Rmu_sc0026292.1_g000001

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026292.1
OG0008847
Physical Location & Seq
Forward (+)
1 .. 1136
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026292.1_g000001.1.cds

Sequence Viewer

Length: 925 bp
ctcttggacaatggcaatctgatcttgagagatgaaagtggtgcagatgcagaggggtatgtgatttggcagagttttgatgacataacagacactttgttgcctgaaatgaagcttggctggaatttggtcacaggttcaaaccggaatatgacgtcatggttgtcctccagtgacccctctgccggagaatttactttcagtgtggacaggcctgctcaagcacctcagttggtggttaggaaaaggtctgcgaagctatatagatgggggccttgggatggagtcagattcagtggtagcaatgagctcaagtccaatccggttttcactccaattttcaatataagcagtgaagaggtctattacacatttgaacttatagacaattctactttatcaaggtttgtgatgaatcaagatggctcggttgtatattttacttggagagcaagcaacaatcaatggggtggtgtggtgacacttcaacaaaacacttgtgatgggtatggaatctgtggtccttatggtagttgtgactccaagggtcctagttgtctgtgtttgaaaggatttgctcccaaatcaccacaggaatggcagcagctaacttggaccggaggctgtgtgcgaaattgggacttggattgtaagaatggagatggctttgttaggtacgagggattgaagttgccagataattcgttcctgtttgcaaacaggagtttgagcctcaaggaatgtgaggcagagtgtttgaagaactgttcttgtatggcttatactaggattgatattcatgcaagagggggagactgtgttatgtggtttgatgaattggttgatatgagaaactatcctgatggcggagaagagatttatattcgaatggcaagaaaagaactaggtatgtattgtcttgctt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

308

Amino Acids

34.7

Weight (kDa)

4.77

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 158
AciI CCGC 1 cut(s) 867
AcsI RAATTY 2 cut(s) 124, 191
AcyI GRCGYC 1 cut(s) 155
AfaI GTAC 1 cut(s) 677
AfiI CCNNNNNNNGG 3 cut(s) 185, 281, 866
AgsI TTSAA 7 cut(s) 141, 343, 377, 488, 568, 688, 760
AjuI GAANNNNNNNTTGG 4 cut(s) 99, 131, 311, 343
AluBI AGCT 4 cut(s) 115, 259, 310, 607
AluI AGCT 4 cut(s) 115, 259, 310, 607
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 807
AoxI GGCC 2 cut(s) 212, 272
ApeKI GCWGC 2 cut(s) 601, 604
ApoI RAATTY 2 cut(s) 124, 191
AspS9I GGNCC 4 cut(s) 272, 521, 548, 615
AsuHPI GGTGA 2 cut(s) 490, 579
AsuII TTCGAA 1 cut(s) 886
AvaII GGWCC 3 cut(s) 521, 548, 615
BanII GRGCYC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 2 cut(s) 613, 616
BccI CCATC 6 cut(s) 261, 275, 416, 497, 656, 857
BcoDI GTCTC 1 cut(s) 807
BfaI CTAG 3 cut(s) 552, 786, 905
BisI GCNGC 2 cut(s) 602, 605
BlsI GCNGC 2 cut(s) 603, 606
Bme18I GGWCC 3 cut(s) 521, 548, 615
BmgT120I GGNCC 4 cut(s) 272, 521, 548, 615
BmiI GGNNCC 2 cut(s) 273, 549
BmsI GCATC 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 154
Bpu14I TTCGAA 1 cut(s) 886
BpuEI CTTGAG 4 cut(s) 46, 204, 296, 719
BsaHI GRCGYC 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 275, 543
BsaWI WCCGGW 3 cut(s) 144, 322, 617
BsaXI ACNNNNNCTCC 4 cut(s) 612, 642, 804, 834
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 281, 866
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 275, 543
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 3 cut(s) 185, 281, 866
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 171
BseXI GCAGC 2 cut(s) 613, 616
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 2 cut(s) 214, 274
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 4 cut(s) 145, 186, 323, 618
BslFI GGGAC 1 cut(s) 653
BslI CCNNNNNNNGG 3 cut(s) 185, 281, 866
BsmAI GTCTC 1 cut(s) 807
BsmFI GGGAC 1 cut(s) 653
BsnI GGCC 2 cut(s) 214, 274
Bsp119I TTCGAA 1 cut(s) 886
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 1 cut(s) 867
BspANI GGCC 2 cut(s) 214, 274
BspCNI CTCAG 1 cut(s) 241
BspLI GGNNCC 2 cut(s) 273, 549
BspT104I TTCGAA 1 cut(s) 886
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 2 cut(s) 275, 543
BssMI GATC 1 cut(s) 21
BssNI GRCGYC 1 cut(s) 155
BssT1I CCWWGG 2 cut(s) 275, 543
Bst4CI ACNGT 2 cut(s) 767, 818
Bst6I CTCTTC 2 cut(s) 351, 867
BstACI GRCGYC 1 cut(s) 155
BstBI TTCGAA 1 cut(s) 886
BstC8I GCNNGC 2 cut(s) 216, 454
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 807
BstMBI GATC 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 613, 616
BstXI CCANNNNNNTGG 1 cut(s) 597
BsuRI GGCC 2 cut(s) 214, 274
BtsCI GGATG 1 cut(s) 286
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 4 cut(s) 178, 208, 301, 358
Cac8I GCNNGC 2 cut(s) 216, 454
Cfr13I GGNCC 4 cut(s) 272, 521, 548, 615
Csp6I GTAC 1 cut(s) 676
CviAII CATG 2 cut(s) 159, 800
CviQI GTAC 1 cut(s) 676
DdeI CTNAG 1 cut(s) 228
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eam1104I CTCTTC 2 cut(s) 351, 867
EarI CTCTTC 2 cut(s) 351, 867
EciI GGCGGA 1 cut(s) 882
Ecl136II GAGCTC 1 cut(s) 310
Eco130I CCWWGG 2 cut(s) 275, 543
Eco147I AGGCCT 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 312
Eco47I GGWCC 3 cut(s) 521, 548, 615
Eco53kI GAGCTC 1 cut(s) 310
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 2 cut(s) 272, 548
EcoT14I CCWWGG 2 cut(s) 275, 543
EcoT38I GRGCYC 1 cut(s) 312
ErhI CCWWGG 2 cut(s) 275, 543
FaeI CATG 2 cut(s) 162, 803
FaqI GGGAC 1 cut(s) 653
FatI CATG 2 cut(s) 158, 799
Fnu4HI GCNGC 2 cut(s) 602, 605
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 2 cut(s) 602, 605
FspBI CTAG 3 cut(s) 552, 786, 905
GluI GCNGC 2 cut(s) 602, 605
GsuI CTGGAG 1 cut(s) 154
HaeIII GGCC 2 cut(s) 214, 274
HapII CCGG 4 cut(s) 145, 186, 323, 618
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 2 cut(s) 162, 803
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 5 cut(s) 285, 291, 415, 513, 539
HpaII CCGG 4 cut(s) 145, 186, 323, 618
HphI GGTGA 2 cut(s) 490, 579
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 21, 290
Hpy188III TCNNGA 3 cut(s) 25, 419, 860
Hpy8I GTNNAC 1 cut(s) 208
HpyCH4III ACNGT 2 cut(s) 767, 818
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 4 cut(s) 44, 50, 716, 803
HpyF3I CTNAG 1 cut(s) 228
HpySE526I ACGT 1 cut(s) 155
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 2 cut(s) 162, 803
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 1 cut(s) 583
Lsp1109I GCAGC 2 cut(s) 613, 616
LweI GCATC 1 cut(s) 37
MaeI CTAG 3 cut(s) 552, 786, 905
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 4 cut(s) 130, 173, 478, 536
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 3 cut(s) 368, 772, 884
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 7 cut(s) 124, 191, 336, 388, 634, 700, 836
MlyI GAGTC 2 cut(s) 294, 533
MslI CAYNNNNRTG 1 cut(s) 595
MspI CCGG 4 cut(s) 145, 186, 323, 618
NdeII GATC 1 cut(s) 21
NlaIII CATG 2 cut(s) 162, 803
NlaIV GGNNCC 2 cut(s) 273, 549
NmuCI GTSAC 4 cut(s) 130, 173, 478, 536
NspV TTCGAA 1 cut(s) 886
PceI AGGCCT 1 cut(s) 214
PfeI GAWTC 3 cut(s) 291, 415, 513
PkrI GCNGC 2 cut(s) 603, 606
PleI GAGTC 2 cut(s) 293, 533
PpsI GAGTC 2 cut(s) 293, 533
PpuMI RGGWCCY 1 cut(s) 548
Psp124BI GAGCTC 1 cut(s) 312
Psp5II RGGWCCY 1 cut(s) 548
PspN4I GGNNCC 2 cut(s) 273, 549
PspPI GGNCC 4 cut(s) 272, 521, 548, 615
PspPPI RGGWCCY 1 cut(s) 548
RsaI GTAC 1 cut(s) 677
RsaNI GTAC 1 cut(s) 676
RseI CAYNNNNRTG 1 cut(s) 595
SacI GAGCTC 1 cut(s) 312
SatI GCNGC 2 cut(s) 602, 605
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 4 cut(s) 272, 521, 548, 615
SchI GAGTC 2 cut(s) 294, 533
SduI GDGCHC 1 cut(s) 312
SfaNI GCATC 1 cut(s) 37
SfuI TTCGAA 1 cut(s) 886
SinI GGWCC 3 cut(s) 521, 548, 615
SmiMI CAYNNNNRTG 1 cut(s) 595
SmlI CTYRAG 4 cut(s) 25, 219, 311, 734
SmoI CTYRAG 4 cut(s) 25, 219, 311, 734
Sse9I AATT 7 cut(s) 124, 191, 336, 388, 634, 700, 836
SseBI AGGCCT 1 cut(s) 214
SsiI CCGC 1 cut(s) 867
SspMI CTAG 3 cut(s) 552, 786, 905
SstI GAGCTC 1 cut(s) 312
StuI AGGCCT 1 cut(s) 214
StyI CCWWGG 2 cut(s) 275, 543
TaaI ACNGT 2 cut(s) 767, 818
TaiI ACGT 1 cut(s) 158
TaqI TCGA 1 cut(s) 886
TasI AATT 7 cut(s) 124, 191, 336, 388, 634, 700, 836
TfiI GAWTC 3 cut(s) 291, 415, 513
TscAI CASTG 4 cut(s) 178, 208, 301, 358
TseFI GTSAC 4 cut(s) 130, 173, 478, 536
TseI GCWGC 2 cut(s) 601, 604
Tsp45I GTSAC 4 cut(s) 130, 173, 478, 536
TspDTI ATGAA 5 cut(s) 48, 125, 428, 788, 849
TspRI CASTG 4 cut(s) 178, 208, 301, 358
VpaK11BI GGWCC 3 cut(s) 521, 548, 615
XapI RAATTY 2 cut(s) 124, 191
XspI CTAG 3 cut(s) 552, 786, 905
ZraI GACGTC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.