Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026291.1

Orthogroup ID

OG0008847

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1945

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026291.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1318 bp

gattgatgttcttgcaagagggggagactgtgttatgtggtttgatgaattggttgatatgagaaactatccggatgaaggggacgagatttatattcgaatggcaagaaaagaactagagtccattgctgatgctaagaagaaaaagcgagtgaaagtggttgtcaccattgtcatgtcatcactcagtgggatgcttattattggtgttgttgtctgcatcattaatcggaataggaagacaaagaggagagctgaaagcagagaaaatccatatcaagtacacagggaagaaatgcaggaagaggacctcgagttacctatctgggattttgatactatttcaactgctactgaggagttctctatagcaaataaaattggagagggtggctttggtagtgtatacaagggtgtattaccttctgggcaagaaattgcagtgaagagactgtcagtgcattctggacagggcctccaagaattcaagaatgaggttgtcttgattgcaaagcttcaacaccggaatcttgtgaagctcttgggatgctgtattgaaagagaagaaaaaatgctcatttacgagtaccttcccaataagagcttggaccgattcctatttgatagaagacgaaaagaagtattgacttggaggaaacgttttgacattgttatgggaattgcgcgaggactactgtatcttcatcaagactccaggctgagaattatccatagagatctcaaaacaagcaacattttactagacaatgagatgaagtccaagatttctgactttggaacagcaagaatttttgggggagaacagactgaacaaatgaccaggagagtgattggaacatatggttatatgtctccggaatatgctatgagtggacacttctctgtgaaatcagatgtattcagcttcggtgtgttggtcttggagataataagtggcagaaagaattcaggatttcatcaccctgagcatgacctcaatcttctaggacatgcatggaatctgtggaatgaaggaaatccattgcaactgctggacgcccatatagagaaatcttcttctgtcaatgaagtgacaagatgtattcaagtagcccttctgtgtgtgcagcaacggatggatgatagaccaactatgtcaactgttttattaatgttgtctaatgagaattatttgatgccccaaccgaaagaacctggttttattactgaacttcttcccatgggagatacatcatcaagtggaaagtatcttcatactgctaatgatttaactgtcacaattcaagatggacggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

438

Amino Acids

50.1

Weight (kDa)

6.7

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03420 FvH4_3g03420
rosa_chinensis	RchiOBHm_Chr5g0005191 RchiOBHm_Chr5g0005201
rosa_laevigata	RLG00000031298 RLG00000031299
rosa_multiflora	Rmu_sc0026291.1_g000001 Rmu_sc0026292.1_g000001 Rmu_sc0038897.1_g000001 Rmu_sc0038898.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070470
rosa_rugosa	Rorug04G0415600 Rorug04G0415700 Rorug04G0415800 Rorug04G0415900 Rorug04G0416000
rosa_samantha	Rh5CG048600 Rh5CG048700 Rh5DG013100 Rh5DG043100
rosa_wichuraiana	Rw0G003570 Rw5G004200 Rw5G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	406
AccII	CGCG	1 cut(s)	686
AccIII	TCCGGA	2 cut(s)	71, 875
AclI	AACGTT	1 cut(s)	659
AcsI	RAATTY	3 cut(s)	483, 808, 965
AcyI	GRCGYC	1 cut(s)	1057
AdeI	CACNNNGTG	1 cut(s)	189
AfaI	GTAC	2 cut(s)	283, 588
AfiI	CCNNNNNNNGG	1 cut(s)	78
AgsI	TTSAA	6 cut(s)	346, 488, 519, 558, 1107, 1305
AjnI	CCWGG	3 cut(s)	714, 840, 1214
AluBI	AGCT	5 cut(s)	255, 515, 539, 604, 925
AluI	AGCT	5 cut(s)	255, 515, 539, 604, 925
Alw26I	GTCTC	3 cut(s)	19, 443, 877
Ama87I	CYCGRG	1 cut(s)	312
Aor13HI	TCCGGA	2 cut(s)	71, 875
AoxI	GGCC	1 cut(s)	473
ApeKI	GCWGC	1 cut(s)	1127
ApoI	RAATTY	3 cut(s)	483, 808, 965
AseI	ATTAAT	2 cut(s)	226, 1170
Asp700I	GAANNNNTTC	2 cut(s)	965, 1234
AspLEI	GCGC	1 cut(s)	686
AspS9I	GGNCC	3 cut(s)	308, 473, 608
AsuHPI	GGTGA	2 cut(s)	158, 972
AsuII	TTCGAA	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	312
AvaII	GGWCC	2 cut(s)	308, 608
BaeI	ACNNNNGTAYC	2 cut(s)	681, 714
BbsI	GAAGAC	2 cut(s)	246, 635
BbvI	GCAGC	1 cut(s)	1139
BccI	CCATC	2 cut(s)	1130, 1302
BciT130I	CCWGG	3 cut(s)	716, 842, 1216
BcoDI	GTCTC	3 cut(s)	19, 443, 877
BfaI	CTAG	3 cut(s)	117, 762, 1005
BfmI	CTRYAG	1 cut(s)	367
BglII	AGATCT	1 cut(s)	737
BisI	GCNGC	1 cut(s)	1128
BlsI	GCNGC	1 cut(s)	1129
Bme1390I	CCNGG	3 cut(s)	716, 842, 1216
Bme18I	GGWCC	2 cut(s)	308, 608
BmeT110I	CYCGRG	1 cut(s)	312
BmgT120I	GGNCC	3 cut(s)	308, 473, 608
BmrFI	CCNGG	3 cut(s)	716, 842, 1216
BmsI	GCATC	5 cut(s)	122, 184, 229, 537, 1186
BpiI	GAAGAC	2 cut(s)	246, 635
BplI	GAGNNNNNCTC	2 cut(s)	348, 380
BpmI	CTGGAG	1 cut(s)	698
Bpu10I	CCTNAGC	1 cut(s)	985
Bpu14I	TTCGAA	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	1057
BsaJI	CCNNGG	1 cut(s)	1240
BsaWI	WCCGGW	3 cut(s)	71, 523, 875
BsaXI	ACNNNNNCTCC	6 cut(s)	16, 46, 460, 490, 644, 674
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse3DI	GCAATG	2 cut(s)	124, 1041
BseAI	TCCGGA	2 cut(s)	71, 875
BseBI	CCWGG	3 cut(s)	716, 842, 1216
BseDI	CCNNGG	1 cut(s)	1240
BseGI	GGATG	5 cut(s)	80, 199, 552, 1141, 1145
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMI	GCAATG	2 cut(s)	124, 1041
BseMII	CTCAG	4 cut(s)	200, 346, 711, 976
BseRI	GAGGAG	2 cut(s)	263, 372
BseXI	GCAGC	1 cut(s)	1139
BsgI	GTGCAG	1 cut(s)	1146
Bsh1236I	CGCG	1 cut(s)	686
BshFI	GGCC	1 cut(s)	475
BsiHKCI	CYCGRG	1 cut(s)	312
BsiSI	CCGG	3 cut(s)	72, 524, 876
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmAI	GTCTC	3 cut(s)	19, 443, 877
BsmFI	GGGAC	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	475
BsoBI	CYCGRG	1 cut(s)	312
Bsp119I	TTCGAA	1 cut(s)	98
Bsp13I	TCCGGA	2 cut(s)	71, 875
Bsp143I	GATC	1 cut(s)	737
Bsp19I	CCATGG	1 cut(s)	1240
BspANI	GGCC	1 cut(s)	475
BspCNI	CTCAG	4 cut(s)	199, 347, 712, 977
BspEI	TCCGGA	2 cut(s)	71, 875
BspFNI	CGCG	1 cut(s)	686
BspT104I	TTCGAA	1 cut(s)	98
BsrDI	GCAATG	2 cut(s)	124, 1041
BssECI	CCNNGG	1 cut(s)	1240
BssMI	GATC	1 cut(s)	737
BssNAI	GTATAC	1 cut(s)	407
BssNI	GRCGYC	1 cut(s)	1057
BssT1I	CCWWGG	1 cut(s)	1240
Bst1107I	GTATAC	1 cut(s)	407
Bst2UI	CCWGG	3 cut(s)	716, 842, 1216
Bst4CI	ACNGT	6 cut(s)	30, 454, 697, 1163, 1295, 1315
Bst6I	CTCTTC	2 cut(s)	298, 441
BstACI	GRCGYC	1 cut(s)	1057
BstBI	TTCGAA	1 cut(s)	98
BstDEI	CTNAG	5 cut(s)	136, 186, 355, 720, 985
BstDSI	CCRYGG	1 cut(s)	1240
BstF5I	GGATG	5 cut(s)	80, 199, 552, 1141, 1145
BstFNI	CGCG	1 cut(s)	686
BstHHI	GCGC	1 cut(s)	686
BstKTI	GATC	1 cut(s)	740
BstMAI	GTCTC	3 cut(s)	19, 443, 877
BstMBI	GATC	1 cut(s)	737
BstNI	CCWGG	3 cut(s)	716, 842, 1216
BstNSI	RCATGY	1 cut(s)	1014
BstSCI	CCNGG	3 cut(s)	714, 840, 1214
BstSFI	CTRYAG	1 cut(s)	367
BstUI	CGCG	1 cut(s)	686
BstV1I	GCAGC	1 cut(s)	1139
BstV2I	GAAGAC	2 cut(s)	246, 635
BstX2I	RGATCY	1 cut(s)	737
BstYI	RGATCY	1 cut(s)	737
BstZ17I	GTATAC	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	475
BtgI	CCRYGG	1 cut(s)	1240
BtsCI	GGATG	5 cut(s)	80, 199, 552, 1141, 1145
BtsI	GCAGTG	1 cut(s)	448
BtsIMutI	CAGTG	3 cut(s)	194, 448, 463
CfoI	GCGC	1 cut(s)	686
Cfr13I	GGNCC	3 cut(s)	308, 473, 608
CseI	GACGC	1 cut(s)	1065
CsiI	ACCWGGT	1 cut(s)	1214
Csp6I	GTAC	2 cut(s)	282, 587
CviAII	CATG	5 cut(s)	176, 990, 1011, 1015, 1241
CviJI	RGCY	9 cut(s)	255, 394, 475, 515, 539, 604, 719, 925, 1113
CviKI_1	RGCY	9 cut(s)	255, 394, 475, 515, 539, 604, 719, 925, 1113
CviQI	GTAC	2 cut(s)	282, 587
DdeI	CTNAG	5 cut(s)	136, 186, 355, 720, 985
DpnI	GATC	1 cut(s)	739
DpnII	GATC	1 cut(s)	737
DraIII	CACNNNGTG	1 cut(s)	189
Eam1104I	CTCTTC	2 cut(s)	298, 441
EarI	CTCTTC	2 cut(s)	298, 441
Eco130I	CCWWGG	1 cut(s)	1240
Eco47I	GGWCC	2 cut(s)	308, 608
Eco88I	CYCGRG	1 cut(s)	312
EcoO109I	RGGNCCY	2 cut(s)	308, 473
EcoRI	GAATTC	2 cut(s)	483, 965
EcoRII	CCWGG	3 cut(s)	714, 840, 1214
EcoT14I	CCWWGG	1 cut(s)	1240
EcoT22I	ATGCAT	1 cut(s)	1016
ErhI	CCWWGG	1 cut(s)	1240
FaeI	CATG	5 cut(s)	179, 993, 1014, 1018, 1244
FalI	AAGNNNNNCTT	2 cut(s)	1099, 1131
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	5 cut(s)	175, 989, 1010, 1014, 1240
FauNDI	CATATG	1 cut(s)	860
FblI	GTMKAC	1 cut(s)	406
Fnu4HI	GCNGC	1 cut(s)	1128
FokI	GGATG	5 cut(s)	87, 206, 559, 1148, 1152
Fsp4HI	GCNGC	1 cut(s)	1128
FspBI	CTAG	3 cut(s)	117, 762, 1005
GlaI	GCGC	1 cut(s)	685
GluI	GCNGC	1 cut(s)	1128
GsuI	CTGGAG	1 cut(s)	698
HaeIII	GGCC	1 cut(s)	475
HapII	CCGG	3 cut(s)	72, 524, 876
HgaI	GACGC	1 cut(s)	1065
HhaI	GCGC	1 cut(s)	686
Hin1I	GRCGYC	1 cut(s)	1057
Hin1II	CATG	5 cut(s)	179, 993, 1014, 1018, 1244
Hin6I	GCGC	1 cut(s)	684
HinP1I	GCGC	1 cut(s)	684
HincII	GTYRAC	1 cut(s)	1159
HindII	GTYRAC	1 cut(s)	1159
HindIII	AAGCTT	1 cut(s)	513
HinfI	GANTC	5 cut(s)	120, 527, 613, 711, 1019
HpaII	CCGG	3 cut(s)	72, 524, 876
HphI	GGTGA	2 cut(s)	158, 972
Hpy166II	GTNNAC	4 cut(s)	284, 407, 894, 1159
Hpy188I	TCNGA	3 cut(s)	232, 791, 914
Hpy188III	TCNNGA	8 cut(s)	72, 466, 488, 503, 708, 876, 970, 1305
Hpy8I	GTNNAC	4 cut(s)	284, 407, 894, 1159
HpyAV	CCTTC	5 cut(s)	72, 433, 600, 1026, 1125
HpyCH4III	ACNGT	6 cut(s)	30, 454, 697, 1163, 1295, 1315
HpyCH4IV	ACGT	1 cut(s)	659
HpyCH4V	TGCA	9 cut(s)	15, 220, 299, 441, 461, 510, 1014, 1046, 1127
HpyF3I	CTNAG	5 cut(s)	136, 186, 355, 720, 985
HpySE526I	ACGT	1 cut(s)	659
Hsp92I	GRCGYC	1 cut(s)	1057
Hsp92II	CATG	5 cut(s)	179, 993, 1014, 1018, 1244
HspAI	GCGC	1 cut(s)	684
Kpn2I	TCCGGA	2 cut(s)	71, 875
Kzo9I	GATC	1 cut(s)	737
Lsp1109I	GCAGC	1 cut(s)	1139
LweI	GCATC	5 cut(s)	122, 184, 229, 537, 1186
MabI	ACCWGGT	1 cut(s)	1214
MaeI	CTAG	3 cut(s)	117, 762, 1005
MaeII	ACGT	1 cut(s)	659
MaeIII	GTNAC	4 cut(s)	164, 316, 1091, 1295
MalI	GATC	1 cut(s)	739
MboI	GATC	1 cut(s)	737
MflI	RGATCY	1 cut(s)	737
MlyI	GAGTC	2 cut(s)	129, 705
Mph1103I	ATGCAT	1 cut(s)	1016
MroI	TCCGGA	2 cut(s)	71, 875
MroXI	GAANNNNTTC	2 cut(s)	965, 1234
MseI	TTAA	3 cut(s)	226, 1170, 1290
MslI	CAYNNNNRTG	2 cut(s)	174, 672
MspI	CCGG	3 cut(s)	72, 524, 876
MspR9I	CCNGG	3 cut(s)	716, 842, 1216
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	3 cut(s)	716, 842, 1216
MvnI	CGCG	1 cut(s)	686
NcoI	CCATGG	1 cut(s)	1240
NdeI	CATATG	1 cut(s)	860
NdeII	GATC	1 cut(s)	737
NlaIII	CATG	5 cut(s)	179, 993, 1014, 1018, 1244
NmuCI	GTSAC	3 cut(s)	164, 1091, 1295
NsiI	ATGCAT	1 cut(s)	1016
NspI	RCATGY	1 cut(s)	1014
NspV	TTCGAA	1 cut(s)	98
PaeR7I	CTCGAG	1 cut(s)	312
PctI	GAATGC	1 cut(s)	461
PdmI	GAANNNNTTC	2 cut(s)	965, 1234
PfeI	GAWTC	3 cut(s)	527, 613, 1019
PkrI	GCNGC	1 cut(s)	1129
PleI	GAGTC	2 cut(s)	128, 705
PpsI	GAGTC	2 cut(s)	128, 705
PpuMI	RGGWCCY	1 cut(s)	308
PshBI	ATTAAT	2 cut(s)	226, 1170
Psp1406I	AACGTT	1 cut(s)	659
Psp5II	RGGWCCY	1 cut(s)	308
Psp6I	CCWGG	3 cut(s)	714, 840, 1214
PspGI	CCWGG	3 cut(s)	714, 840, 1214
PspPI	GGNCC	3 cut(s)	308, 473, 608
PspPPI	RGGWCCY	1 cut(s)	308
PspXI	VCTCGAGB	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	737
RsaI	GTAC	2 cut(s)	283, 588
RsaNI	GTAC	2 cut(s)	282, 587
RseI	CAYNNNNRTG	2 cut(s)	174, 672
SaqAI	TTAA	3 cut(s)	226, 1170, 1290
SatI	GCNGC	1 cut(s)	1128
Sau3AI	GATC	1 cut(s)	737
Sau96I	GGNCC	3 cut(s)	308, 473, 608
SchI	GAGTC	2 cut(s)	129, 705
ScrFI	CCNGG	3 cut(s)	716, 842, 1216
SexAI	ACCWGGT	1 cut(s)	1214
SfaNI	GCATC	5 cut(s)	122, 184, 229, 537, 1186
SfcI	CTRYAG	1 cut(s)	367
Sfr274I	CTCGAG	1 cut(s)	312
SfuI	TTCGAA	1 cut(s)	98
SinI	GGWCC	2 cut(s)	308, 608
SlaI	CTCGAG	1 cut(s)	312
SmiMI	CAYNNNNRTG	2 cut(s)	174, 672
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
SspMI	CTAG	3 cut(s)	117, 762, 1005
StyD4I	CCNGG	3 cut(s)	714, 840, 1214
StyI	CCWWGG	1 cut(s)	1240
TaaI	ACNGT	6 cut(s)	30, 454, 697, 1163, 1295, 1315
TaiI	ACGT	1 cut(s)	662
TaqI	TCGA	2 cut(s)	98, 313
TaqII	GACCGA	1 cut(s)	625
TatI	WGTACW	1 cut(s)	281
TfiI	GAWTC	3 cut(s)	527, 613, 1019
Tru1I	TTAA	3 cut(s)	226, 1170, 1290
Tru9I	TTAA	3 cut(s)	226, 1170, 1290
TscAI	CASTG	3 cut(s)	194, 448, 463
TseFI	GTSAC	3 cut(s)	164, 1091, 1295
TseI	GCWGC	1 cut(s)	1127
Tsp45I	GTSAC	3 cut(s)	164, 1091, 1295
TspDTI	ATGAA	8 cut(s)	61, 91, 693, 789, 966, 1045, 1102, 1263
TspGWI	ACGGA	1 cut(s)	1148
TspRI	CASTG	3 cut(s)	194, 448, 463
VpaK11BI	GGWCC	2 cut(s)	308, 608
VspI	ATTAAT	2 cut(s)	226, 1170
XapI	RAATTY	3 cut(s)	483, 808, 965
XceI	RCATGY	1 cut(s)	1014
XcmI	CCANNNNNNNNNTGG	1 cut(s)	602
XhoI	CTCGAG	1 cut(s)	312
XmiI	GTMKAC	1 cut(s)	406
XmnI	GAANNNNTTC	2 cut(s)	965, 1234
XspI	CTAG	3 cut(s)	117, 762, 1005
Zsp2I	ATGCAT	1 cut(s)	1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.