Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014513.1

Orthogroup ID

OG0001713

Physical Location & Seq

Genomic Coordinates Reverse (-)

10586 .. 12187

Gene Structure 1602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014513.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1602 bp

atgagtgatgagacctcaaaactgttggatactcctcagaccgctgaggaattacagcctccgtatgagatcgatgaagcgaaggtacgaagagaaattaaagaaatctgcgaaggtcgggacgaaatacttatgtggtgcttgctttgtttctcaatgttccctgaagatgctgtcataaagaagaaggttctaatccactggtgggttggagaggggttcatagataatttggccgcaggagaaactgctgagaagacggggaataaattcttcaaagtatttttggataaggacattgttcagcccttctacaaaaggcgcaggcctagtgcagacagctgcaagatgcagccttccatccgtaatgctgtgattgagcttgcaaggagaaaaaagttcttcaatttcgatagaaatggaaacccaactgaagatttctctcgctctaacagggcatgtctggtaagaaccatagaaggatccaatgtccgtgaattgccactcctttcaagtcaggagaatgttcaaagtctgatcaatgtcaatgagcatgatctttattttagaccaaactggttctcacagatgaaaagcgtcaaagttttgcagcttgggagatggcattcagacaagcatctcatcgaagtagaggactgtgaattcctgaaaggcttgaagaagatgagagagctccggtacttaagcctccgaggagtctctagaatcacagagcttcctgcttcaatttgcaaagctcgcaatctaagaatcctgaacttgaatggatgttgtgatttggagaaactccctcgtgggataggctcactcaagaacctgacacacctagatatgtatgagtgctacttgataagcggcatgcccaaaggacttgctttgctctccaacctccaagtgctcaaagggtttgtgattagtaaaaggtctggaagccatgactgtaagctagatgatttgtcaaaattggaatatcttcggaagctgagtatccacatcaacaaaaagcaagttgaaacagcagaaggagagctgaattctttggcaaagttcaaaaggctccagtcactttctatatcatggtcacgaatatatgacaagcctcaaactctccagaggattgacaccaagaagctagccagaagaataacaaaactgccttcaatgttaatggctccagaaaaacagccttcaattccagtttctccaaaagagtctccacttcatttggagaaactggagaaacttgacctccattacttcccttattctacgattccagattgcttgaagcctacactccgtggtgccttacagaagctctatatcagaggaggaagcctctcagatctttgtcacatttttaaaggcatggagtgtcgacggactgtccgaatggtgcgcttgaagttcttgaaggaattggaaatggaatggggggaactgcgagacatatttcggaaactaagttacttggaggtcgtcgactgtcctaaactccatttcgaacaatgtgatgcaaatggagtgtggacagaggaagactcgaagcaagtagaagtagcattgagcagcgatgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

533

Amino Acids

61.69

Weight (kDa)

8.97

Isoelectric Point (pI)

54.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45500 AT5G45520 AT5G45520
fragaria_vesca	FvH4_6g22160 FvH4_6g22160
malus_domestica	MD10G1305300.v1.1 MD12G1056400.v1.1
prunus_persica	Prupe.4G034300_v2.0.a1 Prupe.7G078100_v2.0.a1 Prupe.7G078100_v2.0.a1 Prupe.7G078100_v2.0.a1 Prupe.7G078100_v2.0.a1 Prupe.7G078600_v2.0.a1
pyrus_communis	pycom10g25780 pycom12g04920
rosa_chinensis	RchiOBHm_Chr3g0479511 RchiOBHm_Chr5g0005761
rosa_laevigata	RLG00000023563
rosa_multiflora	Rmu_sc0004732.1_g000003 Rmu_sc0010248.1_g000001 Rmu_sc0014513.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070100 Rroxscaffold_6G00402180
rosa_rugosa	Rorug03G0175900 Rorug03G0176000 Rorug03G0176100 Rorug03G0176200 Rorug04G0417900
rosa_samantha	Rh3AG226900 Rh3BG260000 Rh3CG234800 Rh3CG256900 Rh3DG252500 Rh5AG045400 Rh5BG044100 Rh5CG052900 Rh5DG043900
rosa_wichuraiana	Rw0G011120 Rw3G020270 Rw5G004570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1325
AccI	GTMKAC	2 cut(s)	1399, 1503
AciI	CCGC	3 cut(s)	42, 237, 876
AclWI	GGATC	2 cut(s)	477, 490
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	3 cut(s)	269, 662, 1054
AcuI	CTGAAG	2 cut(s)	186, 453
AdeI	CACNNNGTG	1 cut(s)	1322
AfaI	GTAC	2 cut(s)	87, 701
AfiI	CCNNNNNNNGG	1 cut(s)	205
AflII	CTTAAG	1 cut(s)	703
AhdI	GACNNNNNGTC	1 cut(s)	1406
Alw21I	GWGCWC	2 cut(s)	696, 921
Alw26I	GTCTC	4 cut(s)	5, 724, 1239, 1461
AlwI	GGATC	2 cut(s)	477, 490
AoxI	GGCC	2 cut(s)	234, 326
ApeKI	GCWGC	4 cut(s)	342, 352, 610, 1590
ApoI	RAATTY	3 cut(s)	269, 662, 1054
Asp700I	GAANNNNTTC	2 cut(s)	269, 993
AspLEI	GCGC	2 cut(s)	324, 1422
AsuII	TTCGAA	1 cut(s)	1524
AsuNHI	GCTAGC	1 cut(s)	1153
BamHI	GGATCC	1 cut(s)	482
BanI	GGYRCC	1 cut(s)	1325
BanII	GRGCYC	1 cut(s)	696
BarI	GAAGNNNNNNTAC	2 cut(s)	69, 101
BauI	CACGAG	1 cut(s)	813
BbsI	GAAGAC	2 cut(s)	263, 1566
Bbv12I	GWGCWC	2 cut(s)	696, 921
BbvCI	CCTCAGC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	329, 364, 622
BccI	CCATC	2 cut(s)	368, 615
BciVI	GTATCC	2 cut(s)	22, 1019
BclI	TGATCA	1 cut(s)	537
BcoDI	GTCTC	4 cut(s)	5, 724, 1239, 1461
BfaI	CTAG	5 cut(s)	330, 723, 848, 968, 1154
BfrI	CTTAAG	1 cut(s)	703
BfuI	GTATCC	2 cut(s)	22, 1019
BglII	AGATCT	1 cut(s)	1366
BisI	GCNGC	6 cut(s)	237, 343, 353, 611, 877, 1591
BlsI	GCNGC	6 cut(s)	238, 344, 354, 612, 878, 1592
BmeRI	GACNNNNNGTC	1 cut(s)	1406
BmiI	GGNNCC	4 cut(s)	484, 1079, 1194, 1327
BmsI	GCATC	5 cut(s)	160, 339, 646, 1525, 1585
BmtI	GCTAGC	1 cut(s)	1157
BpiI	GAAGAC	2 cut(s)	263, 1566
BplI	GAGNNNNNCTC	4 cut(s)	1344, 1376, 1547, 1579
BpmI	CTGGAG	4 cut(s)	1064, 1115, 1179, 1277
Bpu10I	CCTNAGC	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	1524
BpuEI	CTTGAG	1 cut(s)	815
Bsa29I	ATCGAT	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	712, 1321
BsaWI	WCCGGW	1 cut(s)	696
BsaXI	ACNNNNNCTCC	2 cut(s)	1254, 1284
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse1I	ACTGG	5 cut(s)	206, 581, 1081, 1217, 1260
BseCI	ATCGAT	1 cut(s)	72
BseDI	CCNNGG	2 cut(s)	712, 1321
BseGI	GGATG	2 cut(s)	360, 794
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMII	CTCAG	5 cut(s)	36, 50, 243, 995, 1377
BseNI	ACTGG	5 cut(s)	206, 581, 1081, 1217, 1260
BseRI	GAGGAG	3 cut(s)	24, 729, 1365
BseXI	GCAGC	3 cut(s)	329, 364, 622
BsgI	GTGCAG	1 cut(s)	354
BshFI	GGCC	2 cut(s)	236, 328
BshNI	GGYRCC	1 cut(s)	1325
BshVI	ATCGAT	1 cut(s)	72
BsiHKAI	GWGCWC	2 cut(s)	696, 921
BsiSI	CCGG	1 cut(s)	697
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	4 cut(s)	5, 724, 1239, 1461
BsmFI	GGGAC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	2 cut(s)	236, 328
Bso31I	GGTCTC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	1524
Bsp1286I	GDGCHC	2 cut(s)	696, 921
Bsp143I	GATC	5 cut(s)	69, 482, 537, 556, 1366
BspACI	CCGC	3 cut(s)	42, 237, 876
BspANI	GGCC	2 cut(s)	236, 328
BspCNI	CTCAG	5 cut(s)	37, 49, 244, 996, 1376
BspDI	ATCGAT	1 cut(s)	72
BspLI	GGNNCC	4 cut(s)	484, 1079, 1194, 1327
BspOI	GCTAGC	1 cut(s)	1157
BspPI	GGATC	2 cut(s)	477, 490
BspT104I	TTCGAA	1 cut(s)	1524
BspT107I	GGYRCC	1 cut(s)	1325
BspTI	CTTAAG	1 cut(s)	703
BspTNI	GGTCTC	1 cut(s)	5
BsrI	ACTGG	5 cut(s)	206, 581, 1081, 1217, 1260
BssECI	CCNNGG	2 cut(s)	712, 1321
BssMI	GATC	5 cut(s)	69, 482, 537, 556, 1366
BssSI	CACGAG	1 cut(s)	813
Bst2BI	CACGAG	1 cut(s)	813
Bst4CI	ACNGT	5 cut(s)	24, 659, 962, 1408, 1508
Bst6I	CTCTTC	1 cut(s)	85
BstAFI	CTTAAG	1 cut(s)	703
BstBI	TTCGAA	1 cut(s)	1524
BstC8I	GCNNGC	6 cut(s)	143, 326, 384, 760, 881, 1155
BstDEI	CTNAG	8 cut(s)	36, 45, 252, 767, 1004, 1363, 1484, 1599
BstDSI	CCRYGG	1 cut(s)	1321
BstF5I	GGATG	2 cut(s)	360, 794
BstHHI	GCGC	2 cut(s)	324, 1422
BstKTI	GATC	5 cut(s)	72, 485, 540, 559, 1369
BstMAI	GTCTC	4 cut(s)	5, 724, 1239, 1461
BstMBI	GATC	5 cut(s)	69, 482, 537, 556, 1366
BstMWI	GCNNNNNNNGC	1 cut(s)	759
BstNSI	RCATGY	2 cut(s)	462, 883
BstV1I	GCAGC	3 cut(s)	329, 364, 622
BstV2I	GAAGAC	2 cut(s)	263, 1566
BstX2I	RGATCY	2 cut(s)	482, 1366
BstYI	RGATCY	2 cut(s)	482, 1366
Bsu15I	ATCGAT	1 cut(s)	72
BsuI	GTATCC	2 cut(s)	22, 1019
BsuRI	GGCC	2 cut(s)	236, 328
BsuTUI	ATCGAT	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	1321
BtsCI	GGATG	2 cut(s)	360, 794
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	6 cut(s)	143, 326, 384, 760, 881, 1155
CfoI	GCGC	2 cut(s)	324, 1422
ClaI	ATCGAT	1 cut(s)	72
CseI	GACGC	1 cut(s)	586
Csp6I	GTAC	2 cut(s)	86, 700
CspCI	CAANNNNNGTGG	2 cut(s)	1227, 1262
CviAII	CATG	6 cut(s)	459, 554, 880, 956, 1098, 1390
CviQI	GTAC	2 cut(s)	86, 700
DdeI	CTNAG	8 cut(s)	36, 45, 252, 767, 1004, 1363, 1484, 1599
DpnI	GATC	5 cut(s)	71, 484, 539, 558, 1368
DpnII	GATC	5 cut(s)	69, 482, 537, 556, 1366
DraI	TTTAAA	1 cut(s)	1384
DraIII	CACNNNGTG	1 cut(s)	1322
DriI	GACNNNNNGTC	1 cut(s)	1406
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	1 cut(s)	85
Eam1105I	GACNNNNNGTC	1 cut(s)	1406
EarI	CTCTTC	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	694
Eco147I	AGGCCT	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	696
Eco31I	GGTCTC	1 cut(s)	5
Eco53kI	GAGCTC	1 cut(s)	694
Eco57I	CTGAAG	2 cut(s)	186, 453
EcoICRI	GAGCTC	1 cut(s)	694
EcoRI	GAATTC	2 cut(s)	662, 1054
EcoT38I	GRGCYC	1 cut(s)	696
FaeI	CATG	6 cut(s)	462, 557, 883, 959, 1101, 1393
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	6 cut(s)	458, 553, 879, 955, 1097, 1389
FbaI	TGATCA	1 cut(s)	537
FblI	GTMKAC	2 cut(s)	1399, 1503
Fnu4HI	GCNGC	6 cut(s)	237, 343, 353, 611, 877, 1591
FokI	GGATG	2 cut(s)	347, 801
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	6 cut(s)	237, 343, 353, 611, 877, 1591
FspBI	CTAG	5 cut(s)	330, 723, 848, 968, 1154
GlaI	GCGC	2 cut(s)	323, 1421
GluI	GCNGC	6 cut(s)	237, 343, 353, 611, 877, 1591
GsuI	CTGGAG	4 cut(s)	1064, 1115, 1179, 1277
HaeIII	GGCC	2 cut(s)	236, 328
HapII	CCGG	1 cut(s)	697
HgaI	GACGC	1 cut(s)	586
HhaI	GCGC	2 cut(s)	324, 1422
Hin1II	CATG	6 cut(s)	462, 557, 883, 959, 1101, 1393
Hin6I	GCGC	2 cut(s)	322, 1420
HinP1I	GCGC	2 cut(s)	322, 1420
HincII	GTYRAC	2 cut(s)	1400, 1504
HindII	GTYRAC	2 cut(s)	1400, 1504
HinfI	GANTC	6 cut(s)	717, 726, 771, 1232, 1294, 1562
HpaII	CCGG	1 cut(s)	697
Hpy166II	GTNNAC	3 cut(s)	1400, 1504, 1551
Hpy188I	TCNGA	9 cut(s)	39, 537, 631, 713, 999, 1349, 1366, 1412, 1479
Hpy8I	GTNNAC	3 cut(s)	1400, 1504, 1551
Hpy99I	CGWCG	2 cut(s)	1404, 1505
HpyCH4III	ACNGT	5 cut(s)	24, 659, 962, 1408, 1508
HpyCH4V	TGCA	7 cut(s)	335, 345, 352, 386, 610, 753, 1538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	759
HpyF3I	CTNAG	8 cut(s)	36, 45, 252, 767, 1004, 1363, 1484, 1599
Hsp92II	CATG	6 cut(s)	462, 557, 883, 959, 1101, 1393
HspAI	GCGC	2 cut(s)	322, 1420
Ksp22I	TGATCA	1 cut(s)	537
Kzo9I	GATC	5 cut(s)	69, 482, 537, 556, 1366
LmnI	GCTCC	3 cut(s)	699, 1083, 1198
Lsp1109I	GCAGC	3 cut(s)	329, 364, 622
LweI	GCATC	5 cut(s)	160, 339, 646, 1525, 1585
MaeI	CTAG	5 cut(s)	330, 723, 848, 968, 1154
MaeIII	GTNAC	4 cut(s)	1083, 1101, 1373, 1487
MalI	GATC	5 cut(s)	71, 484, 539, 558, 1368
MboI	GATC	5 cut(s)	69, 482, 537, 556, 1366
MflI	RGATCY	2 cut(s)	482, 1366
MhlI	GDGCHC	2 cut(s)	696, 921
MlyI	GAGTC	3 cut(s)	726, 1241, 1556
MmeI	TCCRAC	3 cut(s)	6, 190, 930
MroXI	GAANNNNTTC	2 cut(s)	269, 993
MseI	TTAA	4 cut(s)	99, 704, 1187, 1383
MspA1I	CMGCKG	2 cut(s)	44, 342
MspCI	CTTAAG	1 cut(s)	703
MspI	CCGG	1 cut(s)	697
Mva1269I	GAATGC	1 cut(s)	625
MwoI	GCNNNNNNNGC	1 cut(s)	759
NdeII	GATC	5 cut(s)	69, 482, 537, 556, 1366
NheI	GCTAGC	1 cut(s)	1153
NlaIII	CATG	6 cut(s)	462, 557, 883, 959, 1101, 1393
NlaIV	GGNNCC	4 cut(s)	484, 1079, 1194, 1327
NmuCI	GTSAC	3 cut(s)	1083, 1101, 1373
NspI	RCATGY	2 cut(s)	462, 883
NspV	TTCGAA	1 cut(s)	1524
PaeI	GCATGC	1 cut(s)	883
PceI	AGGCCT	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	1 cut(s)	1408
PctI	GAATGC	1 cut(s)	625
PdmI	GAANNNNTTC	2 cut(s)	269, 993
PfeI	GAWTC	3 cut(s)	726, 771, 1294
PkrI	GCNGC	6 cut(s)	238, 344, 354, 612, 878, 1592
PleI	GAGTC	3 cut(s)	725, 1240, 1556
PpsI	GAGTC	3 cut(s)	725, 1240, 1556
Psp124BI	GAGCTC	1 cut(s)	696
PspN4I	GGNNCC	4 cut(s)	484, 1079, 1194, 1327
PsuI	RGATCY	2 cut(s)	482, 1366
PvuII	CAGCTG	1 cut(s)	342
RsaI	GTAC	2 cut(s)	87, 701
RsaNI	GTAC	2 cut(s)	86, 700
SacI	GAGCTC	1 cut(s)	696
SalI	GTCGAC	2 cut(s)	1398, 1502
SaqAI	TTAA	4 cut(s)	99, 704, 1187, 1383
SatI	GCNGC	6 cut(s)	237, 343, 353, 611, 877, 1591
Sau3AI	GATC	5 cut(s)	69, 482, 537, 556, 1366
SchI	GAGTC	3 cut(s)	726, 1241, 1556
SduI	GDGCHC	2 cut(s)	696, 921
SfaNI	GCATC	5 cut(s)	160, 339, 646, 1525, 1585
SfuI	TTCGAA	1 cut(s)	1524
SmlI	CTYRAG	2 cut(s)	703, 830
SmoI	CTYRAG	2 cut(s)	703, 830
SphI	GCATGC	1 cut(s)	883
SseBI	AGGCCT	1 cut(s)	328
SsiI	CCGC	3 cut(s)	42, 237, 876
SspMI	CTAG	5 cut(s)	330, 723, 848, 968, 1154
SstI	GAGCTC	1 cut(s)	696
StuI	AGGCCT	1 cut(s)	328
TaaI	ACNGT	5 cut(s)	24, 659, 962, 1408, 1508
TaqI	TCGA	7 cut(s)	72, 411, 645, 1399, 1503, 1524, 1565
TauI	GCSGC	2 cut(s)	239, 879
TfiI	GAWTC	3 cut(s)	726, 771, 1294
Tru1I	TTAA	4 cut(s)	99, 704, 1187, 1383
Tru9I	TTAA	4 cut(s)	99, 704, 1187, 1383
TscAI	CASTG	1 cut(s)	206
TseFI	GTSAC	3 cut(s)	1083, 1101, 1373
TseI	GCWGC	4 cut(s)	342, 352, 610, 1590
Tsp45I	GTSAC	3 cut(s)	1083, 1101, 1373
TspDTI	ATGAA	4 cut(s)	90, 211, 605, 1232
TspGWI	ACGGA	5 cut(s)	51, 353, 482, 1310, 1417
TspRI	CASTG	1 cut(s)	206
Vha464I	CTTAAG	1 cut(s)	703
XapI	RAATTY	3 cut(s)	269, 662, 1054
XbaI	TCTAGA	1 cut(s)	722
XceI	RCATGY	2 cut(s)	462, 883
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206
XmiI	GTMKAC	2 cut(s)	1399, 1503
XmnI	GAANNNNTTC	2 cut(s)	269, 993
XspI	CTAG	5 cut(s)	330, 723, 848, 968, 1154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.