Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005326.1

Orthogroup ID

OG0002212

Physical Location & Seq

Genomic Coordinates Reverse (-)

7012 .. 9807

Gene Structure 2796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2643 bp

atggctaatgaagattctggtttgcttcgtcacgggttaaattcgcatggagtgaagcatagcatgaaagggatgctgagaatgaggtgggaaacgagaggtggtagaatagcaagtgatggtcattctgaagtggatgggagaaaggccaagtttctggcaaagggccagcaagctgccttgggaggtcagatgaatgatggagatagtgtagtcttggctttatcagcaatgccatgtcctggaaggagaaagcatagaaagatgaacatcggtatggaattatcttctcttcgaccaaagtatatgaactgtaatgtcagtgaggacaaggatgacagtttgtttgaagagtgtggagtttttgatggtgatgagctgactagtagatggggaaacaataaccagaaatcaattgaagctggtctcgaggatcctcatgatagattaggcatggcaaggataaagaagcggaaaacagtggcaatatcctgctttagtagagaaactgaggaagttcatcgccactatcatcatgttggaagccatcctgctgcaccacctctggtttttatggaaccaacattaaacaaaagggagaggtttaggggtatgaaacgcaagatgaacatcgccactatcagcccaagctctgaagaagtaagagctcactttcgcaaggaggaagcattgaggtattcagtctcggataggggattttgttacactgctctggatggtagaaagtctgcggtcgctcctctaacaaagatgaaaaagattgcccgatatcatgttatactcaaacctgataggccgcgccatatttacaccctgtgtctggtgcgggatgcagctgctagattgcctggaggtgtgggcaccagagcagatatttgtacactcatgcgcgactcacagtatctagtagaagacacctccgatgaacaacttaatcaagttgctagcaaaggactggacaggctgcactatgaagttgatccctgcgtcaagtatgatgggaagttgtgggtttatttacatcgaaatagaggggaggacgactttgaggacgatgctacatcatctgcctatgtaagaagaagattggggaagaaactatctcagtcttttttacacacaatttctgggcacttgaagctctcaccttctcgaaatctcacacaaatattacaaaaatccaagaaccagtccaacgctctgagagttcttgacctcatcaccccaaaaccaacctccactgcatctcgtcgccaaggccatcttcgcctcattcaggacgttctacactcagattccgatcaactcagcaacccttcttctctctctggttctcattcatcaatactgttctctaatttgtttgatcagctattcgattctagcccggttgattctcattcaaacccagaaagctttacaattgatgcgagtgttatttcacatgctataagctcttgtgggtctaagcgtgatcttcgtggtggggttcagcatcactgtgctgcagtacgaagtgggtttggggccaatgtttatataggaagctctttgataagtttgtacggtaaatgcagtgagttggagaatgcgtataaggtgttcgatgaaatgcctgtgagaaatgtggtgtcatggacagcaattatttcagggtttgcacaagagtggcaggttgatgtgtgcttggagcttttcagtgaaatgagaagctccggatcgaagccgaatgattttacgtatgcaagtgttctgagtgcttgcacaggcagtggagctctggggcaagggagatgtgctcatggccaaacgattcgaatgggtttcgattcgtatgttcacattgctaatgctttgatgtctatgtactgcaaatgtggcgctgttaaggatgcgctttacatatttgaaagtctggatggcaaagacaatgtgtcttggaactccatgattgcagggtatgcccagcacggccttgtgctgcaggccattgatctttttgaagaaatgaagaatcgaggcgtgaaacccgacaccattactttactcggggtgctctcttcgtgtcgccacgcgggtcttgtgaaagaaggctggcattacttcaattcgatggtcgaagaacatggcattcagcctgaactagatcattattcgtgcattgtggatctccttggtcgggcaggtttattggacgaggctcgagattttattgaaaagatgcctattcgtcccaacgccgttatttggggctcgcttctttcttcttgtagggttcatgggggcgtctggattggcattgaggctgcagagagcaggctgttgatggagccagggtgtgcttctacccatgtgcaattggcaaacctgtacgctagtttgggttgttgggatgaagcagcaagagtaagaaaactgatgaaagacaagggaatcaagacaagtcctgggttcagctggattgagatcagtaacgaagttcacagatttagagcagaagacagttcaaaccccagaatgattcaaataattggagtcttggatagtttggcagaccacatggtccgcctcaaaacttcaggttgtgagcttcaaatgcaagaggaagaggatgctccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

880

Amino Acids

97.88

Weight (kDa)

8.1

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_2nd_NFRKB	PF25793	222 - 354	3.5e-52	NFRKB second winged helix domain
PPR_2	PF13041	548 - 595	2.1e-12	PPR repeat family
PPR	PF01535	551 - 580	5e-06	PPR repeat
PPR_2	PF13041	650 - 694	8.6e-13	PPR repeat family
PPR	PF01535	652 - 682	9.9e-10	PPR repeat
E_motif	PF20431	773 - 829	9.5e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37320
fragaria_vesca	FvH4_6g14840 FvH4_6g14850 FvH4_6g14860 FvH4_6g14860 FvH4_6g14860
malus_domestica	MD12G1130300.v1.1
prunus_persica	Prupe.6G245300_v2.0.a1 Prupe.6G245400_v2.0.a1 Prupe.6G245400_v2.0.a1
pyrus_communis	pycom12g12640
rosa_chinensis	RchiOBHm_Chr3g0468071
rosa_laevigata	RLG00000024452 RLG00000024453 RLG00000024454
rosa_multiflora	Rmu_co8076902.1_g000001 Rmu_co8076904.1_g000001 Rmu_co8172106.1_g000001 Rmu_co8309729.1_g000001 Rmu_sc0005326.1_g000004 Rmu_sc0012651.1_g000004 Rmu_sc0012651.1_g000005
rosa_roxburghii	Rroxscaffold_6G00413080 Rroxscaffold_6G00413090 Rroxscaffold_6G00413100
rosa_rugosa	Rorug03G0092100 Rorug03G0092200 Rorug03G0092300
rosa_samantha	Rh3AG140600 Rh3AG140700 Rh3AG140800 Rh3BG161900 Rh3BG162000 Rh3BG162100 Rh3BG162200 Rh3CG161900 Rh3CG162000 Rh3DG162400 Rh3DG162500 Rh3DG162600
rosa_wichuraiana	Rw3G013280 Rw3G013290 Rw3G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2582
Acc36I	ACCTGC	2 cut(s)	1684, 2195
AccB1I	GGYRCC	1 cut(s)	881
AccB7I	CCANNNNNTGG	1 cut(s)	242
AccII	CGCG	3 cut(s)	820, 912, 2096
AccIII	TCCGGA	1 cut(s)	1736
AciI	CCGC	6 cut(s)	472, 752, 818, 847, 2096, 2587
AclWI	GGATC	5 cut(s)	428, 441, 995, 1747, 2196
AcoI	YGGCCR	1 cut(s)	1825
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	3 cut(s)	150, 675, 2583
AcyI	GRCGYC	1 cut(s)	2307
AdeI	CACNNNGTG	1 cut(s)	837
AfaI	GTAC	5 cut(s)	901, 1533, 1586, 1889, 2393
AfiI	CCNNNNNNNGG	5 cut(s)	242, 841, 1297, 2200, 2268
AhdI	GACNNNNNGTC	1 cut(s)	1954
AhlI	ACTAGT	1 cut(s)	383
AjnI	CCWGG	4 cut(s)	241, 868, 2353, 2467
AjuI	GAANNNNNNNTTGG	2 cut(s)	1269, 1301
AleI	CACNNNNGTG	1 cut(s)	1687
Alw21I	GWGCWC	4 cut(s)	670, 1801, 1822, 2079
Alw26I	GTCTC	2 cut(s)	431, 709
AlwI	GGATC	5 cut(s)	428, 441, 995, 1747, 2196
Ama87I	CYCGRG	3 cut(s)	428, 2069, 2223
Aor13HI	TCCGGA	1 cut(s)	1736
AoxI	GGCC	8 cut(s)	147, 166, 815, 1279, 1548, 1825, 1993, 2007
ApeKI	GCWGC	9 cut(s)	176, 554, 854, 857, 985, 1526, 2002, 2327, 2420
ApoI	RAATTY	1 cut(s)	40
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AspLEI	GCGC	4 cut(s)	822, 912, 1904, 1918
AspS9I	GGNCC	3 cut(s)	166, 1548, 2584
AsuC2I	CCSGG	1 cut(s)	1409
AsuHPI	GGTGA	3 cut(s)	383, 1158, 1234
AsuII	TTCGAA	1 cut(s)	1837
AsuNHI	GCTAGC	1 cut(s)	965
AvaI	CYCGRG	3 cut(s)	428, 2069, 2223
AvaII	GGWCC	1 cut(s)	2584
BaeGI	GKGCMC	2 cut(s)	884, 1155
BalI	TGGCCA	1 cut(s)	1827
BamHI	GGATCC	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	881
BanII	GRGCYC	3 cut(s)	670, 1801, 2276
BbsI	GAAGAC	2 cut(s)	939, 2526
Bbv12I	GWGCWC	4 cut(s)	670, 1801, 1822, 2079
BbvI	GCAGC	9 cut(s)	163, 541, 844, 866, 972, 1513, 1989, 2314, 2432
BceAI	ACGGC	2 cut(s)	2008, 2246
BciT130I	CCWGG	4 cut(s)	243, 870, 2355, 2469
BclI	TGATCA	1 cut(s)	1387
BcnI	CCSGG	1 cut(s)	1409
BcoDI	GTCTC	2 cut(s)	431, 709
BcuI	ACTAGT	1 cut(s)	383
BfaI	CTAG	7 cut(s)	384, 861, 926, 966, 1404, 2165, 2397
BfmI	CTRYAG	3 cut(s)	1527, 2003, 2328
BfoI	RGCGCY	1 cut(s)	1905
BfuAI	ACCTGC	2 cut(s)	1684, 2195
Bme1390I	CCNGG	5 cut(s)	243, 870, 1409, 2355, 2469
Bme18I	GGWCC	1 cut(s)	2584
BmeRI	GACNNNNNGTC	1 cut(s)	1954
BmeT110I	CYCGRG	3 cut(s)	428, 2069, 2223
BmgT120I	GGNCC	3 cut(s)	166, 1548, 2584
BmiI	GGNNCC	5 cut(s)	435, 579, 883, 1549, 2352
BmrFI	CCNGG	5 cut(s)	243, 870, 1409, 2355, 2469
BmsI	GCATC	9 cut(s)	63, 841, 1066, 1274, 1438, 1525, 1903, 2232, 2623
BmtI	GCTAGC	1 cut(s)	969
BpiI	GAAGAC	2 cut(s)	939, 2526
BplI	GAGNNNNNCTC	2 cut(s)	1804, 1836
BpmI	CTGGAG	1 cut(s)	891
Bpu14I	TTCGAA	1 cut(s)	1837
BpuMI	CCSGG	1 cut(s)	1409
BsaAI	YACGTR	1 cut(s)	1761
BsaBI	GATNNNNATC	4 cut(s)	269, 629, 1320, 2486
BsaHI	GRCGYC	1 cut(s)	2307
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	5 cut(s)	180, 1276, 2194, 2354, 2468
BsaWI	WCCGGW	1 cut(s)	1736
BsaXI	ACNNNNNCTCC	6 cut(s)	195, 225, 1598, 1628, 2342, 2372
Bsc4I	CCNNNNNNNGG	5 cut(s)	242, 841, 1297, 2200, 2268
Bse1I	ACTGG	2 cut(s)	981, 1210
Bse3DI	GCAATG	2 cut(s)	237, 1863
Bse8I	GATNNNNATC	4 cut(s)	269, 629, 1320, 2486
BseAI	TCCGGA	1 cut(s)	1736
BseBI	CCWGG	4 cut(s)	243, 870, 2355, 2469
BseDI	CCNNGG	5 cut(s)	180, 1276, 2194, 2354, 2468
BseJI	GATNNNNATC	4 cut(s)	269, 629, 1320, 2486
BseLI	CCNNNNNNNGG	5 cut(s)	242, 841, 1297, 2200, 2268
BseMI	GCAATG	2 cut(s)	237, 1863
BseMII	CTCAG	7 cut(s)	68, 501, 1139, 1214, 1326, 1342, 1766
BseNI	ACTGG	2 cut(s)	981, 1210
BseRI	GAGGAG	1 cut(s)	750
BseSI	GKGCMC	2 cut(s)	884, 1155
BseXI	GCAGC	9 cut(s)	163, 541, 844, 866, 972, 1513, 1989, 2314, 2432
BseYI	CCCAGC	1 cut(s)	1986
BsgI	GTGCAG	2 cut(s)	540, 971
Bsh1236I	CGCG	3 cut(s)	820, 912, 2096
Bsh1285I	CGRYCG	1 cut(s)	756
BshFI	GGCC	8 cut(s)	149, 168, 817, 1281, 1550, 1827, 1995, 2009
BshNI	GGYRCC	1 cut(s)	881
BsiEI	CGRYCG	1 cut(s)	756
BsiHKAI	GWGCWC	4 cut(s)	670, 1801, 1822, 2079
BsiHKCI	CYCGRG	3 cut(s)	428, 2069, 2223
BsiSI	CCGG	2 cut(s)	1409, 1737
BslFI	GGGAC	1 cut(s)	2238
BslI	CCNNNNNNNGG	5 cut(s)	242, 841, 1297, 2200, 2268
BsmAI	GTCTC	2 cut(s)	431, 709
BsmFI	GGGAC	1 cut(s)	2238
BsmI	GAATGC	2 cut(s)	1615, 2151
BsnI	GGCC	8 cut(s)	149, 168, 817, 1281, 1550, 1827, 1995, 2009
Bso31I	GGTCTC	1 cut(s)	431
BsoBI	CYCGRG	3 cut(s)	428, 2069, 2223
Bsp119I	TTCGAA	1 cut(s)	1837
Bsp1286I	GDGCHC	7 cut(s)	670, 884, 1155, 1801, 1822, 2079, 2276
Bsp13I	TCCGGA	1 cut(s)	1736
Bsp1407I	TGTACA	1 cut(s)	899
BspACI	CCGC	6 cut(s)	472, 752, 818, 847, 2096, 2587
BspANI	GGCC	8 cut(s)	149, 168, 817, 1281, 1550, 1827, 1995, 2009
BspCNI	CTCAG	7 cut(s)	69, 502, 1138, 1215, 1325, 1341, 1767
BspEI	TCCGGA	1 cut(s)	1736
BspFNI	CGCG	3 cut(s)	820, 912, 2096
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	5 cut(s)	435, 579, 883, 1549, 2352
BspMAI	CTGCAG	3 cut(s)	1531, 2007, 2332
BspMI	ACCTGC	2 cut(s)	1684, 2195
BspOI	GCTAGC	1 cut(s)	969
BspPI	GGATC	5 cut(s)	428, 441, 995, 1747, 2196
BspT104I	TTCGAA	1 cut(s)	1837
BspT107I	GGYRCC	1 cut(s)	881
BspTNI	GGTCTC	1 cut(s)	431
BsrDI	GCAATG	2 cut(s)	237, 1863
BsrGI	TGTACA	1 cut(s)	899
BsrI	ACTGG	2 cut(s)	981, 1210
BssECI	CCNNGG	5 cut(s)	180, 1276, 2194, 2354, 2468
BssNI	GRCGYC	1 cut(s)	2307
BssT1I	CCWWGG	3 cut(s)	180, 1276, 2194
Bst2UI	CCWGG	4 cut(s)	243, 870, 2355, 2469
Bst4CI	ACNGT	8 cut(s)	314, 341, 481, 921, 1371, 1523, 1589, 2525
Bst6I	CTCTTC	4 cut(s)	297, 345, 2086, 2622
BstACI	GRCGYC	1 cut(s)	2307
BstAPI	GCANNNNNTGC	1 cut(s)	1982
BstAUI	TGTACA	1 cut(s)	899
BstBAI	YACGTR	1 cut(s)	1761
BstBI	TTCGAA	1 cut(s)	1837
BstC8I	GCNNGC	8 cut(s)	170, 174, 967, 1783, 2007, 2117, 2276, 2339
BstDEI	CTNAG	8 cut(s)	77, 510, 1125, 1223, 1312, 1328, 1488, 1775
BstENI	CCTNNNNNAGG	1 cut(s)	1295
BstFNI	CGCG	3 cut(s)	820, 912, 2096
BstH2I	RGCGCY	1 cut(s)	1905
BstHHI	GCGC	4 cut(s)	822, 912, 1904, 1918
BstMAI	GTCTC	2 cut(s)	431, 709
BstMCI	CGRYCG	1 cut(s)	756
BstMWI	GCNNNNNNNGC	6 cut(s)	227, 1159, 1287, 1899, 1982, 2617
BstNI	CCWGG	4 cut(s)	243, 870, 2355, 2469
BstNSI	RCATGY	1 cut(s)	1469
BstSCI	CCNGG	5 cut(s)	241, 868, 1407, 2353, 2467
BstSFI	CTRYAG	3 cut(s)	1527, 2003, 2328
BstSLI	GKGCMC	2 cut(s)	884, 1155
BstSNI	TACGTA	1 cut(s)	1761
BstUI	CGCG	3 cut(s)	820, 912, 2096
BstV1I	GCAGC	9 cut(s)	163, 541, 844, 866, 972, 1513, 1989, 2314, 2432
BstV2I	GAAGAC	2 cut(s)	939, 2526
BstX2I	RGATCY	2 cut(s)	433, 2188
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	2 cut(s)	433, 2188
BsuRI	GGCC	8 cut(s)	149, 168, 817, 1281, 1550, 1827, 1995, 2009
BtgZI	GCGATG	2 cut(s)	506, 616
BtsI	GCAGTG	4 cut(s)	726, 1260, 1603, 1798
BtsIMutI	CAGTG	8 cut(s)	328, 486, 726, 1260, 1519, 1603, 1726, 1798
BveI	ACCTGC	2 cut(s)	1684, 2195
Cac8I	GCNNGC	8 cut(s)	170, 174, 967, 1783, 2007, 2117, 2276, 2339
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	4 cut(s)	822, 912, 1904, 1918
Cfr13I	GGNCC	3 cut(s)	166, 1548, 2584
CseI	GACGC	2 cut(s)	997, 2296
Csp6I	GTAC	5 cut(s)	900, 1532, 1585, 1888, 2392
CviQI	GTAC	5 cut(s)	900, 1532, 1585, 1888, 2392
DdeI	CTNAG	8 cut(s)	77, 510, 1125, 1223, 1312, 1328, 1488, 1775
DraIII	CACNNNGTG	1 cut(s)	837
DrdI	GACNNNNNNGTC	1 cut(s)	2582
DriI	GACNNNNNGTC	1 cut(s)	1954
DseDI	GACNNNNNNGTC	1 cut(s)	2582
EaeI	YGGCCR	1 cut(s)	1825
Eam1104I	CTCTTC	4 cut(s)	297, 345, 2086, 2622
Eam1105I	GACNNNNNGTC	1 cut(s)	1954
EarI	CTCTTC	4 cut(s)	297, 345, 2086, 2622
EciI	GGCGGA	1 cut(s)	2576
Ecl136II	GAGCTC	2 cut(s)	668, 1799
Eco105I	TACGTA	1 cut(s)	1761
Eco130I	CCWWGG	3 cut(s)	180, 1276, 2194
Eco24I	GRGCYC	3 cut(s)	670, 1801, 2276
Eco31I	GGTCTC	1 cut(s)	431
Eco32I	GATATC	1 cut(s)	791
Eco47I	GGWCC	1 cut(s)	2584
Eco53kI	GAGCTC	2 cut(s)	668, 1799
Eco57I	CTGAAG	3 cut(s)	150, 675, 2583
Eco88I	CYCGRG	3 cut(s)	428, 2069, 2223
EcoICRI	GAGCTC	2 cut(s)	668, 1799
EcoNI	CCTNNNNNAGG	1 cut(s)	1295
EcoRII	CCWGG	4 cut(s)	241, 868, 2353, 2467
EcoRV	GATATC	1 cut(s)	791
EcoT14I	CCWWGG	3 cut(s)	180, 1276, 2194
EcoT38I	GRGCYC	3 cut(s)	670, 1801, 2276
ErhI	CCWWGG	3 cut(s)	180, 1276, 2194
FalI	AAGNNNNNCTT	2 cut(s)	1269, 1301
FaqI	GGGAC	1 cut(s)	2238
FauI	CCCGC	2 cut(s)	840, 2089
FbaI	TGATCA	1 cut(s)	1387
FokI	GGATG	9 cut(s)	85, 149, 347, 534, 749, 863, 1925, 1952, 2426
FriOI	GRGCYC	3 cut(s)	670, 1801, 2276
FspBI	CTAG	7 cut(s)	384, 861, 926, 966, 1404, 2165, 2397
GlaI	GCGC	4 cut(s)	821, 911, 1903, 1917
GsaI	CCCAGC	1 cut(s)	1990
GsuI	CTGGAG	1 cut(s)	891
HaeII	RGCGCY	1 cut(s)	1905
HaeIII	GGCC	8 cut(s)	149, 168, 817, 1281, 1550, 1827, 1995, 2009
HapII	CCGG	2 cut(s)	1409, 1737
HgaI	GACGC	2 cut(s)	997, 2296
HhaI	GCGC	4 cut(s)	822, 912, 1904, 1918
Hin1I	GRCGYC	1 cut(s)	2307
Hin6I	GCGC	4 cut(s)	820, 910, 1902, 1916
HinP1I	GCGC	4 cut(s)	820, 910, 1902, 1916
HindIII	AAGCTT	1 cut(s)	1435
HpaII	CCGG	2 cut(s)	1409, 1737
HphI	GGTGA	3 cut(s)	383, 1158, 1234
Hpy166II	GTNNAC	3 cut(s)	902, 1861, 2503
Hpy188I	TCNGA	9 cut(s)	130, 192, 655, 709, 943, 1224, 1315, 1321, 1776
Hpy8I	GTNNAC	3 cut(s)	902, 1861, 2503
Hpy99I	CGWCG	1 cut(s)	1275
HpyAV	CCTTC	4 cut(s)	240, 1179, 1347, 2105
HpyCH4III	ACNGT	8 cut(s)	314, 341, 481, 921, 1371, 1523, 1589, 2525
HpyCH4IV	ACGT	2 cut(s)	1302, 1760
HpyF10VI	GCNNNNNNNGC	6 cut(s)	227, 1159, 1287, 1899, 1982, 2617
HpyF3I	CTNAG	8 cut(s)	77, 510, 1125, 1223, 1312, 1328, 1488, 1775
HpySE526I	ACGT	2 cut(s)	1302, 1760
Hsp92I	GRCGYC	1 cut(s)	2307
HspAI	GCGC	4 cut(s)	820, 910, 1902, 1916
Kpn2I	TCCGGA	1 cut(s)	1736
Ksp22I	TGATCA	1 cut(s)	1387
LmnI	GCTCC	6 cut(s)	763, 1711, 1739, 1796, 2350, 2641
Lsp1109I	GCAGC	9 cut(s)	163, 541, 844, 866, 972, 1513, 1989, 2314, 2432
LweI	GCATC	9 cut(s)	63, 841, 1066, 1274, 1438, 1525, 1903, 2232, 2623
MaeI	CTAG	7 cut(s)	384, 861, 926, 966, 1404, 2165, 2397
MaeII	ACGT	2 cut(s)	1302, 1760
MaeIII	GTNAC	3 cut(s)	29, 722, 2492
MfeI	CAATTG	3 cut(s)	414, 1443, 2378
MflI	RGATCY	2 cut(s)	433, 2188
MhlI	GDGCHC	7 cut(s)	670, 884, 1155, 1801, 1822, 2079, 2276
MlsI	TGGCCA	1 cut(s)	1827
MluNI	TGGCCA	1 cut(s)	1827
MlyI	GAGTC	2 cut(s)	908, 2565
MmeI	TCCRAC	3 cut(s)	520, 1239, 1584
Mox20I	TGGCCA	1 cut(s)	1827
MroI	TCCGGA	1 cut(s)	1736
MscI	TGGCCA	1 cut(s)	1827
MseI	TTAA	4 cut(s)	38, 587, 954, 1908
MslI	CAYNNNNRTG	3 cut(s)	275, 1521, 1687
Msp20I	TGGCCA	1 cut(s)	1827
MspA1I	CMGCKG	2 cut(s)	857, 2478
MspI	CCGG	2 cut(s)	1409, 1737
MspR9I	CCNGG	5 cut(s)	243, 870, 1409, 2355, 2469
MunI	CAATTG	3 cut(s)	414, 1443, 2378
Mva1269I	GAATGC	2 cut(s)	1615, 2151
MvaI	CCWGG	4 cut(s)	243, 870, 2355, 2469
MvnI	CGCG	3 cut(s)	820, 912, 2096
MwoI	GCNNNNNNNGC	6 cut(s)	227, 1159, 1287, 1899, 1982, 2617
NciI	CCSGG	1 cut(s)	1409
NheI	GCTAGC	1 cut(s)	965
NlaIV	GGNNCC	5 cut(s)	435, 579, 883, 1549, 2352
NmuCI	GTSAC	1 cut(s)	29
NspI	RCATGY	1 cut(s)	1469
NspV	TTCGAA	1 cut(s)	1837
OliI	CACNNNNGTG	1 cut(s)	1687
PaeR7I	CTCGAG	2 cut(s)	428, 2223
PagI	TCATGA	1 cut(s)	439
PctI	GAATGC	2 cut(s)	1615, 2151
PfeI	GAWTC	9 cut(s)	14, 1316, 1400, 1415, 1834, 1850, 2035, 2454, 2542
PflMI	CCANNNNNTGG	1 cut(s)	242
PfoI	TCCNGGA	1 cut(s)	241
PleI	GAGTC	2 cut(s)	908, 2564
PpsI	GAGTC	2 cut(s)	908, 2564
Ppu21I	YACGTR	1 cut(s)	1761
Psp124BI	GAGCTC	2 cut(s)	670, 1801
Psp6I	CCWGG	4 cut(s)	241, 868, 2353, 2467
PspFI	CCCAGC	1 cut(s)	1986
PspGI	CCWGG	4 cut(s)	241, 868, 2353, 2467
PspN4I	GGNNCC	5 cut(s)	435, 579, 883, 1549, 2352
PspPI	GGNCC	3 cut(s)	166, 1548, 2584
PsrI	GAACNNNNNNTAC	2 cut(s)	1607, 1639
PstI	CTGCAG	3 cut(s)	1531, 2007, 2332
PsuI	RGATCY	2 cut(s)	433, 2188
PvuII	CAGCTG	2 cut(s)	857, 2478
RsaI	GTAC	5 cut(s)	901, 1533, 1586, 1889, 2393
RsaNI	GTAC	5 cut(s)	900, 1532, 1585, 1888, 2392
RseI	CAYNNNNRTG	3 cut(s)	275, 1521, 1687
SacI	GAGCTC	2 cut(s)	670, 1801
SaqAI	TTAA	4 cut(s)	38, 587, 954, 1908
Sau96I	GGNCC	3 cut(s)	166, 1548, 2584
SchI	GAGTC	2 cut(s)	908, 2565
ScrFI	CCNGG	5 cut(s)	243, 870, 1409, 2355, 2469
SduI	GDGCHC	7 cut(s)	670, 884, 1155, 1801, 1822, 2079, 2276
SfaNI	GCATC	9 cut(s)	63, 841, 1066, 1274, 1438, 1525, 1903, 2232, 2623
SfcI	CTRYAG	3 cut(s)	1527, 2003, 2328
Sfr274I	CTCGAG	2 cut(s)	428, 2223
SfuI	TTCGAA	1 cut(s)	1837
SinI	GGWCC	1 cut(s)	2584
SlaI	CTCGAG	2 cut(s)	428, 2223
SmiMI	CAYNNNNRTG	3 cut(s)	275, 1521, 1687
SmlI	CTYRAG	2 cut(s)	428, 2223
SmoI	CTYRAG	2 cut(s)	428, 2223
SnaBI	TACGTA	1 cut(s)	1761
SpeI	ACTAGT	1 cut(s)	383
SsiI	CCGC	6 cut(s)	472, 752, 818, 847, 2096, 2587
SspI	AATATT	1 cut(s)	1191
SspMI	CTAG	7 cut(s)	384, 861, 926, 966, 1404, 2165, 2397
SstI	GAGCTC	2 cut(s)	670, 1801
StyD4I	CCNGG	5 cut(s)	241, 868, 1407, 2353, 2467
StyI	CCWWGG	3 cut(s)	180, 1276, 2194
TaaI	ACNGT	8 cut(s)	314, 341, 481, 921, 1371, 1523, 1589, 2525
TaiI	ACGT	2 cut(s)	1305, 1763
TatI	WGTACW	2 cut(s)	899, 1887
TauI	GCSGC	1 cut(s)	820
TfiI	GAWTC	9 cut(s)	14, 1316, 1400, 1415, 1834, 1850, 2035, 2454, 2542
Tru1I	TTAA	4 cut(s)	38, 587, 954, 1908
Tru9I	TTAA	4 cut(s)	38, 587, 954, 1908
TscAI	CASTG	8 cut(s)	328, 486, 733, 1267, 1526, 1603, 1726, 1798
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	9 cut(s)	176, 554, 854, 857, 985, 1526, 2002, 2327, 2420
Tsp45I	GTSAC	1 cut(s)	29
TspRI	CASTG	8 cut(s)	328, 486, 733, 1267, 1526, 1603, 1726, 1798
Van91I	CCANNNNNTGG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	2584
XagI	CCTNNNNNAGG	1 cut(s)	1295
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	1 cut(s)	1469
XhoI	CTCGAG	2 cut(s)	428, 2223
XspI	CTAG	7 cut(s)	384, 861, 926, 966, 1404, 2165, 2397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.