Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004988.1

Orthogroup ID

OG0004836

Physical Location & Seq

Genomic Coordinates Forward (+)

81843 .. 86808

Gene Structure 4966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atgtttgcggtcgattgttttatctcaacaaactctaagtttggagaactctacaagctccaagcttggagcgagcacgaacccccacatgggtccctgtatgctgacgtgtcagtgggtcagggtgctgacatggcggtgggagcttccgatggcaggttcggtaggtttcccgcaggttcttggggtggggcatccggttctggactcctgggatcgagttcttcaatgtgtgagcctctaaaccttgctcgtccggaagtggtcggcatctcttggttgcgctgctaccggatgggcggtgggattctaaagtctgtccttgggatgactcgatataatggcttcgatagtggcaatgcggtgaagtatggcgggtggttactagatgtggcagtgatgcgtgcaacaggacgcactggaagagtagattggaatgatgccaggagaaagagcagtgctaaaggagttgcctctccaagcttcttcaaggttgttgtggatgaggttcttgaagatgggatgcttgaaattgaaggttatgttgcgaggaactatgaagatttcctgggatgctcagtagtcctcactgatccgaaaggttctatgtggccaatggaactcaaaaggagcaatggcagcgtttggttgaaaaatggaggtgatgaagcctttacaagagctaagaggttcaaatccaaccatccatgtcttgctgtcagaatgcaaccctcctacctgttaaggggtttgaaattgaatgcaacctttgtgaatgaaaatatctgtgcaacaggcgccactcgcaaaatcaagctacagattccaaatgggaaaacctggtctgcaaagtgctctgtctacttatgcatgaacaaagactatgcaaaaatctgcagtggttggacaaagtttgcagcggaaaataagctgcaagtaggggatgcttgtgcgttggagctgataaaggagtgccctaaacttacattcttggttcacatattccgagctaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

338

Amino Acids

36.91

Weight (kDa)

9.11

Isoelectric Point (pI)

30.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	244 - 338	5.5e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13840 FvH4_1g14720 FvH4_2g29240 FvH4_2g29322 FvH4_2g29350 FvH4_3g34770 FvH4_7g25080
malus_domestica	MD05G1037200.v1.1
prunus_persica	Prupe.7G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103581 RchiOBHm_Chr5g0062511
rosa_laevigata	RLG00000017246 RLG00000035562
rosa_multiflora	Rmu_co8088552.1_g000001 Rmu_sc0001530.1_g000008 Rmu_sc0001852.1_g000021 Rmu_sc0004988.1_g000026
rosa_roxburghii	Rroxscaffold_1G00018100 Rroxscaffold_2G00139510
rosa_rugosa	Rorug02G0115900 Rorug05G0350300 Rorug05G0350300
rosa_samantha	Rh2AG164200 Rh2BG171400 Rh2CG170900 Rh2DG169500 Rh5AG410300 Rh5BG424300 Rh5DG438600
rosa_wichuraiana	Rw2G012910 Rw5G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	147, 167
AccB1I	GGYRCC	1 cut(s)	797
AccI	GTMKAC	1 cut(s)	861
AccIII	TCCGGA	1 cut(s)	256
AciI	CCGC	7 cut(s)	8, 137, 174, 300, 362, 375, 920
AclWI	GGATC	2 cut(s)	223, 587
AcoI	YGGCCR	1 cut(s)	611
AcyI	GRCGYC	1 cut(s)	798
AfiI	CCNNNNNNNGG	4 cut(s)	89, 90, 156, 745
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	9 cut(s)	228, 490, 515, 530, 536, 652, 694, 754, 760
AjiI	CACGTC	1 cut(s)	109
AjnI	CCWGG	4 cut(s)	210, 443, 567, 839
AjuI	GAANNNNNNNTTGG	2 cut(s)	415, 447
AluBI	AGCT	9 cut(s)	58, 65, 146, 483, 683, 817, 931, 961, 1010
AluI	AGCT	9 cut(s)	58, 65, 146, 483, 683, 817, 931, 961, 1010
Alw21I	GWGCWC	2 cut(s)	78, 857
AlwI	GGATC	2 cut(s)	223, 587
Aor13HI	TCCGGA	1 cut(s)	256
AoxI	GGCC	1 cut(s)	611
ApeKI	GCWGC	4 cut(s)	285, 639, 917, 931
AspLEI	GCGC	2 cut(s)	285, 800
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	2 cut(s)	376, 674
AvaII	GGWCC	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	977
BalI	TGGCCA	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	797
Bbv12I	GWGCWC	2 cut(s)	78, 857
BbvI	GCAGC	4 cut(s)	272, 651, 918, 929
BccI	CCATC	4 cut(s)	146, 289, 512, 711
BciT130I	CCWGG	4 cut(s)	212, 445, 569, 841
BfaI	CTAG	1 cut(s)	386
BfmI	CTRYAG	2 cut(s)	818, 895
BfoI	RGCGCY	1 cut(s)	801
BfuAI	ACCTGC	2 cut(s)	147, 167
BisI	GCNGC	4 cut(s)	286, 640, 918, 932
BlsI	GCNGC	4 cut(s)	287, 641, 919, 933
Bme1390I	CCNGG	4 cut(s)	212, 445, 569, 841
Bme18I	GGWCC	1 cut(s)	93
BmgBI	CACGTC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	3 cut(s)	94, 95, 799
BmrFI	CCNGG	4 cut(s)	212, 445, 569, 841
BmsI	GCATC	7 cut(s)	203, 279, 390, 430, 513, 563, 934
BsaHI	GRCGYC	1 cut(s)	798
BsaJI	CCNNGG	3 cut(s)	211, 322, 568
BsaWI	WCCGGW	3 cut(s)	197, 256, 291
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 90, 156, 745
Bse1I	ACTGG	1 cut(s)	424
Bse3DI	GCAATG	2 cut(s)	364, 640
BseAI	TCCGGA	1 cut(s)	256
BseBI	CCWGG	4 cut(s)	212, 445, 569, 841
BseDI	CCNNGG	3 cut(s)	211, 322, 568
BseGI	GGATG	8 cut(s)	194, 300, 333, 508, 528, 578, 703, 949
BseLI	CCNNNNNNNGG	4 cut(s)	89, 90, 156, 745
BseMI	GCAATG	2 cut(s)	364, 640
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	1 cut(s)	424
BseSI	GKGCMC	1 cut(s)	977
BseXI	GCAGC	4 cut(s)	272, 651, 918, 929
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	613
BshNI	GGYRCC	1 cut(s)	797
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	2 cut(s)	78, 857
BsiSI	CCGG	3 cut(s)	198, 257, 292
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	4 cut(s)	89, 90, 156, 745
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	2 cut(s)	729, 766
BsnI	GGCC	1 cut(s)	613
Bsp1286I	GDGCHC	3 cut(s)	78, 857, 977
Bsp13I	TCCGGA	1 cut(s)	256
Bsp143I	GATC	2 cut(s)	215, 592
BspACI	CCGC	7 cut(s)	8, 137, 174, 300, 362, 375, 920
BspANI	GGCC	1 cut(s)	613
BspCNI	CTCAG	1 cut(s)	590
BspEI	TCCGGA	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	94, 95, 799
BspMAI	CTGCAG	1 cut(s)	899
BspMI	ACCTGC	2 cut(s)	147, 167
BspPI	GGATC	2 cut(s)	223, 587
BspT107I	GGYRCC	1 cut(s)	797
BsrDI	GCAATG	2 cut(s)	364, 640
BsrI	ACTGG	1 cut(s)	424
BssECI	CCNNGG	3 cut(s)	211, 322, 568
BssMI	GATC	2 cut(s)	215, 592
BssNI	GRCGYC	1 cut(s)	798
BssT1I	CCWWGG	1 cut(s)	322
Bst2UI	CCWGG	4 cut(s)	212, 445, 569, 841
Bst6I	CTCTTC	1 cut(s)	418
BstACI	GRCGYC	1 cut(s)	798
BstC8I	GCNNGC	2 cut(s)	74, 405
BstDEI	CTNAG	3 cut(s)	36, 577, 684
BstF5I	GGATG	8 cut(s)	194, 300, 333, 508, 528, 578, 703, 949
BstH2I	RGCGCY	1 cut(s)	801
BstHHI	GCGC	2 cut(s)	285, 800
BstKTI	GATC	2 cut(s)	218, 595
BstMBI	GATC	2 cut(s)	215, 592
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 143, 639, 797, 804
BstNI	CCWGG	4 cut(s)	212, 445, 569, 841
BstSCI	CCNGG	4 cut(s)	210, 443, 567, 839
BstSFI	CTRYAG	2 cut(s)	818, 895
BstSLI	GKGCMC	1 cut(s)	977
BstV1I	GCAGC	4 cut(s)	272, 651, 918, 929
BsuRI	GGCC	1 cut(s)	613
BtrI	CACGTC	1 cut(s)	109
BtsCI	GGATG	8 cut(s)	194, 300, 333, 508, 528, 578, 703, 949
BtsI	GCAGTG	3 cut(s)	402, 463, 904
BtsIMutI	CAGTG	6 cut(s)	120, 402, 417, 463, 588, 904
BveI	ACCTGC	2 cut(s)	147, 167
Cac8I	GCNNGC	2 cut(s)	74, 405
CfoI	GCGC	2 cut(s)	285, 800
Cfr13I	GGNCC	1 cut(s)	93
CseI	GACGC	1 cut(s)	423
CsiI	ACCWGGT	1 cut(s)	839
CviAII	CATG	4 cut(s)	89, 133, 708, 871
DdeI	CTNAG	3 cut(s)	36, 577, 684
DinI	GGCGCC	1 cut(s)	799
DpnI	GATC	2 cut(s)	217, 594
DpnII	GATC	2 cut(s)	215, 592
EaeI	YGGCCR	1 cut(s)	611
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRII	CCWGG	4 cut(s)	210, 443, 567, 839
EcoT14I	CCWWGG	1 cut(s)	322
EcoT22I	ATGCAT	1 cut(s)	872
EgeI	GGCGCC	1 cut(s)	799
EheI	GGCGCC	1 cut(s)	799
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	4 cut(s)	92, 136, 711, 874
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	4 cut(s)	88, 132, 707, 870
FauI	CCCGC	2 cut(s)	181, 368
FblI	GTMKAC	1 cut(s)	861
Fnu4HI	GCNGC	4 cut(s)	286, 640, 918, 932
FokI	GGATG	8 cut(s)	181, 307, 340, 515, 535, 585, 690, 956
Fsp4HI	GCNGC	4 cut(s)	286, 640, 918, 932
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	2 cut(s)	284, 799
GluI	GCNGC	4 cut(s)	286, 640, 918, 932
HaeII	RGCGCY	1 cut(s)	801
HaeIII	GGCC	1 cut(s)	613
HapII	CCGG	3 cut(s)	198, 257, 292
HgaI	GACGC	1 cut(s)	423
HhaI	GCGC	2 cut(s)	285, 800
Hin1I	GRCGYC	1 cut(s)	798
Hin1II	CATG	4 cut(s)	92, 136, 711, 874
Hin6I	GCGC	2 cut(s)	283, 798
HinP1I	GCGC	2 cut(s)	283, 798
HindIII	AAGCTT	2 cut(s)	63, 481
HinfI	GANTC	4 cut(s)	207, 307, 331, 823
HpaII	CCGG	3 cut(s)	198, 257, 292
HphI	GGTGA	2 cut(s)	376, 674
Hpy166II	GTNNAC	2 cut(s)	862, 997
Hpy188I	TCNGA	4 cut(s)	151, 597, 722, 1007
Hpy188III	TCNNGA	3 cut(s)	204, 257, 512
Hpy8I	GTNNAC	2 cut(s)	862, 997
HpyAV	CCTTC	1 cut(s)	530
HpyCH4IV	ACGT	1 cut(s)	108
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 143, 639, 797, 804
HpyF3I	CTNAG	3 cut(s)	36, 577, 684
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	798
Hsp92II	CATG	4 cut(s)	92, 136, 711, 874
HspAI	GCGC	2 cut(s)	283, 798
KasI	GGCGCC	1 cut(s)	797
KflI	GGGWCCC	1 cut(s)	93
Kpn2I	TCCGGA	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	215, 592
LmnI	GCTCC	5 cut(s)	63, 69, 143, 630, 958
Lsp1109I	GCAGC	4 cut(s)	272, 651, 918, 929
LweI	GCATC	7 cut(s)	203, 279, 390, 430, 513, 563, 934
MabI	ACCWGGT	1 cut(s)	839
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	381
MalI	GATC	2 cut(s)	217, 594
MboI	GATC	2 cut(s)	215, 592
MboII	GAAGA	5 cut(s)	216, 435, 478, 527, 572
MhlI	GDGCHC	3 cut(s)	78, 857, 977
MlsI	TGGCCA	1 cut(s)	613
MluCI	AATT	3 cut(s)	531, 755, 1012
MluNI	TGGCCA	1 cut(s)	613
Mly113I	GGCGCC	1 cut(s)	798
MlyI	GAGTC	2 cut(s)	201, 325
MmeI	TCCRAC	3 cut(s)	723, 884, 936
MnlI	CCTC	8 cut(s)	249, 484, 499, 543, 596, 653, 681, 742
Mox20I	TGGCCA	1 cut(s)	613
Mph1103I	ATGCAT	1 cut(s)	872
MroI	TCCGGA	1 cut(s)	256
MscI	TGGCCA	1 cut(s)	613
MseI	TTAA	2 cut(s)	743, 1015
MslI	CAYNNNNRTG	1 cut(s)	137
Msp20I	TGGCCA	1 cut(s)	613
MspA1I	CMGCKG	1 cut(s)	920
MspI	CCGG	3 cut(s)	198, 257, 292
MspR9I	CCNGG	4 cut(s)	212, 445, 569, 841
Mva1269I	GAATGC	2 cut(s)	729, 766
MvaI	CCWGG	4 cut(s)	212, 445, 569, 841
MwoI	GCNNNNNNNGC	5 cut(s)	134, 143, 639, 797, 804
NarI	GGCGCC	1 cut(s)	798
NdeII	GATC	2 cut(s)	215, 592
NlaIII	CATG	4 cut(s)	92, 136, 711, 874
NlaIV	GGNNCC	3 cut(s)	94, 95, 799
NsiI	ATGCAT	1 cut(s)	872
PctI	GAATGC	2 cut(s)	729, 766
PfeI	GAWTC	2 cut(s)	307, 823
PkrI	GCNGC	4 cut(s)	287, 641, 919, 933
PleI	GAGTC	2 cut(s)	201, 325
PluTI	GGCGCC	1 cut(s)	801
PpsI	GAGTC	2 cut(s)	201, 325
PpuMI	RGGWCCY	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	93
Psp6I	CCWGG	4 cut(s)	210, 443, 567, 839
PspGI	CCWGG	4 cut(s)	210, 443, 567, 839
PspN4I	GGNNCC	3 cut(s)	94, 95, 799
PspPI	GGNCC	1 cut(s)	93
PspPPI	RGGWCCY	1 cut(s)	93
PstI	CTGCAG	1 cut(s)	899
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	743, 1015
SatI	GCNGC	4 cut(s)	286, 640, 918, 932
Sau3AI	GATC	2 cut(s)	215, 592
Sau96I	GGNCC	1 cut(s)	93
SchI	GAGTC	2 cut(s)	201, 325
ScrFI	CCNGG	4 cut(s)	212, 445, 569, 841
SduI	GDGCHC	3 cut(s)	78, 857, 977
SexAI	ACCWGGT	1 cut(s)	839
SfaNI	GCATC	7 cut(s)	203, 279, 390, 430, 513, 563, 934
SfcI	CTRYAG	2 cut(s)	818, 895
SfoI	GGCGCC	1 cut(s)	799
SinI	GGWCC	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	3 cut(s)	531, 755, 1012
SsiI	CCGC	7 cut(s)	8, 137, 174, 300, 362, 375, 920
SspDI	GGCGCC	1 cut(s)	797
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	4 cut(s)	210, 443, 567, 839
StyI	CCWWGG	1 cut(s)	322
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	4 cut(s)	12, 218, 334, 348
TasI	AATT	3 cut(s)	531, 755, 1012
TfiI	GAWTC	2 cut(s)	307, 823
Tru1I	TTAA	2 cut(s)	743, 1015
Tru9I	TTAA	2 cut(s)	743, 1015
TscAI	CASTG	6 cut(s)	120, 402, 424, 463, 595, 904
TseI	GCWGC	4 cut(s)	285, 639, 917, 931
TspDTI	ATGAA	4 cut(s)	573, 681, 792, 887
TspRI	CASTG	6 cut(s)	120, 402, 424, 463, 595, 904
VpaK11BI	GGWCC	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	861
XspI	CTAG	1 cut(s)	386
Zsp2I	ATGCAT	1 cut(s)	872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.