Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007311.1

Orthogroup ID

OG0006660

Physical Location & Seq

Genomic Coordinates Forward (+)

14421 .. 16863

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atggccttggagttcgagcagcagcatcatcagcagcagttgagtctcaccaccaaccccgttgacggcgacactaacggcgtcgacgctgcggcggggcgagcctcagccgaggccggggatgactccagcaaggcgccgaggctgccgcggtggacccggcaggagattctggtgctgataaagggcaagagggcggcggagagccggggcggcggcgggaggacggccaggtcggagttcgggtcgggtcaggtggagccgaaatgggccgccgtgtcgtcgtactgcaagaagcacggggtgaaccgcgggccggtccagtgccggaagaggtggagcaatttggccggcgactttaagaagatcagggagtgggaggcgcagaggaaggacgaaacggagtcgttttgggtgatgaggaacgatttgaggagagagagaaagctgccggggttttttgataaagaggtttatgatataatggaggccgtttccggcgccgccgccgccgctccggttacgctggctctggccccgccgccgctgatggtatcggaggccgagaacaacctgaaggagggtctgaccgacgaggtggagaagctttttgacagcagacaggggcccactgacgacgggttgttttcggactacgagcaagaggagtcgggtcggagccccgataaggaagtccggctcaaaagccccaccgcgattccagctcctttgccaatatcagagaagctgttcaaaccaatacaagcgtcccaaggacaaggtgcagcaggccaaaaacagccaccttcaattcctgagatgggttctacttctcaagaccgaaaaaggaagcgctttgcagtagatggagaggaggaaacattcagtttgcagaatcagttgattgaggtcatggaaaggaatggtaaaatgctggctgactattttgtggctcagaattctcattcgcaactggatagggagcagaggaaagaacattctgatagcttaattgctgttcttaacaagcttgcagatgctttcatgagaatcgccgataagttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071216 GO:0071219 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

355

Amino Acids

39.45

Weight (kDa)

6.09

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	51 - 141	3.2e-10	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33550
fragaria_vesca	FvH4_4g22720 FvH4_4g22720
malus_domestica	MD13G1130000.v1.1 MD16G1130200.v1.1
prunus_persica	Prupe.1G216100_v2.0.a1
pyrus_communis	pycom13g11310 pycom16g11090
rosa_chinensis	RchiOBHm_Chr2g0112661 RchiOBHm_Chr4g0428941
rosa_laevigata	RLG00000007112
rosa_multiflora	Rmu_sc0000816.1_g000016 Rmu_sc0001700.1_g000023 Rmu_sc0007311.1_g000003
rosa_roxburghii	Rroxscaffold_3G00266460 Rroxscaffold_4G00298040 Rroxscaffold_5G00370610
rosa_rugosa	Rorug04G0230900 Rorug04G0230900
rosa_samantha	Rh1DG133600 Rh3CG251300 Rh4BG293200 Rh4CG309100 Rh4DG290300 Rh6CG208200
rosa_wichuraiana	Rw4G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	232
AccB1I	GGYRCC	2 cut(s)	136, 500
AccBSI	CCGCTC	1 cut(s)	515
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	3 cut(s)	151, 312, 716
AcoI	YGGCCR	2 cut(s)	228, 348
AcsI	RAATTY	1 cut(s)	958
AcuI	CTGAAG	1 cut(s)	596
AcyI	GRCGYC	3 cut(s)	81, 137, 501
AdeI	CACNNNGTG	1 cut(s)	304
AfaI	GTAC	1 cut(s)	287
AfeI	AGCGCT	1 cut(s)	854
AfiI	CCNNNNNNNGG	6 cut(s)	65, 117, 316, 580, 688, 821
AgsI	TTSAA	2 cut(s)	754, 810
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	6 cut(s)	448, 607, 725, 748, 1008, 1030
AluI	AGCT	6 cut(s)	448, 607, 725, 748, 1008, 1030
Alw26I	GTCTC	1 cut(s)	50
Aor51HI	AGCGCT	1 cut(s)	854
ApaI	GGGCCC	1 cut(s)	630
ApeKI	GCWGC	7 cut(s)	19, 22, 34, 89, 145, 448, 785
ApoI	RAATTY	1 cut(s)	958
Asp700I	GAANNNNTTC	1 cut(s)	749
AspLEI	GCGC	4 cut(s)	139, 385, 503, 855
AspS9I	GGNCC	7 cut(s)	156, 270, 314, 319, 535, 626, 627
AsuC2I	CCSGG	4 cut(s)	118, 160, 209, 453
AsuHPI	GGTGA	3 cut(s)	40, 316, 427
AvaII	GGWCC	2 cut(s)	156, 319
BaeGI	GKGCMC	1 cut(s)	630
BanI	GGYRCC	2 cut(s)	136, 500
BanII	GRGCYC	2 cut(s)	630, 683
BbvCI	CCTCAGC	1 cut(s)	106
BbvI	GCAGC	7 cut(s)	31, 34, 46, 76, 132, 435, 797
BccI	CCATC	3 cut(s)	544, 814, 860
BceAI	ACGGC	5 cut(s)	82, 94, 243, 260, 476
BciT130I	CCWGG	1 cut(s)	232
BcnI	CCSGG	4 cut(s)	118, 160, 209, 453
BcoDI	GTCTC	1 cut(s)	50
BfoI	RGCGCY	3 cut(s)	140, 504, 856
BglI	GCCNNNNNGGC	1 cut(s)	213
Bme1390I	CCNGG	5 cut(s)	118, 160, 209, 232, 453
Bme18I	GGWCC	2 cut(s)	156, 319
BmgT120I	GGNCC	7 cut(s)	156, 270, 314, 319, 535, 626, 627
BmiI	GGNNCC	8 cut(s)	138, 158, 261, 502, 537, 627, 628, 680
BmrFI	CCNGG	5 cut(s)	118, 160, 209, 232, 453
BmsI	GCATC	2 cut(s)	34, 1027
BpmI	CTGGAG	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	819
BpuMI	CCSGG	4 cut(s)	118, 160, 209, 453
BsaHI	GRCGYC	3 cut(s)	81, 137, 501
BsaJI	CCNNGG	9 cut(s)	6, 111, 117, 140, 149, 208, 310, 452, 772
BsaWI	WCCGGW	1 cut(s)	517
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	6 cut(s)	65, 117, 316, 580, 688, 821
Bse118I	RCCGGY	2 cut(s)	316, 350
Bse1I	ACTGG	2 cut(s)	322, 978
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	9 cut(s)	6, 111, 117, 140, 149, 208, 310, 452, 772
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	6 cut(s)	65, 117, 316, 580, 688, 821
BseMII	CTCAG	3 cut(s)	120, 807, 968
BseNI	ACTGG	2 cut(s)	322, 978
BseRI	GAGGAG	3 cut(s)	448, 680, 887
BseSI	GKGCMC	1 cut(s)	630
BseXI	GCAGC	7 cut(s)	31, 34, 46, 76, 132, 435, 797
BsgI	GTGCAG	1 cut(s)	804
Bsh1236I	CGCG	3 cut(s)	151, 312, 716
BshNI	GGYRCC	2 cut(s)	136, 500
BslFI	GGGAC	1 cut(s)	754
BslI	CCNNNNNNNGG	6 cut(s)	65, 117, 316, 580, 688, 821
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	754
Bsp120I	GGGCCC	1 cut(s)	626
Bsp1286I	GDGCHC	2 cut(s)	630, 683
Bsp143I	GATC	1 cut(s)	366
BspCNI	CTCAG	3 cut(s)	119, 808, 967
BspFNI	CGCG	3 cut(s)	151, 312, 716
BspHI	TCATGA	1 cut(s)	1044
BspLI	GGNNCC	8 cut(s)	138, 158, 261, 502, 537, 627, 628, 680
BspT107I	GGYRCC	2 cut(s)	136, 500
BsrBI	CCGCTC	1 cut(s)	515
BsrFI	RCCGGY	2 cut(s)	316, 350
BsrI	ACTGG	2 cut(s)	322, 978
BssAI	RCCGGY	2 cut(s)	316, 350
BssECI	CCNNGG	9 cut(s)	6, 111, 117, 140, 149, 208, 310, 452, 772
BssMI	GATC	1 cut(s)	366
BssNI	GRCGYC	3 cut(s)	81, 137, 501
BssT1I	CCWWGG	2 cut(s)	6, 772
Bst2UI	CCWGG	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	326
BstACI	GRCGYC	3 cut(s)	81, 137, 501
BstC8I	GCNNGC	7 cut(s)	102, 314, 352, 528, 790, 936, 1032
BstDEI	CTNAG	3 cut(s)	106, 816, 954
BstDSI	CCRYGG	2 cut(s)	149, 310
BstENI	CCTNNNNNAGG	1 cut(s)	578
BstF5I	GGATG	1 cut(s)	127
BstFNI	CGCG	3 cut(s)	151, 312, 716
BstH2I	RGCGCY	3 cut(s)	140, 504, 856
BstHHI	GCGC	4 cut(s)	139, 385, 503, 855
BstKTI	GATC	1 cut(s)	369
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	1 cut(s)	366
BstMWI	GCNNNNNNNGC	7 cut(s)	31, 101, 145, 213, 509, 512, 722
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	5 cut(s)	116, 158, 207, 230, 451
BstSLI	GKGCMC	1 cut(s)	630
BstUI	CGCG	3 cut(s)	151, 312, 716
BstV1I	GCAGC	7 cut(s)	31, 34, 46, 76, 132, 435, 797
BtgI	CCRYGG	2 cut(s)	149, 310
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	2 cut(s)	329, 630
Cac8I	GCNNGC	7 cut(s)	102, 314, 352, 528, 790, 936, 1032
CciI	TCATGA	1 cut(s)	1044
CfoI	GCGC	4 cut(s)	139, 385, 503, 855
Cfr10I	RCCGGY	2 cut(s)	316, 350
Cfr13I	GGNCC	7 cut(s)	156, 270, 314, 319, 535, 626, 627
Cfr42I	CCGCGG	2 cut(s)	152, 313
CseI	GACGC	3 cut(s)	70, 95, 756
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	2 cut(s)	913, 1045
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	3 cut(s)	106, 816, 954
DinI	GGCGCC	2 cut(s)	138, 502
DpnI	GATC	1 cut(s)	368
DpnII	GATC	1 cut(s)	366
DraIII	CACNNNGTG	1 cut(s)	304
DrdI	GACNNNNNNGTC	1 cut(s)	232
DseDI	GACNNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	2 cut(s)	228, 348
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
EciI	GGCGGA	1 cut(s)	215
Eco130I	CCWWGG	2 cut(s)	6, 772
Eco24I	GRGCYC	2 cut(s)	630, 683
Eco47I	GGWCC	2 cut(s)	156, 319
Eco47III	AGCGCT	1 cut(s)	854
Eco57I	CTGAAG	1 cut(s)	596
EcoNI	CCTNNNNNAGG	1 cut(s)	578
EcoO109I	RGGNCCY	1 cut(s)	626
EcoRI	GAATTC	1 cut(s)	958
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	2 cut(s)	6, 772
EcoT38I	GRGCYC	2 cut(s)	630, 683
EgeI	GGCGCC	2 cut(s)	138, 502
EheI	GGCGCC	2 cut(s)	138, 502
ErhI	CCWWGG	2 cut(s)	6, 772
FaeI	CATG	2 cut(s)	916, 1048
FaiI	YATR	4 cut(s)	477, 482, 914, 1046
FaqI	GGGAC	1 cut(s)	754
FatI	CATG	2 cut(s)	912, 1044
FauI	CCCGC	4 cut(s)	88, 212, 305, 546
FblI	GTMKAC	1 cut(s)	84
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	2 cut(s)	630, 683
GlaI	GCGC	4 cut(s)	138, 384, 502, 854
GsuI	CTGGAG	1 cut(s)	112
HaeII	RGCGCY	3 cut(s)	140, 504, 856
HgaI	GACGC	3 cut(s)	70, 95, 756
HhaI	GCGC	4 cut(s)	139, 385, 503, 855
Hin1I	GRCGYC	3 cut(s)	81, 137, 501
Hin1II	CATG	2 cut(s)	916, 1048
Hin6I	GCGC	4 cut(s)	137, 383, 501, 853
HinP1I	GCGC	4 cut(s)	137, 383, 501, 853
HincII	GTYRAC	2 cut(s)	64, 85
HindII	GTYRAC	2 cut(s)	64, 85
HindIII	AAGCTT	2 cut(s)	605, 1028
HinfI	GANTC	8 cut(s)	43, 125, 169, 404, 668, 718, 895, 1050
HphI	GGTGA	3 cut(s)	40, 316, 427
Hpy166II	GTNNAC	4 cut(s)	64, 85, 156, 307
Hpy188I	TCNGA	8 cut(s)	238, 559, 588, 652, 678, 742, 957, 1003
Hpy188III	TCNNGA	3 cut(s)	815, 836, 1045
Hpy8I	GTNNAC	4 cut(s)	64, 85, 156, 307
Hpy99I	CGWCG	5 cut(s)	86, 89, 286, 596, 641
HpyAV	CCTTC	3 cut(s)	385, 571, 816
HpyCH4V	TGCA	5 cut(s)	291, 785, 860, 892, 1034
HpyF10VI	GCNNNNNNNGC	7 cut(s)	31, 101, 145, 213, 509, 512, 722
HpyF3I	CTNAG	3 cut(s)	106, 816, 954
Hsp92I	GRCGYC	3 cut(s)	81, 137, 501
Hsp92II	CATG	2 cut(s)	916, 1048
HspAI	GCGC	4 cut(s)	137, 383, 501, 853
KasI	GGCGCC	2 cut(s)	136, 500
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
KspI	CCGCGG	2 cut(s)	152, 313
Kzo9I	GATC	1 cut(s)	366
LmnI	GCTCC	6 cut(s)	259, 339, 520, 678, 730, 982
Lsp1109I	GCAGC	7 cut(s)	31, 34, 46, 76, 132, 435, 797
LweI	GCATC	2 cut(s)	34, 1027
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	1 cut(s)	368
MbiI	CCGCTC	1 cut(s)	515
MboI	GATC	1 cut(s)	366
MboII	GAAGA	2 cut(s)	343, 376
MhlI	GDGCHC	2 cut(s)	630, 683
MluCI	AATT	4 cut(s)	343, 810, 958, 1011
Mly113I	GGCGCC	2 cut(s)	137, 501
MlyI	GAGTC	4 cut(s)	52, 119, 413, 677
MmeI	TCCRAC	2 cut(s)	216, 656
MroNI	GCCGGC	1 cut(s)	350
MroXI	GAANNNNTTC	1 cut(s)	749
MseI	TTAA	3 cut(s)	360, 1010, 1023
MspA1I	CMGCKG	3 cut(s)	151, 312, 547
MspR9I	CCNGG	5 cut(s)	118, 160, 209, 232, 453
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	3 cut(s)	151, 312, 716
MwoI	GCNNNNNNNGC	7 cut(s)	31, 101, 145, 213, 509, 512, 722
NaeI	GCCGGC	1 cut(s)	352
NarI	GGCGCC	2 cut(s)	137, 501
NciI	CCSGG	4 cut(s)	118, 160, 209, 453
NdeII	GATC	1 cut(s)	366
NgoMIV	GCCGGC	1 cut(s)	350
NlaIII	CATG	2 cut(s)	916, 1048
NlaIV	GGNNCC	8 cut(s)	138, 158, 261, 502, 537, 627, 628, 680
NmeAIII	GCCGAG	3 cut(s)	136, 165, 589
PagI	TCATGA	1 cut(s)	1044
PdiI	GCCGGC	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	749
PfeI	GAWTC	4 cut(s)	169, 718, 895, 1050
PleI	GAGTC	4 cut(s)	51, 119, 412, 676
PluTI	GGCGCC	2 cut(s)	140, 504
PpsI	GAGTC	4 cut(s)	51, 119, 412, 676
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	8 cut(s)	138, 158, 261, 502, 537, 627, 628, 680
PspOMI	GGGCCC	1 cut(s)	626
PspPI	GGNCC	7 cut(s)	156, 270, 314, 319, 535, 626, 627
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SacII	CCGCGG	2 cut(s)	152, 313
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	3 cut(s)	360, 1010, 1023
Sau3AI	GATC	1 cut(s)	366
Sau96I	GGNCC	7 cut(s)	156, 270, 314, 319, 535, 626, 627
SchI	GAGTC	4 cut(s)	52, 119, 413, 677
ScrFI	CCNGG	5 cut(s)	118, 160, 209, 232, 453
SduI	GDGCHC	2 cut(s)	630, 683
SfaNI	GCATC	2 cut(s)	34, 1027
SfoI	GGCGCC	2 cut(s)	138, 502
Sfr303I	CCGCGG	2 cut(s)	152, 313
SgrBI	CCGCGG	2 cut(s)	152, 313
SgrDI	CGTCGACG	1 cut(s)	83
SinI	GGWCC	2 cut(s)	156, 319
SmlI	CTYRAG	1 cut(s)	834
SmoI	CTYRAG	1 cut(s)	834
Sse9I	AATT	4 cut(s)	343, 810, 958, 1011
SspDI	GGCGCC	2 cut(s)	136, 500
StyD4I	CCNGG	5 cut(s)	116, 158, 207, 230, 451
StyI	CCWWGG	2 cut(s)	6, 772
TaqI	TCGA	2 cut(s)	15, 84
TaqII	GACCGA	2 cut(s)	605, 855
TasI	AATT	4 cut(s)	343, 810, 958, 1011
TfiI	GAWTC	4 cut(s)	169, 718, 895, 1050
Tru1I	TTAA	3 cut(s)	360, 1010, 1023
Tru9I	TTAA	3 cut(s)	360, 1010, 1023
TscAI	CASTG	2 cut(s)	329, 637
TseI	GCWGC	7 cut(s)	19, 22, 34, 89, 145, 448, 785
TspDTI	ATGAA	1 cut(s)	1033
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	2 cut(s)	329, 637
VpaK11BI	GGWCC	2 cut(s)	156, 319
XagI	CCTNNNNNAGG	1 cut(s)	578
XapI	RAATTY	1 cut(s)	958
XmiI	GTMKAC	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.