGG 5 cut(s) 5, 294, 371, 392, 792
PspGI CCWGG 5 cut(s) 5, 294, 371, 392, 792
PspN4I GGNNCC 5 cut(s) 213, 239, 377, 814, 1551
PspPI GGNCC 1 cut(s) 375
PspPPI RGGWCCY 1 cut(s) 375
PsuI RGATCY 4 cut(s) 55, 205, 211, 812
PvuII CAGCTG 1 cut(s) 672
RsaI GTAC 1 cut(s) 1031
RsaNI GTAC 1 cut(s) 1030
SacI GAGCTC 1 cut(s) 1026
SaqAI TTAA 3 cut(s) 255, 1034, 1514
SatI GCNGC 7 cut(s) 171, 174, 382, 567, 673, 683, 941
Sau3AI GATC 6 cut(s) 55, 205, 211, 498, 812, 886
Sau96I GGNCC 1 cut(s) 375
SchI GAGTC 2 cut(s) 1056, 1586
ScrFI CCNGG 5 cut(s) 7, 296, 373, 394, 794
SduI GDGCHC 2 cut(s) 1026, 1251
SfaNI GCATC 4 cut(s) 292, 669, 976, 1621
SfuI TTCGAA 2 cut(s) 491, 859
SinI GGWCC 1 cut(s) 375
SmlI CTYRAG 2 cut(s) 1033, 1160
SmoI CTYRAG 2 cut(s) 1033, 1160
SphI GCATGC 2 cut(s) 792, 1213
SseBI AGGCCT 2 cut(s) 227, 658
SsiI CCGC 3 cut(s) 379, 567, 1090
SspMI CTAG 5 cut(s) 660, 1053, 1178, 1298, 1523
SstI GAGCTC 1 cut(s) 1026
StuI AGGCCT 2 cut(s) 227, 658
StyD4I CCNGG 5 cut(s) 5, 294, 371, 392, 792
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 2 cut(s) 989, 1292
TaiI ACGT 1 cut(s) 114
TaqI TCGA 7 cut(s) 198, 491, 501, 735, 741, 751, 859
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 2 cut(s) 1056, 1101
Tru1I TTAA 3 cut(s) 255, 1034, 1514
Tru9I TTAA 3 cut(s) 255, 1034, 1514
TscAI CASTG 3 cut(s) 271, 333, 536
TseFI GTSAC 4 cut(s) 85, 1301, 1413, 1431
TseI GCWGC 6 cut(s) 170, 173, 381, 672, 682, 940
Tsp45I GTSAC 4 cut(s) 85, 1301, 1413, 1431
TspDTI ATGAA 5 cut(s) 18, 54, 519, 541, 935
TspGWI ACGGA 2 cut(s) 683, 812
TspRI CASTG 3 cut(s) 271, 333, 536
Van91I CCANNNNNTGG 1 cut(s) 295
Vha464I CTTAAG 1 cut(s) 1033
VpaK11BI GGWCC 1 cut(s) 375
XagI CCTNNNNNAGG 1 cut(s) 232
XapI RAATTY 4 cut(s) 350, 766, 992, 1384
XbaI TCTAGA 2 cut(s) 1052, 1522
XceI RCATGY 2 cut(s) 792, 1213
XcmI CCANNNNNNNNNTGG 1 cut(s) 536
XmnI GAANNNNTTC 2 cut(s) 1323, 1530
XspI CTAG 5 cut(s) 660, 1053, 1178, 1298, 1523
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.