Rmu_sc0005446.1_g000013

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005446.1
OG0008886
Physical Location & Seq
Forward (+)
49782 .. 50280
499 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 426 bp
atgttcttcctccaccgcaacatggcgcgagccaaaacggcagtcaagattcacgaaatcgagcagagagcggcggcggatcaggaggcgagggtgggacggagctcgagaatgaactcgttggggaaaatagtgttccaaagcttagagcatagctcgagcagccaaactattggtgaggttggaatacggtgttttgatgacaatgttcatgatgcagatggtggtgttgatgttgagttgtgttgtgcagagctgctgggcgagagagtgaaggaagagattgacatgtctagaacctggaagaaaatagatgaagagattgaagccattgttatgcccgaggattaccggaataacaatgtttggatcctttgcaatgactgcaatgacacaactgaagtttacttccacattattggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

141

Amino Acids

16.06

Weight (kDa)

4.89

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zinc_ribbon_6 PF14599 95 - 141 2.7e-17 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 71
AccII CGCG 1 cut(s) 28
AciI CCGC 4 cut(s) 16, 71, 74, 77
AclWI GGATC 3 cut(s) 87, 364, 377
AcuI CTGAAG 1 cut(s) 420
AfiI CCNNNNNNNGG 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 1 cut(s) 326
AjnI CCWGG 1 cut(s) 299
AluBI AGCT 4 cut(s) 105, 144, 156, 256
AluI AGCT 4 cut(s) 105, 144, 156, 256
Alw21I GWGCWC 1 cut(s) 107
AlwI GGATC 3 cut(s) 87, 364, 377
Ama87I CYCGRG 3 cut(s) 106, 157, 341
ApeKI GCWGC 2 cut(s) 162, 256
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
AspLEI GCGC 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 188
AvaI CYCGRG 3 cut(s) 106, 157, 341
BamHI GGATCC 1 cut(s) 369
BanII GRGCYC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 2 cut(s) 174, 243
BccI CCATC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 301
BfaI CTAG 1 cut(s) 294
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 4 cut(s) 72, 75, 163, 257
BlsI GCNGC 4 cut(s) 73, 76, 164, 258
Bme1390I CCNGG 1 cut(s) 301
BmeT110I CYCGRG 3 cut(s) 106, 157, 341
BmiI GGNNCC 1 cut(s) 371
BmrFI CCNGG 1 cut(s) 301
BmsI GCATC 1 cut(s) 205
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BsaJI CCNNGG 1 cut(s) 342
BsaWI WCCGGW 1 cut(s) 351
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse3DI GCAATG 2 cut(s) 385, 394
BseBI CCWGG 1 cut(s) 301
BseDI CCNNGG 1 cut(s) 342
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 2 cut(s) 385, 394
BseXI GCAGC 2 cut(s) 174, 243
BseYI CCCAGC 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 107
BsiHKCI CYCGRG 3 cut(s) 106, 157, 341
BsiSI CCGG 1 cut(s) 352
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 111
BsoBI CYCGRG 3 cut(s) 106, 157, 341
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 2 cut(s) 79, 369
BspACI CCGC 4 cut(s) 16, 71, 74, 77
BspFNI CGCG 1 cut(s) 28
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 371
BspPI GGATC 3 cut(s) 87, 364, 377
BsrBI CCGCTC 1 cut(s) 71
BsrDI GCAATG 2 cut(s) 385, 394
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 2 cut(s) 79, 369
Bst2UI CCWGG 1 cut(s) 301
Bst4CI ACNGT 1 cut(s) 192
Bst6I CTCTTC 2 cut(s) 273, 312
BstAPI GCANNNNNTGC 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 145
BstFNI CGCG 1 cut(s) 28
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 82, 372
BstMBI GATC 2 cut(s) 79, 369
BstMWI GCNNNNNNNGC 3 cut(s) 38, 162, 384
BstNI CCWGG 1 cut(s) 301
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 299
BstUI CGCG 1 cut(s) 28
BstV1I GCAGC 2 cut(s) 174, 243
BstX2I RGATCY 1 cut(s) 369
BstXI CCANNNNNNTGG 2 cut(s) 173, 419
BstYI RGATCY 1 cut(s) 369
Cac8I GCNNGC 1 cut(s) 30
CciI TCATGA 1 cut(s) 211
CfoI GCGC 1 cut(s) 28
CviAII CATG 3 cut(s) 22, 212, 289
CviJI RGCY 7 cut(s) 32, 105, 144, 156, 165, 256, 329
CviKI_1 RGCY 7 cut(s) 32, 105, 144, 156, 165, 256, 329
DdeI CTNAG 1 cut(s) 145
DpnI GATC 2 cut(s) 81, 371
DpnII GATC 2 cut(s) 79, 369
Eam1104I CTCTTC 2 cut(s) 273, 312
EarI CTCTTC 2 cut(s) 273, 312
EciI GGCGGA 1 cut(s) 92
Ecl136II GAGCTC 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 107
Eco53kI GAGCTC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 420
Eco88I CYCGRG 3 cut(s) 106, 157, 341
EcoICRI GAGCTC 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 299
EcoT38I GRGCYC 1 cut(s) 107
FaeI CATG 3 cut(s) 25, 215, 292
FaiI YATR 5 cut(s) 23, 153, 213, 290, 338
FaqI GGGAC 1 cut(s) 111
FatI CATG 3 cut(s) 21, 211, 288
Fnu4HI GCNGC 4 cut(s) 72, 75, 163, 257
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 4 cut(s) 72, 75, 163, 257
FspBI CTAG 1 cut(s) 294
GlaI GCGC 1 cut(s) 27
GluI GCNGC 4 cut(s) 72, 75, 163, 257
GsaI CCCAGC 1 cut(s) 263
HapII CCGG 1 cut(s) 352
HhaI GCGC 1 cut(s) 28
Hin1II CATG 3 cut(s) 25, 215, 292
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HindIII AAGCTT 1 cut(s) 142
HinfI GANTC 1 cut(s) 49
HpaII CCGG 1 cut(s) 352
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 406
Hpy188III TCNNGA 6 cut(s) 46, 53, 83, 108, 212, 294
Hpy8I GTNNAC 1 cut(s) 406
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4V TGCA 4 cut(s) 218, 251, 378, 387
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 162, 384
HpyF3I CTNAG 1 cut(s) 145
Hsp92II CATG 3 cut(s) 25, 215, 292
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 2 cut(s) 79, 369
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 5 cut(s) 68, 245, 286, 313, 365
Lsp1109I GCAGC 2 cut(s) 174, 243
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 294
MalI GATC 2 cut(s) 81, 371
MbiI CCGCTC 1 cut(s) 71
MboI GATC 2 cut(s) 79, 369
MboII GAAGA 3 cut(s) 290, 316, 329
MflI RGATCY 1 cut(s) 369
MhlI GDGCHC 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 5 cut(s) 20, 79, 84, 172, 337
MslI CAYNNNNRTG 1 cut(s) 335
MspI CCGG 1 cut(s) 352
MspR9I CCNGG 1 cut(s) 301
MvaI CCWGG 1 cut(s) 301
MvnI CGCG 1 cut(s) 28
MwoI GCNNNNNNNGC 3 cut(s) 38, 162, 384
NdeII GATC 2 cut(s) 79, 369
NlaIII CATG 3 cut(s) 25, 215, 292
NlaIV GGNNCC 1 cut(s) 371
NspI RCATGY 1 cut(s) 292
PaeR7I CTCGAG 2 cut(s) 106, 157
PagI TCATGA 1 cut(s) 211
PciI ACATGT 1 cut(s) 288
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 4 cut(s) 73, 76, 164, 258
PscI ACATGT 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 299
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 371
PspXI VCTCGAGB 1 cut(s) 157
PsuI RGATCY 1 cut(s) 369
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 1 cut(s) 107
SatI GCNGC 4 cut(s) 72, 75, 163, 257
Sau3AI GATC 2 cut(s) 79, 369
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 1 cut(s) 107
SetI ASST 6 cut(s) 107, 146, 158, 183, 258, 302
SfaNI GCATC 1 cut(s) 205
Sfr274I CTCGAG 2 cut(s) 106, 157
SlaI CTCGAG 2 cut(s) 106, 157
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 2 cut(s) 106, 157
SmoI CTYRAG 2 cut(s) 106, 157
SsiI CCGC 4 cut(s) 16, 71, 74, 77
SspMI CTAG 1 cut(s) 294
SstI GAGCTC 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 192
TaqI TCGA 3 cut(s) 60, 107, 158
TauI GCSGC 2 cut(s) 74, 77
TfiI GAWTC 1 cut(s) 49
TseI GCWGC 2 cut(s) 162, 256
TspDTI ATGAA 3 cut(s) 128, 200, 330
TspGWI ACGGA 1 cut(s) 115
XbaI TCTAGA 1 cut(s) 293
XceI RCATGY 1 cut(s) 292
XhoI CTCGAG 2 cut(s) 106, 157
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.