Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007367.1

Orthogroup ID

OG0008901

Physical Location & Seq

Genomic Coordinates Forward (+)

7827 .. 8986

Gene Structure 1160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgccttttcggttcagaattttctccaaacagtgccatgtggatttcgtcatcaccatttctatcaacctggatgagcagctgctgggttcgtcagggatggctccaccttcatcctctaaagcccacgcggcggctccctccactctcgccttctcctccgccgtctccaagtccctcaaccctctcaggctcagagccgcctctcgcggtgctgctattggccgcggatccgctctcagagctcgtatggtctcaatgccgacgattaagcccccgctctctcttgatttcgacacctctgttttcaacaaggagaagatcaacctcgctggtcacgatgagtatattgtaaagggagaaaggtacttgttccatctgccgcctgatgccttcccaggtgtatataaagatttggatgaggtgttgcagtcaaagacggtgtacttgaatgtttccaaaggtgttcttgccaagaccaaggatttggtagctgcgtttgggtcggatgatcagaccaagatttgtttagagatcttggataaaggggagcttcaggttgctgggaaggagagagagtctcagttgtccagtcaatttcgggatatcgccactattgttatgcagaaaacctataatccagagaaggcatcaagcagatcggtgttatcggttggggttcacaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000922 GO:0001501 GO:0001503 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006928 GO:0006935 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008283 GO:0009605 GO:0009888 GO:0009987 GO:0010467 GO:0015630 GO:0015631 GO:0016043 GO:0016070 GO:0016072 GO:0016477 GO:0019843 GO:0022402 GO:0022607 GO:0022613 GO:0022618 GO:0030282 GO:0030595 GO:0031214 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040011 GO:0042221 GO:0042254 GO:0042255 GO:0042256 GO:0042330 GO:0043021 GO:0043022 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048513 GO:0048534 GO:0048539 GO:0048731 GO:0048856 GO:0048870 GO:0050896 GO:0050900 GO:0051179 GO:0051674 GO:0051716 GO:0060326 GO:0060348 GO:0065003 GO:0070013 GO:0070887 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

SBDS SBDS_C

Protein Analysis

229

Amino Acids

25.01

Weight (kDa)

9.41

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBDS_N	PF01172	136 - 192	9.7e-15	Shwachman-Bodian-Diamond syndrome (SBDS) N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008901)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0135391 RchiOBHm_Chr2g0144061 RchiOBHm_Chr2g0145391 RchiOBHm_Chr5g0001751
rosa_multiflora	Rmu_sc0001298.1_g000056 Rmu_sc0002083.1_g000023 Rmu_sc0003177.1_g000031 Rmu_sc0007367.1_g000004 Rmu_sc0015288.1_g000001
rosa_roxburghii	Rroxscaffold_3G00244700 Rroxscaffold_4G00288140 Rroxscaffold_5G00347610
rosa_samantha	Rh1AG243000 Rh1CG226700 Rh1DG008100 Rh2AG337200 Rh5AG014000 Rh5AG127400 Rh5AG127800 Rh5BG548400 Rh5CG015100 Rh5CG571600 Rh7CG194400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	236, 280
AccII	CGCG	3 cut(s)	131, 210, 228
AclWI	GGATC	2 cut(s)	225, 238
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	539
AfaI	GTAC	2 cut(s)	368, 446
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	310, 451
AjnI	CCWGG	2 cut(s)	69, 397
AluBI	AGCT	4 cut(s)	82, 245, 494, 553
AluI	AGCT	4 cut(s)	82, 245, 494, 553
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	3 cut(s)	172, 259, 585
AlwI	GGATC	2 cut(s)	225, 238
AlwNI	CAGNNNCTG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	4 cut(s)	79, 82, 215, 494
ApoI	RAATTY	1 cut(s)	18
ArsI	GACNNNNNNTTYG	2 cut(s)	469, 501
AsuHPI	GGTGA	1 cut(s)	46
BamHI	GGATCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	4 cut(s)	69, 91, 202, 481
BccI	CCATC	2 cut(s)	94, 384
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	2 cut(s)	71, 399
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	3 cut(s)	172, 259, 585
BglI	GCCNNNNNGGC	1 cut(s)	131
BglII	AGATCT	1 cut(s)	534
BisI	GCNGC	9 cut(s)	80, 83, 132, 135, 201, 216, 226, 383, 495
BlsI	GCNGC	9 cut(s)	81, 84, 133, 136, 202, 217, 227, 384, 496
Bme1390I	CCNGG	2 cut(s)	71, 399
BmiI	GGNNCC	3 cut(s)	105, 138, 232
BmrFI	CCNGG	2 cut(s)	71, 399
BmsI	GCATC	2 cut(s)	379, 659
BplI	GAGNNNNNCTC	2 cut(s)	565, 597
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	3 cut(s)	226, 397, 480
BsaXI	ACNNNNNCTCC	2 cut(s)	563, 593
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	591
BseBI	CCWGG	2 cut(s)	71, 399
BseDI	CCNNGG	3 cut(s)	226, 397, 480
BseGI	GGATG	5 cut(s)	79, 105, 113, 424, 514
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	4 cut(s)	202, 208, 253, 596
BseNI	ACTGG	1 cut(s)	591
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	4 cut(s)	69, 91, 202, 481
BseYI	CCCAGC	2 cut(s)	85, 563
Bsh1236I	CGCG	3 cut(s)	131, 210, 228
BshFI	GGCC	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	3 cut(s)	172, 259, 585
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	225
Bso31I	GGTCTC	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	5 cut(s)	230, 321, 511, 534, 659
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	4 cut(s)	201, 207, 252, 595
BspFNI	CGCG	3 cut(s)	131, 210, 228
BspLI	GGNNCC	3 cut(s)	105, 138, 232
BspPI	GGATC	2 cut(s)	225, 238
BspTNI	GGTCTC	1 cut(s)	259
BsrBI	CCGCTC	2 cut(s)	236, 280
BsrI	ACTGG	1 cut(s)	591
BssECI	CCNNGG	3 cut(s)	226, 397, 480
BssMI	GATC	5 cut(s)	230, 321, 511, 534, 659
BssT1I	CCWWGG	1 cut(s)	480
Bst2UI	CCWGG	2 cut(s)	71, 399
Bst4CI	ACNGT	2 cut(s)	33, 442
BstDEI	CTNAG	4 cut(s)	188, 194, 239, 582
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	5 cut(s)	79, 105, 113, 424, 514
BstFNI	CGCG	3 cut(s)	131, 210, 228
BstKTI	GATC	5 cut(s)	233, 324, 514, 537, 662
BstMAI	GTCTC	3 cut(s)	172, 259, 585
BstMBI	GATC	5 cut(s)	230, 321, 511, 534, 659
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 242
BstNI	CCWGG	2 cut(s)	71, 399
BstSCI	CCNGG	2 cut(s)	69, 397
BstUI	CGCG	3 cut(s)	131, 210, 228
BstV1I	GCAGC	4 cut(s)	69, 91, 202, 481
BstX2I	RGATCY	2 cut(s)	230, 534
BstXI	CCANNNNNNTGG	1 cut(s)	487
BstYI	RGATCY	2 cut(s)	230, 534
BsuRI	GGCC	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	5 cut(s)	79, 105, 113, 424, 514
BtsIMutI	CAGTG	1 cut(s)	38
CaiI	CAGNNNCTG	1 cut(s)	85
Cfr42I	CCGCGG	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	367, 445
CviAII	CATG	1 cut(s)	38
CviQI	GTAC	2 cut(s)	367, 445
DdeI	CTNAG	4 cut(s)	188, 194, 239, 582
DpnI	GATC	5 cut(s)	232, 323, 513, 536, 661
DpnII	GATC	5 cut(s)	230, 321, 511, 534, 659
EaeI	YGGCCR	1 cut(s)	223
EciI	GGCGGA	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	480
Eco24I	GRGCYC	1 cut(s)	247
Eco31I	GGTCTC	1 cut(s)	259
Eco32I	GATATC	1 cut(s)	607
Eco53kI	GAGCTC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	539
EcoICRI	GAGCTC	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	69, 397
EcoRV	GATATC	1 cut(s)	607
EcoT14I	CCWWGG	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	480
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	1 cut(s)	41
FaiI	YATR	7 cut(s)	39, 251, 348, 406, 408, 623, 636
FalI	AAGNNNNNCTT	4 cut(s)	453, 485, 537, 569
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	1 cut(s)	37
FauI	CCCGC	1 cut(s)	285
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	9 cut(s)	80, 83, 132, 135, 201, 216, 226, 383, 495
FokI	GGATG	5 cut(s)	86, 100, 112, 431, 521
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	9 cut(s)	80, 83, 132, 135, 201, 216, 226, 383, 495
GluI	GCNGC	9 cut(s)	80, 83, 132, 135, 201, 216, 226, 383, 495
GsaI	CCCAGC	2 cut(s)	89, 567
HaeIII	GGCC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	41
HinfI	GANTC	1 cut(s)	578
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	445, 682
Hpy188I	TCNGA	5 cut(s)	17, 197, 242, 508, 516
Hpy188III	TCNNGA	4 cut(s)	287, 338, 602, 641
Hpy8I	GTNNAC	2 cut(s)	445, 682
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	5 cut(s)	120, 163, 403, 562, 640
HpyCH4III	ACNGT	2 cut(s)	33, 442
HpyCH4V	TGCA	2 cut(s)	430, 625
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 242
HpyF3I	CTNAG	4 cut(s)	188, 194, 239, 582
Hsp92II	CATG	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	511
KspI	CCGCGG	1 cut(s)	229
Kzo9I	GATC	5 cut(s)	230, 321, 511, 534, 659
LmnI	GCTCC	3 cut(s)	109, 142, 550
Lsp1109I	GCAGC	4 cut(s)	69, 91, 202, 481
LweI	GCATC	2 cut(s)	379, 659
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	5 cut(s)	232, 323, 513, 536, 661
MbiI	CCGCTC	2 cut(s)	236, 280
MboI	GATC	5 cut(s)	230, 321, 511, 534, 659
MboII	GAAGA	1 cut(s)	331
MflI	RGATCY	2 cut(s)	230, 534
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	2 cut(s)	18, 596
MlyI	GAGTC	1 cut(s)	587
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	9 cut(s)	127, 151, 169, 188, 195, 214, 310, 338, 415
MseI	TTAA	1 cut(s)	270
MspA1I	CMGCKG	2 cut(s)	82, 228
MspR9I	CCNGG	2 cut(s)	71, 399
MvaI	CCWGG	2 cut(s)	71, 399
MvnI	CGCG	3 cut(s)	131, 210, 228
MwoI	GCNNNNNNNGC	2 cut(s)	131, 242
NdeII	GATC	5 cut(s)	230, 321, 511, 534, 659
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	3 cut(s)	105, 138, 232
NmuCI	GTSAC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PkrI	GCNGC	9 cut(s)	81, 84, 133, 136, 202, 217, 227, 384, 496
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
Psp124BI	GAGCTC	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	69, 397
PspFI	CCCAGC	2 cut(s)	85, 563
PspGI	CCWGG	2 cut(s)	69, 397
PspN4I	GGNNCC	3 cut(s)	105, 138, 232
PstNI	CAGNNNCTG	1 cut(s)	85
PsuI	RGATCY	2 cut(s)	230, 534
PvuII	CAGCTG	1 cut(s)	82
RsaI	GTAC	2 cut(s)	368, 446
RsaNI	GTAC	2 cut(s)	367, 445
SacI	GAGCTC	1 cut(s)	247
SacII	CCGCGG	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	9 cut(s)	80, 83, 132, 135, 201, 216, 226, 383, 495
Sau3AI	GATC	5 cut(s)	230, 321, 511, 534, 659
SchI	GAGTC	1 cut(s)	587
ScrFI	CCNGG	2 cut(s)	71, 399
SduI	GDGCHC	1 cut(s)	247
SfaNI	GCATC	2 cut(s)	379, 659
Sfr303I	CCGCGG	1 cut(s)	229
SgrBI	CCGCGG	1 cut(s)	229
Sse9I	AATT	2 cut(s)	18, 596
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	2 cut(s)	69, 397
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	33, 442
TaqI	TCGA	1 cut(s)	294
TasI	AATT	2 cut(s)	18, 596
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	5 cut(s)	134, 137, 203, 228, 385
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	4 cut(s)	79, 82, 215, 494
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	102
TspRI	CASTG	1 cut(s)	38
XapI	RAATTY	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.