Rmu_sc0006537.1_g000040

UPF0496 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006537.1
OG0002238
Physical Location & Seq
Reverse (-)
159122 .. 160006
885 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 885 bp
atgaaccaggaagtggtcagtgtcattctcgaatgcaagaaggatgtatggaacaatcaagagatgttctctctagtggaggagtactttgagaacagtctccagacattggacttctgtactgccctcgagagatgtctcaagcgtgcagtgaacaatcagctgataattcaggctgcggtgaggcagtttgaggaagaagtagaagctggtttcgaagggaaggggtgtgtgaggacattgcaggagttgagggcatttaaggcagccagggaccctttcacggaggagttctttgtactatttcaggcagtttataaccaacaggcatcgatgctccagaaattgcaagtccgaaagagaaagcttgataagaagttgaaatcagtgaaagcctggcggaaagtgtcaaatgttatttttgttgccacttttgtgtctgtattgatattttcggtggtggcagctgccattgctgcaccgccacttgtaaccgccttggctggtgcactggctgttccgataggttctgttggaaaatggtgtaatatgctttggagccgctatgagagggctctgaaagggcagagggagataataagctcaatgcaggttggaagtatgattacaatgacagacttgaacaacatcagggtgcttgttgagaaatttgaaatcgagattgaggcactgcttcagaatgctgactttgctattagagaagaggatgctgtgaagatcgtgatgattgagatcaacaaaaagctggaaaagtttatggaaaccatcgaaagtttaagccaaaacgctgataagtgtggccggaatataaggaaggcaaggacagtgattttgcagagaataattaggcatcccatcaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

294

Amino Acids

33.6

Weight (kDa)

9.07

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 1 - 288 9.6e-112 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
Acc36I ACCTGC 1 cut(s) 601
AccB7I CCANNNNNTGG 2 cut(s) 13, 109
AciI CCGC 5 cut(s) 179, 400, 482, 495, 562
AcoI YGGCCR 1 cut(s) 820
AcsI RAATTY 1 cut(s) 668
AcuI CTGAAG 1 cut(s) 680
AfaI GTAC 3 cut(s) 86, 121, 300
AfiI CCNNNNNNNGG 3 cut(s) 13, 109, 283
AgsI TTSAA 3 cut(s) 382, 643, 674
AjnI CCWGG 3 cut(s) 6, 269, 395
AleI CACNNNNGTG 1 cut(s) 434
AluBI AGCT 6 cut(s) 163, 209, 367, 467, 603, 766
AluI AGCT 6 cut(s) 163, 209, 367, 467, 603, 766
Alw21I GWGCWC 1 cut(s) 511
Alw26I GTCTC 2 cut(s) 104, 143
Alw44I GTGCAC 1 cut(s) 507
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 1 cut(s) 820
ApaLI GTGCAC 1 cut(s) 507
ApeKI GCWGC 5 cut(s) 176, 266, 464, 467, 476
ApoI RAATTY 1 cut(s) 668
ArsI GACNNNNNNTTYG 2 cut(s) 835, 867
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 193
AsuII TTCGAA 1 cut(s) 216
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 511
BanII GRGCYC 1 cut(s) 577
BarI GAAGNNNNNNTAC 2 cut(s) 610, 642
Bbv12I GWGCWC 1 cut(s) 511
BbvI GCAGC 5 cut(s) 163, 278, 454, 463, 476
BccI CCATC 2 cut(s) 794, 884
BciT130I CCWGG 3 cut(s) 8, 271, 397
BcoDI GTCTC 2 cut(s) 104, 143
BfaI CTAG 1 cut(s) 74
BfuAI ACCTGC 1 cut(s) 601
BisI GCNGC 6 cut(s) 177, 267, 465, 468, 477, 562
BlsI GCNGC 6 cut(s) 178, 268, 466, 469, 478, 563
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 3 cut(s) 8, 271, 397
Bme18I GGWCC 1 cut(s) 274
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 3 cut(s) 275, 276, 560
BmrFI CCNGG 3 cut(s) 8, 271, 397
BmsI GCATC 4 cut(s) 324, 338, 718, 880
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BpmI CTGGAG 2 cut(s) 86, 323
Bpu14I TTCGAA 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 125
Bsa29I ATCGAT 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 752
BsaJI CCNNGG 2 cut(s) 270, 498
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 109, 283
Bse1I ACTGG 1 cut(s) 516
Bse3DI GCAATG 2 cut(s) 239, 471
Bse8I GATNNNNATC 1 cut(s) 752
BseBI CCWGG 3 cut(s) 8, 271, 397
BseCI ATCGAT 1 cut(s) 332
BseDI CCNNGG 2 cut(s) 270, 498
BseGI GGATG 3 cut(s) 49, 733, 871
BseJI GATNNNNATC 1 cut(s) 752
BseLI CCNNNNNNNGG 3 cut(s) 13, 109, 283
BseMI GCAATG 2 cut(s) 239, 471
BseNI ACTGG 1 cut(s) 516
BseRI GAGGAG 2 cut(s) 95, 302
BseSI GKGCMC 1 cut(s) 511
BseXI GCAGC 5 cut(s) 163, 278, 454, 463, 476
BsgI GTGCAG 2 cut(s) 168, 462
BshFI GGCC 1 cut(s) 822
BshVI ATCGAT 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 511
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 1 cut(s) 823
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 3 cut(s) 13, 109, 283
BsmAI GTCTC 2 cut(s) 104, 143
BsmFI GGGAC 1 cut(s) 287
BsmI GAATGC 2 cut(s) 38, 706
BsnI GGCC 1 cut(s) 822
BsoBI CYCGRG 1 cut(s) 128
Bsp119I TTCGAA 1 cut(s) 216
Bsp1286I GDGCHC 2 cut(s) 511, 577
Bsp143I GATC 2 cut(s) 738, 753
BspACI CCGC 5 cut(s) 179, 400, 482, 495, 562
BspANI GGCC 1 cut(s) 822
BspDI ATCGAT 1 cut(s) 332
BspLI GGNNCC 3 cut(s) 275, 276, 560
BspMI ACCTGC 1 cut(s) 601
BspT104I TTCGAA 1 cut(s) 216
BsrDI GCAATG 2 cut(s) 239, 471
BsrI ACTGG 1 cut(s) 516
BssECI CCNNGG 2 cut(s) 270, 498
BssMI GATC 2 cut(s) 738, 753
BssT1I CCWWGG 1 cut(s) 498
Bst2UI CCWGG 3 cut(s) 8, 271, 397
Bst4CI ACNGT 2 cut(s) 98, 847
Bst6I CTCTTC 1 cut(s) 717
BstBI TTCGAA 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 147
BstF5I GGATG 3 cut(s) 49, 733, 871
BstKTI GATC 2 cut(s) 741, 756
BstMAI GTCTC 2 cut(s) 104, 143
BstMBI GATC 2 cut(s) 738, 753
BstMWI GCNNNNNNNGC 4 cut(s) 263, 473, 476, 710
BstNI CCWGG 3 cut(s) 8, 271, 397
BstSCI CCNGG 3 cut(s) 6, 269, 395
BstSLI GKGCMC 1 cut(s) 511
BstV1I GCAGC 5 cut(s) 163, 278, 454, 463, 476
Bsu15I ATCGAT 1 cut(s) 332
BsuRI GGCC 1 cut(s) 822
BsuTUI ATCGAT 1 cut(s) 332
BtsCI GGATG 3 cut(s) 49, 733, 871
BtsI GCAGTG 2 cut(s) 156, 689
BtsIMutI CAGTG 6 cut(s) 25, 156, 393, 509, 689, 852
BveI ACCTGC 1 cut(s) 601
Cac8I GCNNGC 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 274
ClaI ATCGAT 1 cut(s) 332
Csp6I GTAC 3 cut(s) 85, 120, 299
CviQI GTAC 3 cut(s) 85, 120, 299
DpnI GATC 2 cut(s) 740, 755
DpnII GATC 2 cut(s) 738, 753
EaeI YGGCCR 1 cut(s) 820
Eam1104I CTCTTC 1 cut(s) 717
EarI CTCTTC 1 cut(s) 717
EciI GGCGGA 1 cut(s) 415
Eco130I CCWWGG 1 cut(s) 498
Eco24I GRGCYC 1 cut(s) 577
Eco47I GGWCC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 680
Eco88I CYCGRG 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 274
EcoRII CCWGG 3 cut(s) 6, 269, 395
EcoT14I CCWWGG 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 577
ErhI CCWWGG 1 cut(s) 498
FaiI YATR 7 cut(s) 49, 318, 551, 567, 623, 779, 830
FaqI GGGAC 1 cut(s) 287
Fnu4HI GCNGC 6 cut(s) 177, 267, 465, 468, 477, 562
FokI GGATG 3 cut(s) 56, 740, 858
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 6 cut(s) 177, 267, 465, 468, 477, 562
FspBI CTAG 1 cut(s) 74
GluI GCNGC 6 cut(s) 177, 267, 465, 468, 477, 562
GsuI CTGGAG 2 cut(s) 86, 323
HaeIII GGCC 1 cut(s) 822
HapII CCGG 1 cut(s) 823
HindIII AAGCTT 1 cut(s) 365
HpaII CCGG 1 cut(s) 823
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 2 cut(s) 154, 509
Hpy188I TCNGA 4 cut(s) 356, 522, 579, 699
Hpy188III TCNNGA 7 cut(s) 29, 59, 103, 130, 340, 679, 742
Hpy8I GTNNAC 2 cut(s) 154, 509
HpyAV CCTTC 4 cut(s) 34, 212, 217, 829
HpyCH4III ACNGT 2 cut(s) 98, 847
HpyCH4V TGCA 8 cut(s) 36, 149, 244, 349, 479, 509, 610, 856
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 473, 476, 710
KflI GGGWCCC 1 cut(s) 274
Kzo9I GATC 2 cut(s) 738, 753
LmnI GCTCC 2 cut(s) 342, 558
Lsp1109I GCAGC 5 cut(s) 163, 278, 454, 463, 476
LweI GCATC 4 cut(s) 324, 338, 718, 880
MaeI CTAG 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 490
MalI GATC 2 cut(s) 740, 755
MboI GATC 2 cut(s) 738, 753
MboII GAAGA 3 cut(s) 209, 734, 748
MhlI GDGCHC 2 cut(s) 511, 577
MluCI AATT 4 cut(s) 168, 344, 668, 864
MmeI TCCRAC 2 cut(s) 514, 595
MseI TTAA 2 cut(s) 261, 797
MslI CAYNNNNRTG 2 cut(s) 434, 653
MspA1I CMGCKG 2 cut(s) 163, 467
MspI CCGG 1 cut(s) 823
MspR9I CCNGG 3 cut(s) 8, 271, 397
Mva1269I GAATGC 2 cut(s) 38, 706
MvaI CCWGG 3 cut(s) 8, 271, 397
MwoI GCNNNNNNNGC 4 cut(s) 263, 473, 476, 710
NdeII GATC 2 cut(s) 738, 753
NlaIV GGNNCC 3 cut(s) 275, 276, 560
NspV TTCGAA 1 cut(s) 216
OliI CACNNNNGTG 1 cut(s) 434
PaeR7I CTCGAG 1 cut(s) 128
PctI GAATGC 2 cut(s) 38, 706
PflMI CCANNNNNTGG 2 cut(s) 13, 109
PkrI GCNGC 6 cut(s) 178, 268, 466, 469, 478, 563
PpuMI RGGWCCY 1 cut(s) 274
PsiI TTATAA 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 274
Psp6I CCWGG 3 cut(s) 6, 269, 395
PspGI CCWGG 3 cut(s) 6, 269, 395
PspN4I GGNNCC 3 cut(s) 275, 276, 560
PspPI GGNCC 1 cut(s) 274
PspPPI RGGWCCY 1 cut(s) 274
PvuII CAGCTG 2 cut(s) 163, 467
RsaI GTAC 3 cut(s) 86, 121, 300
RsaNI GTAC 3 cut(s) 85, 120, 299
RseI CAYNNNNRTG 2 cut(s) 434, 653
SaqAI TTAA 2 cut(s) 261, 797
SatI GCNGC 6 cut(s) 177, 267, 465, 468, 477, 562
Sau3AI GATC 2 cut(s) 738, 753
Sau96I GGNCC 1 cut(s) 274
ScaI AGTACT 1 cut(s) 86
ScrFI CCNGG 3 cut(s) 8, 271, 397
SduI GDGCHC 2 cut(s) 511, 577
SetI ASST 8 cut(s) 165, 211, 369, 469, 529, 605, 615, 768
SfaNI GCATC 4 cut(s) 324, 338, 718, 880
Sfr274I CTCGAG 1 cut(s) 128
SfuI TTCGAA 1 cut(s) 216
SinI GGWCC 1 cut(s) 274
SlaI CTCGAG 1 cut(s) 128
SmiMI CAYNNNNRTG 2 cut(s) 434, 653
SmlI CTYRAG 2 cut(s) 128, 140
SmoI CTYRAG 2 cut(s) 128, 140
Sse9I AATT 4 cut(s) 168, 344, 668, 864
SsiI CCGC 5 cut(s) 179, 400, 482, 495, 562
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 3 cut(s) 6, 269, 395
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 2 cut(s) 98, 847
TaqI TCGA 6 cut(s) 30, 129, 216, 332, 678, 789
TasI AATT 4 cut(s) 168, 344, 668, 864
TatI WGTACW 3 cut(s) 84, 119, 298
TauI GCSGC 1 cut(s) 564
Tru1I TTAA 2 cut(s) 261, 797
Tru9I TTAA 2 cut(s) 261, 797
TscAI CASTG 6 cut(s) 25, 156, 393, 516, 696, 852
TseI GCWGC 5 cut(s) 176, 266, 464, 467, 476
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 6 cut(s) 25, 156, 393, 516, 696, 852
Van91I CCANNNNNTGG 2 cut(s) 13, 109
VneI GTGCAC 1 cut(s) 507
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 1 cut(s) 668
XhoI CTCGAG 1 cut(s) 128
XspI CTAG 1 cut(s) 74
ZrmI AGTACT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.