Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008847

Physical Location & Seq

Genomic Coordinates Forward (+)

57732162 .. 57733291

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0416000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCTTCTGATTATGGAAAGGTGGAAGCCGATGTTGAACTCAAGGCTTCTGCTGCCAAGTTCCACGAGTTCTTCACCAGAAGACCACACCATCTGAGCAACATCAGCTCTGACAAAATTAAGGAGTGTAATCTTCATGAAGGTGAATGGGGAACTGTGGGTTCTATCATCCACTGGAACTATGTCCACGATGGCAAAACTAAAGTTGCCAAGGAGGTGTTTGAGGCCATAGACGACGAAAACAACTCGATCACTCTGAAAGTGGTGGAAGGAGACCTTCTGGAGCATTACAAGAGCTTCAAGGTCACCATTCAAGCCTCTCCAAAAGGTGAGGGCTGCACTGTGCACTGGACGTTTGAATATGAGAAGGTGCACGGCGATGTTGAAGACCCTCATACATTGCTCCAGTTGGTAGCTGATATCACCAAAGATATATCTTCTCACCTAAGCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

151

Amino Acids

17.05

Weight (kDa)

5.48

Isoelectric Point (pI)

23.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	6 - 150	1.4e-53	Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2	PF10604	7 - 130	5.3e-09	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03420 FvH4_3g03420
rosa_chinensis	RchiOBHm_Chr5g0005191 RchiOBHm_Chr5g0005201
rosa_laevigata	RLG00000031298 RLG00000031299
rosa_multiflora	Rmu_sc0026291.1_g000001 Rmu_sc0026292.1_g000001 Rmu_sc0038897.1_g000001 Rmu_sc0038898.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070470
rosa_rugosa	Rorug04G0415600 Rorug04G0415700 Rorug04G0415800 Rorug04G0415900 Rorug04G0416000
rosa_samantha	Rh5CG048600 Rh5CG048700 Rh5DG013100 Rh5DG043100
rosa_wichuraiana	Rw0G003570 Rw5G004200 Rw5G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	5 cut(s)	38, 301, 314, 359, 386
AluBI	AGCT	3 cut(s)	108, 297, 416
AluI	AGCT	3 cut(s)	108, 297, 416
Alw21I	GWGCWC	2 cut(s)	348, 375
Alw26I	GTCTC	1 cut(s)	267
Alw44I	GTGCAC	2 cut(s)	344, 371
AoxI	GGCC	1 cut(s)	225
ApaLI	GTGCAC	2 cut(s)	344, 371
ApeKI	GCWGC	2 cut(s)	53, 336
AsuHPI	GGTGA	6 cut(s)	67, 155, 298, 341, 415, 434
BaeGI	GKGCMC	2 cut(s)	348, 375
BauI	CACGAG	1 cut(s)	65
BbsI	GAAGAC	2 cut(s)	88, 393
Bbv12I	GWGCWC	2 cut(s)	348, 375
BbvI	GCAGC	2 cut(s)	40, 323
BccI	CCATC	2 cut(s)	99, 185
BceAI	ACGGC	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	267
BisI	GCNGC	2 cut(s)	54, 337
BlsI	GCNGC	2 cut(s)	55, 338
BpiI	GAAGAC	2 cut(s)	88, 393
BpmI	CTGGAG	2 cut(s)	302, 389
Bpu10I	CCTNAGC	1 cut(s)	446
BpuEI	CTTGAG	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	210
Bse1I	ACTGG	3 cut(s)	179, 353, 406
Bse3DI	GCAATG	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	168
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	3 cut(s)	179, 353, 406
BseSI	GKGCMC	2 cut(s)	348, 375
BseXI	GCAGC	2 cut(s)	40, 323
BsgI	GTGCAG	1 cut(s)	322
BshFI	GGCC	1 cut(s)	227
BsiHKAI	GWGCWC	2 cut(s)	348, 375
BsmAI	GTCTC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	227
Bso31I	GGTCTC	1 cut(s)	267
Bsp1286I	GDGCHC	2 cut(s)	348, 375
Bsp143I	GATC	1 cut(s)	249
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	87
BspHI	TCATGA	1 cut(s)	136
BspTNI	GGTCTC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	398
BsrI	ACTGG	3 cut(s)	179, 353, 406
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	249
BssSI	CACGAG	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	65
Bst4CI	ACNGT	2 cut(s)	157, 343
BstDEI	CTNAG	2 cut(s)	95, 446
BstEII	GGTNACC	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	168
BstKTI	GATC	1 cut(s)	252
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	1 cut(s)	249
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 105
BstPI	GGTNACC	1 cut(s)	304
BstSLI	GKGCMC	2 cut(s)	348, 375
BstV1I	GCAGC	2 cut(s)	40, 323
BstV2I	GAAGAC	2 cut(s)	88, 393
BsuRI	GGCC	1 cut(s)	227
BtgZI	GCGATG	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	168
BtsIMutI	CAGTG	3 cut(s)	172, 339, 346
CciI	TCATGA	1 cut(s)	136
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	8 cut(s)	29, 47, 108, 227, 297, 317, 336, 416
CviKI_1	RGCY	8 cut(s)	29, 47, 108, 227, 297, 317, 336, 416
DdeI	CTNAG	2 cut(s)	95, 446
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	267
Eco32I	GATATC	1 cut(s)	421
Eco91I	GGTNACC	1 cut(s)	304
EcoO65I	GGTNACC	1 cut(s)	304
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	140
FaiI	YATR	7 cut(s)	15, 138, 183, 230, 363, 396, 434
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	1 cut(s)	136
Fnu4HI	GCNGC	2 cut(s)	54, 337
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	2 cut(s)	54, 337
GluI	GCNGC	2 cut(s)	54, 337
GsuI	CTGGAG	2 cut(s)	302, 389
HaeIII	GGCC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	140
HphI	GGTGA	6 cut(s)	67, 155, 298, 341, 415, 434
Hpy166II	GTNNAC	3 cut(s)	187, 346, 373
Hpy188I	TCNGA	4 cut(s)	10, 96, 112, 258
Hpy188III	TCNNGA	2 cut(s)	137, 281
Hpy8I	GTNNAC	3 cut(s)	187, 346, 373
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	4 cut(s)	134, 263, 287, 361
HpyCH4III	ACNGT	2 cut(s)	157, 343
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	3 cut(s)	339, 346, 373
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 105
HpyF3I	CTNAG	2 cut(s)	95, 446
HpySE526I	ACGT	1 cut(s)	353
Hsp92II	CATG	1 cut(s)	140
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	2 cut(s)	283, 408
LpnPI	CCDG	5 cut(s)	91, 160, 266, 334, 419
Lsp1109I	GCAGC	2 cut(s)	40, 323
MaeII	ACGT	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	5 cut(s)	64, 93, 125, 398, 429
MhlI	GDGCHC	2 cut(s)	348, 375
MluCI	AATT	1 cut(s)	117
MnlI	CCTC	5 cut(s)	208, 217, 325, 328, 402
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	2 cut(s)	141, 378
MwoI	GCNNNNNNNGC	2 cut(s)	53, 105
NdeII	GATC	1 cut(s)	249
NlaIII	CATG	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	304
PagI	TCATGA	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	55, 338
PspEI	GGTNACC	1 cut(s)	304
RseI	CAYNNNNRTG	2 cut(s)	141, 378
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	2 cut(s)	54, 337
Sau3AI	GATC	1 cut(s)	249
SduI	GDGCHC	2 cut(s)	348, 375
SmiMI	CAYNNNNRTG	2 cut(s)	141, 378
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	157, 343
TaiI	ACGT	1 cut(s)	356
TaqI	TCGA	1 cut(s)	248
TasI	AATT	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	3 cut(s)	179, 346, 353
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	2 cut(s)	53, 336
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	125, 153
TspRI	CASTG	3 cut(s)	179, 346, 353
VneI	GTGCAC	2 cut(s)	344, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.