Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005657.1

Orthogroup ID

OG0003492

Physical Location & Seq

Genomic Coordinates Reverse (-)

57302 .. 58160

Gene Structure 859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgcttcacctggttttgaggctgtggggaggaactatgattaaggtgaagactcttaccgggaaagaaattgagattgatattgaaccgactgacaccattaaccgaatcaaggaaagtgttgaggtgaaagagggaattcctccggtgcaacaaagagtgacagaaaggggactgatggttctggcttttgccgcacagagaaaactacttctgtcttttaattcgaggcagaggaaagtgtttagagcggtagggttgaataattatgggtcttgggtattggagattgatgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010817 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043412 GO:0043449 GO:0043450 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0050896 GO:0051603 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

99

Amino Acids

11.32

Weight (kDa)

9.52

Isoelectric Point (pI)

30.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	14 - 54	1.4e-10	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31340 AT2G35635
fragaria_vesca	FvH4_3g15350 FvH4_6g21361
malus_domestica	MD10G1205300.v1.1 MD12G1050500.v1.1 MD14G1049000.v1.1
prunus_persica	Prupe.4G136400_v2.0.a1 Prupe.7G086300_v2.0.a1
pyrus_communis	pycom10g17580 pycom12g04500 pycom14g04010
rosa_chinensis	RchiOBHm_Chr0c32g0501481 RchiOBHm_Chr3g0477981 RchiOBHm_Chr3g0478131 RchiOBHm_Chr3g0478171 RchiOBHm_Chr3g0478321 RchiOBHm_Chr3g0478371 RchiOBHm_Chr3g0483791 RchiOBHm_Chr4g0426431
rosa_laevigata	RLG00000032875
rosa_multiflora	Rmu_sc0001218.1_g000001 Rmu_sc0001333.1_g000004 Rmu_sc0005657.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403390
rosa_rugosa	Rorug03G0165100 Rorug05G0088500
rosa_samantha	Rh3AG215400 Rh3AG215900
rosa_wichuraiana	Rw0G010130 Rw3G019400 Rw3G019430 Rw3G019480 Rw4G023230 Rw5G016380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	251
AciI	CCGC	2 cut(s)	195, 251
AcsI	RAATTY	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	2 cut(s)	86, 262
AjnI	CCWGG	1 cut(s)	9
AloI	GAACNNNNNNTCC	2 cut(s)	165, 197
ApoI	RAATTY	1 cut(s)	138
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	58, 139
BbsI	GAAGAC	1 cut(s)	56
BccI	CCATC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	11
BcnI	CCSGG	1 cut(s)	61
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	2 cut(s)	11, 61
BmrFI	CCNGG	2 cut(s)	11, 61
BpiI	GAAGAC	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	61
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	60, 146
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	186
BspACI	CCGC	2 cut(s)	195, 251
BsrBI	CCGCTC	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	2 cut(s)	9, 59
BstV2I	GAAGAC	1 cut(s)	56
CsiI	ACCWGGT	1 cut(s)	9
CviJI	RGCY	2 cut(s)	22, 188
CviKI_1	RGCY	2 cut(s)	22, 188
EcoRI	GAATTC	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	9
FaiI	YATR	2 cut(s)	38, 270
FaqI	GGGAC	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
HapII	CCGG	2 cut(s)	60, 146
HinfI	GANTC	2 cut(s)	52, 108
HpaII	CCGG	2 cut(s)	60, 146
HphI	GGTGA	2 cut(s)	58, 139
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
LpnPI	CCDG	4 cut(s)	23, 73, 159, 170
MabI	ACCWGGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	160
MbiI	CCGCTC	1 cut(s)	251
MboII	GAAGA	1 cut(s)	61
MluCI	AATT	4 cut(s)	69, 138, 223, 265
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	7 cut(s)	12, 23, 118, 127, 153, 222, 228
MseI	TTAA	3 cut(s)	42, 102, 222
MspI	CCGG	2 cut(s)	60, 146
MspR9I	CCNGG	2 cut(s)	11, 61
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	42, 102, 222
SatI	GCNGC	1 cut(s)	195
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	11, 61
SetI	ASST	3 cut(s)	12, 48, 129
SexAI	ACCWGGT	1 cut(s)	9
SgeI	CNNG	9 cut(s)	22, 23, 72, 73, 124, 158, 197, 240, 288
Sse9I	AATT	4 cut(s)	69, 138, 223, 265
SsiI	CCGC	2 cut(s)	195, 251
StyD4I	CCNGG	2 cut(s)	9, 59
TaqI	TCGA	1 cut(s)	227
TasI	AATT	4 cut(s)	69, 138, 223, 265
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	3 cut(s)	42, 102, 222
Tru9I	TTAA	3 cut(s)	42, 102, 222
TseFI	GTSAC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.