Rh5DG043900

disease resistance RPP13-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001713
Physical Location & Seq
Forward (+)
3637383 .. 3638660
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG043900.1

Sequence Viewer

Length: 1278 bp
ATGCAGTCTTCCATCCGTGATGCTGTGATTGAGCTTGCAAGGAGAGAAAACTTCTTCGATTTCGATATAAATGGAAACCCAACTGAAGATTTCTCTTGCTCTAACAGGGCATGCCTGGTAAGAACCATAGAAGGATCCAATGTCCGTGAATTGCCACTCCTTTCAAGTCAGGAGAATGTTCAAAGTCTGATCAATGTCAATGAGCATGATCTTTATTTTAGACCAAACTGGTTCTCACAGATGAAAAGGGTCAAAGTTTTGCAGCTTGGGAGATGGCATTCAGACAAGCATCTCATCGAAGTAGAGGACTGTGAATTCCTGAAAGGCTTGAAGAAGATGAGAGAGCTCCGGTACTTAAGCCTCCGAGGAGTCTCTAGAATCACAGAGCTTCCTGCTTCAATTTGCAAAGCCCGCAATCTAAGAATCCTGAACCTGAATGGATGTTGTGATTTGGAGAAACTCCCTCGTGGGATAGGCTCACTCAAGAACCTGACACACCTGGATATGTATGAGTGCTACTTGATAAGCGGCATGCCCAAAGGACTTGCTTTGCTCTCCAACCTCCAAGTGCTCAAAGGGTTTGTGATTAGTAGAAGGTCGGGAAGCCAAGACTGTAAGCTAGATGACTTGTCAAAATTGGAATATCTTCGGAAGCTGAGTATCCACATAGACAGAAATCAAACTACAACAGCAGAAAGAGAGCTGAATTCTTTGGCAAAGTTCAAAAAGCTCCAGTCACTTTCTATATCATGGTCACGAATATATGACAAGCCTGCAACTCATTCTCTCCAAACTCTCCAGAGGATTGTCACCAAGAAGCTAACCAGAGCGAAAAGAATAACAAAACTGCCTTCAATGTTCATGGCTCCAGAAAAACTTCCTTCAATGTCAATGGCTCCAGAAAAACTGCCTTCAATTCCAGAGTCTCCACTTCATTTGGAGAAACTTGACCTCCATTACTTCCCTCATTCTACGATGCCAGATTGGTTGAAGCCAACGCTCCTCGGTAAGCTAAAGAAGCTCTATATCAGAGGAGGAATCCTCTCAGATCTTTGTCACAATGGCAGCAATTGTACATGGACTGTCCAAATGGTGCGCTTGAAGTTCTTGGATGAATTGGAAATGGATTGGGAAAAACTGCGAGGCTTGTTTCCGAAACTGAGTTACTTGGAGGTAGTCAAATGTCGTAAACTCCATTTCAAACAATGTGATGTCAATGGAGTGTGGAAAGAGGAAGACTCGGAGCAAGTAGAACTAGCATCGAGCAGCAATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

425

Amino Acids

49.04

Weight (kDa)

9.22

Isoelectric Point (pI)

52.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 78 - 297 1.1e-25 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 412, 528
AclWI GGATC 2 cut(s) 129, 142
AcsI RAATTY 2 cut(s) 314, 706
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 2 cut(s) 353, 1075
AflII CTTAAG 1 cut(s) 355
AjnI CCWGG 2 cut(s) 114, 498
Alw21I GWGCWC 2 cut(s) 348, 573
Alw26I GTCTC 2 cut(s) 376, 930
AlwI GGATC 2 cut(s) 129, 142
ApeKI GCWGC 3 cut(s) 262, 1065, 1266
ApoI RAATTY 2 cut(s) 314, 706
Asp700I GAANNNNTTC 2 cut(s) 645, 876
AspLEI GCGC 1 cut(s) 1098
AsuHPI GGTGA 1 cut(s) 802
BamHI GGATCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 348
BauI CACGAG 1 cut(s) 465
BbsI GAAGAC 1 cut(s) 1242
Bbv12I GWGCWC 2 cut(s) 348, 573
BbvI GCAGC 2 cut(s) 274, 1077
BccI CCATC 2 cut(s) 20, 267
BciT130I CCWGG 2 cut(s) 116, 500
BciVI GTATCC 1 cut(s) 671
BclI TGATCA 1 cut(s) 189
BcoDI GTCTC 2 cut(s) 376, 930
BfaI CTAG 3 cut(s) 375, 620, 1256
BfrI CTTAAG 1 cut(s) 355
BfuI GTATCC 1 cut(s) 671
BglII AGATCT 1 cut(s) 1048
BisI GCNGC 4 cut(s) 263, 529, 1066, 1267
BlsI GCNGC 4 cut(s) 264, 530, 1067, 1268
Bme1390I CCNGG 2 cut(s) 116, 500
BmiI GGNNCC 3 cut(s) 136, 867, 897
BmrFI CCNGG 2 cut(s) 116, 500
BmsI GCATC 4 cut(s) 10, 298, 966, 1268
BpiI GAAGAC 1 cut(s) 1242
BplI GAGNNNNNCTC 4 cut(s) 1026, 1058, 1223, 1255
BpmI CTGGAG 4 cut(s) 716, 782, 852, 882
BpuEI CTTGAG 1 cut(s) 467
BsaJI CCNNGG 2 cut(s) 364, 1003
BsaWI WCCGGW 1 cut(s) 348
BsaXI ACNNNNNCTCC 2 cut(s) 936, 966
Bse1I ACTGG 2 cut(s) 233, 733
Bse3DI GCAATG 1 cut(s) 1276
BseBI CCWGG 2 cut(s) 116, 500
BseDI CCNNGG 2 cut(s) 364, 1003
BseGI GGATG 3 cut(s) 12, 446, 1117
BseMI GCAATG 1 cut(s) 1276
BseMII CTCAG 3 cut(s) 647, 1059, 1151
BseNI ACTGG 2 cut(s) 233, 733
BseRI GAGGAG 3 cut(s) 381, 992, 1047
BseXI GCAGC 2 cut(s) 274, 1077
BsiHKAI GWGCWC 2 cut(s) 348, 573
BsiSI CCGG 1 cut(s) 349
BsmAI GTCTC 2 cut(s) 376, 930
BsmI GAATGC 1 cut(s) 277
Bsp1286I GDGCHC 2 cut(s) 348, 573
Bsp1407I TGTACA 1 cut(s) 1073
Bsp143I GATC 4 cut(s) 134, 189, 208, 1048
BspACI CCGC 2 cut(s) 412, 528
BspCNI CTCAG 3 cut(s) 648, 1058, 1152
BspLI GGNNCC 3 cut(s) 136, 867, 897
BspPI GGATC 2 cut(s) 129, 142
BspTI CTTAAG 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 1276
BsrGI TGTACA 1 cut(s) 1073
BsrI ACTGG 2 cut(s) 233, 733
BssECI CCNNGG 2 cut(s) 364, 1003
BssMI GATC 4 cut(s) 134, 189, 208, 1048
BssSI CACGAG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 465
Bst2UI CCWGG 2 cut(s) 116, 500
Bst4CI ACNGT 3 cut(s) 311, 614, 1084
BstAFI CTTAAG 1 cut(s) 355
BstAUI TGTACA 1 cut(s) 1073
BstC8I GCNNGC 5 cut(s) 36, 112, 412, 533, 774
BstDEI CTNAG 5 cut(s) 419, 656, 1045, 1160, 1275
BstF5I GGATG 3 cut(s) 12, 446, 1117
BstHHI GCGC 1 cut(s) 1098
BstKTI GATC 4 cut(s) 137, 192, 211, 1051
BstMAI GTCTC 2 cut(s) 376, 930
BstMBI GATC 4 cut(s) 134, 189, 208, 1048
BstMWI GCNNNNNNNGC 2 cut(s) 411, 1018
BstNI CCWGG 2 cut(s) 116, 500
BstNSI RCATGY 2 cut(s) 114, 535
BstSCI CCNGG 2 cut(s) 114, 498
BstV1I GCAGC 2 cut(s) 274, 1077
BstV2I GAAGAC 1 cut(s) 1242
BstX2I RGATCY 2 cut(s) 134, 1048
BstYI RGATCY 2 cut(s) 134, 1048
BsuI GTATCC 1 cut(s) 671
BtsCI GGATG 3 cut(s) 12, 446, 1117
Cac8I GCNNGC 5 cut(s) 36, 112, 412, 533, 774
CfoI GCGC 1 cut(s) 1098
Csp6I GTAC 2 cut(s) 352, 1074
CspCI CAANNNNNGTGG 2 cut(s) 918, 953
CviAII CATG 6 cut(s) 111, 206, 532, 750, 862, 1077
CviQI GTAC 2 cut(s) 352, 1074
DdeI CTNAG 5 cut(s) 419, 656, 1045, 1160, 1275
DpnI GATC 4 cut(s) 136, 191, 210, 1050
DpnII GATC 4 cut(s) 134, 189, 208, 1048
Ecl136II GAGCTC 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 348
Eco53kI GAGCTC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 105
EcoICRI GAGCTC 1 cut(s) 346
EcoRI GAATTC 2 cut(s) 314, 706
EcoRII CCWGG 2 cut(s) 114, 498
EcoT38I GRGCYC 1 cut(s) 348
FaeI CATG 6 cut(s) 114, 209, 535, 753, 865, 1080
FatI CATG 6 cut(s) 110, 205, 531, 749, 861, 1076
FauI CCCGC 1 cut(s) 419
FbaI TGATCA 1 cut(s) 189
Fnu4HI GCNGC 4 cut(s) 263, 529, 1066, 1267
FokI GGATG 2 cut(s) 453, 1124
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 4 cut(s) 263, 529, 1066, 1267
FspBI CTAG 3 cut(s) 375, 620, 1256
GlaI GCGC 1 cut(s) 1097
GluI GCNGC 4 cut(s) 263, 529, 1066, 1267
GsuI CTGGAG 4 cut(s) 716, 782, 852, 882
HapII CCGG 1 cut(s) 349
HhaI GCGC 1 cut(s) 1098
Hin1II CATG 6 cut(s) 114, 209, 535, 753, 865, 1080
Hin6I GCGC 1 cut(s) 1096
HinP1I GCGC 1 cut(s) 1096
HinfI GANTC 6 cut(s) 369, 378, 423, 923, 1038, 1238
HpaII CCGG 1 cut(s) 349
HphI GGTGA 1 cut(s) 802
Hpy166II GTNNAC 1 cut(s) 1190
Hpy188I TCNGA 8 cut(s) 189, 283, 365, 651, 1031, 1048, 1155, 1243
Hpy8I GTNNAC 1 cut(s) 1190
HpyAV CCTTC 5 cut(s) 125, 588, 861, 891, 921
HpyCH4III ACNGT 3 cut(s) 311, 614, 1084
HpyCH4V TGCA 5 cut(s) 4, 38, 262, 405, 776
HpyF10VI GCNNNNNNNGC 2 cut(s) 411, 1018
HpyF3I CTNAG 5 cut(s) 419, 656, 1045, 1160, 1275
Hsp92II CATG 6 cut(s) 114, 209, 535, 753, 865, 1080
HspAI GCGC 1 cut(s) 1096
Ksp22I TGATCA 1 cut(s) 189
Kzo9I GATC 4 cut(s) 134, 189, 208, 1048
LmnI GCTCC 6 cut(s) 351, 735, 871, 901, 1005, 1243
Lsp1109I GCAGC 2 cut(s) 274, 1077
LweI GCATC 4 cut(s) 10, 298, 966, 1268
MaeI CTAG 3 cut(s) 375, 620, 1256
MaeIII GTNAC 5 cut(s) 735, 753, 808, 1055, 1163
MalI GATC 4 cut(s) 136, 191, 210, 1050
MboI GATC 4 cut(s) 134, 189, 208, 1048
MboII GAAGA 6 cut(s) 46, 98, 343, 346, 638, 1247
MfeI CAATTG 1 cut(s) 1069
MflI RGATCY 2 cut(s) 134, 1048
MhlI GDGCHC 2 cut(s) 348, 573
MluCI AATT 8 cut(s) 149, 314, 399, 635, 706, 915, 1069, 1115
MlyI GAGTC 3 cut(s) 378, 932, 1232
MmeI TCCRAC 1 cut(s) 582
MroXI GAANNNNTTC 2 cut(s) 645, 876
MseI TTAA 1 cut(s) 356
MspCI CTTAAG 1 cut(s) 355
MspI CCGG 1 cut(s) 349
MspR9I CCNGG 2 cut(s) 116, 500
MunI CAATTG 1 cut(s) 1069
Mva1269I GAATGC 1 cut(s) 277
MvaI CCWGG 2 cut(s) 116, 500
MwoI GCNNNNNNNGC 2 cut(s) 411, 1018
NdeII GATC 4 cut(s) 134, 189, 208, 1048
NlaIII CATG 6 cut(s) 114, 209, 535, 753, 865, 1080
NlaIV GGNNCC 3 cut(s) 136, 867, 897
NmuCI GTSAC 4 cut(s) 735, 753, 808, 1055
NspI RCATGY 2 cut(s) 114, 535
PaeI GCATGC 2 cut(s) 114, 535
PctI GAATGC 1 cut(s) 277
PdmI GAANNNNTTC 2 cut(s) 645, 876
PfeI GAWTC 3 cut(s) 378, 423, 1038
PkrI GCNGC 4 cut(s) 264, 530, 1067, 1268
PleI GAGTC 3 cut(s) 377, 931, 1232
PpsI GAGTC 3 cut(s) 377, 931, 1232
Psp124BI GAGCTC 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 114, 498
PspGI CCWGG 2 cut(s) 114, 498
PspN4I GGNNCC 3 cut(s) 136, 867, 897
PsuI RGATCY 2 cut(s) 134, 1048
RsaI GTAC 2 cut(s) 353, 1075
RsaNI GTAC 2 cut(s) 352, 1074
SacI GAGCTC 1 cut(s) 348
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 4 cut(s) 263, 529, 1066, 1267
Sau3AI GATC 4 cut(s) 134, 189, 208, 1048
SchI GAGTC 3 cut(s) 378, 932, 1232
ScrFI CCNGG 2 cut(s) 116, 500
SduI GDGCHC 2 cut(s) 348, 573
SfaNI GCATC 4 cut(s) 10, 298, 966, 1268
SmlI CTYRAG 2 cut(s) 355, 482
SmoI CTYRAG 2 cut(s) 355, 482
SphI GCATGC 2 cut(s) 114, 535
Sse9I AATT 8 cut(s) 149, 314, 399, 635, 706, 915, 1069, 1115
SsiI CCGC 2 cut(s) 412, 528
SspMI CTAG 3 cut(s) 375, 620, 1256
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 2 cut(s) 114, 498
TaaI ACNGT 3 cut(s) 311, 614, 1084
TaqI TCGA 4 cut(s) 57, 63, 297, 1262
TasI AATT 8 cut(s) 149, 314, 399, 635, 706, 915, 1069, 1115
TatI WGTACW 1 cut(s) 1073
TauI GCSGC 1 cut(s) 531
TfiI GAWTC 3 cut(s) 378, 423, 1038
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TseFI GTSAC 4 cut(s) 735, 753, 808, 1055
TseI GCWGC 3 cut(s) 262, 1065, 1266
Tsp45I GTSAC 4 cut(s) 735, 753, 808, 1055
TspDTI ATGAA 4 cut(s) 257, 850, 923, 1128
TspGWI ACGGA 2 cut(s) 5, 134
Vha464I CTTAAG 1 cut(s) 355
XapI RAATTY 2 cut(s) 314, 706
XbaI TCTAGA 1 cut(s) 374
XceI RCATGY 2 cut(s) 114, 535
XmnI GAANNNNTTC 2 cut(s) 645, 876
XspI CTAG 3 cut(s) 375, 620, 1256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.