Rmu_sc0038897.1_g000001

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038897.1
OG0008847
Physical Location & Seq
Forward (+)
1 .. 979
979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038897.1_g000001.1.cds

Sequence Viewer

Length: 979 bp
ggtacaagaatattctccctctcactgtggtttgggtggccaacagaaacaaccctattattcctggttcttctccagcaactttatctctaggctcttcggggttttcgatttccactaatgagtctttgattgcgtggtctctgaatgtctctgtggtcttaaatagtcccatattgcagctctcggacaatggcaatctgatcttgggagatgaaagcgctgcagatgcagaggggtatgtgatttggcagagttttgatgacataacagacactttgttgccggaaatgaagcttggctggaatttggtcacaggtttaaaccggaatatgacatcatgggtgtcctccagtgacccctctaccggagaatttactttcagtctggaccgacctgatcaagcacctcagttggtggttaggaaaggatctgagaagctaaatagatgggggccttgggatggactcagattcagtggtagcgaggagcttcagcccaatccggtatggactccaattttcaatataagcagtgaagaggtctattacacatttcaagatatagacaaatctactttaacaaggtttgtgatgaatcaagatggctcggctgaatattttacttggagagcaagtaacaatcagtggggtggggtggtgacaattaaacagagcagttgtgatgggtatgggatttgtggtccttatggaagttgtgactccaaaggtcctagttgcgagtgtttgaaaggatttgctcccaagtcaccacaggaatggcagatactcacttggactggaggctgtgtgagaagatgggacttggattgtaagaatgctgatggatttgttagatacaagggattgaagttgccggataactcattcctgtttgcaaacaggagtttgagcctcaaggaatgtgaggcagagtgtttgaagaactgttcttgtatggcttatactaggattgatgt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

326

Amino Acids

36.15

Weight (kDa)

4.73

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 438
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 2 cut(s) 306, 373
AcuI CTGAAG 1 cut(s) 478
AfaI GTAC 1 cut(s) 4
AfeI AGCGCT 1 cut(s) 222
AfiI CCNNNNNNNGG 2 cut(s) 367, 463
AgsI TTSAA 5 cut(s) 525, 559, 750, 870, 942
AjnI CCWGG 1 cut(s) 63
AjuI GAANNNNNNNTTGG 2 cut(s) 281, 313
AluBI AGCT 4 cut(s) 183, 297, 441, 492
AluI AGCT 4 cut(s) 183, 297, 441, 492
Alw26I GTCTC 2 cut(s) 146, 156
AlwI GGATC 1 cut(s) 438
Aor51HI AGCGCT 1 cut(s) 222
AoxI GGCC 2 cut(s) 38, 454
ApeKI GCWGC 2 cut(s) 180, 223
ApoI RAATTY 2 cut(s) 306, 373
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 4 cut(s) 390, 454, 703, 730
AsuHPI GGTGA 2 cut(s) 672, 761
AvaII GGWCC 3 cut(s) 390, 703, 730
BalI TGGCCA 1 cut(s) 40
BbvI GCAGC 2 cut(s) 192, 210
BccI CCATC 6 cut(s) 443, 457, 598, 679, 812, 838
BciT130I CCWGG 1 cut(s) 65
BclI TGATCA 1 cut(s) 399
BcoDI GTCTC 2 cut(s) 146, 156
BfaI CTAG 3 cut(s) 91, 734, 968
BfmI CTRYAG 1 cut(s) 224
BfoI RGCGCY 1 cut(s) 224
BisI GCNGC 2 cut(s) 181, 224
BlsI GCNGC 2 cut(s) 182, 225
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 3 cut(s) 390, 703, 730
BmgT120I GGNCC 4 cut(s) 390, 454, 703, 730
BmiI GGNNCC 1 cut(s) 455
BmrFI CCNGG 1 cut(s) 65
BmsI GCATC 1 cut(s) 219
BpmI CTGGAG 3 cut(s) 59, 336, 821
BpuEI CTTGAG 1 cut(s) 901
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 457
BsaWI WCCGGW 3 cut(s) 326, 367, 504
BsaXI ACNNNNNCTCC 4 cut(s) 621, 651, 794, 824
Bsc4I CCNNNNNNNGG 2 cut(s) 367, 463
Bse1I ACTGG 2 cut(s) 353, 804
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 1 cut(s) 468
BseLI CCNNNNNNNGG 2 cut(s) 367, 463
BseMII CTCAG 3 cut(s) 424, 425, 483
BseNI ACTGG 2 cut(s) 353, 804
BseRI GAGGAG 1 cut(s) 502
BseXI GCAGC 2 cut(s) 192, 210
BshFI GGCC 2 cut(s) 40, 456
BsiSI CCGG 5 cut(s) 286, 327, 368, 505, 877
BslFI GGGAC 2 cut(s) 155, 835
BslI CCNNNNNNNGG 2 cut(s) 367, 463
BsmAI GTCTC 2 cut(s) 146, 156
BsmFI GGGAC 2 cut(s) 155, 835
BsmI GAATGC 1 cut(s) 843
BsnI GGCC 2 cut(s) 40, 456
Bso31I GGTCTC 1 cut(s) 146
Bsp143I GATC 3 cut(s) 203, 399, 430
BspANI GGCC 2 cut(s) 40, 456
BspCNI CTCAG 3 cut(s) 423, 426, 482
BspLI GGNNCC 1 cut(s) 455
BspMAI CTGCAG 1 cut(s) 228
BspPI GGATC 1 cut(s) 438
BspQI GCTCTTC 1 cut(s) 102
BspTNI GGTCTC 1 cut(s) 146
BsrI ACTGG 2 cut(s) 353, 804
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 3 cut(s) 203, 399, 430
BssT1I CCWWGG 1 cut(s) 457
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 2 cut(s) 27, 949
Bst6I CTCTTC 2 cut(s) 102, 533
BstDEI CTNAG 3 cut(s) 410, 434, 469
BstF5I GGATG 1 cut(s) 468
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 3 cut(s) 206, 402, 433
BstMAI GTCTC 2 cut(s) 146, 156
BstMBI GATC 3 cut(s) 203, 399, 430
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 63
BstSFI CTRYAG 1 cut(s) 224
BstV1I GCAGC 2 cut(s) 192, 210
BstX2I RGATCY 1 cut(s) 430
BstXI CCANNNNNNTGG 1 cut(s) 779
BstYI RGATCY 1 cut(s) 430
BsuRI GGCC 2 cut(s) 40, 456
BtsCI GGATG 1 cut(s) 468
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 5 cut(s) 23, 360, 483, 540, 652
CfoI GCGC 1 cut(s) 223
Cfr13I GGNCC 4 cut(s) 390, 454, 703, 730
Csp6I GTAC 1 cut(s) 3
CviAII CATG 1 cut(s) 341
CviQI GTAC 1 cut(s) 3
DdeI CTNAG 3 cut(s) 410, 434, 469
DpnI GATC 3 cut(s) 205, 401, 432
DpnII GATC 3 cut(s) 203, 399, 430
DraI TTTAAA 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 38
Eam1104I CTCTTC 2 cut(s) 102, 533
EarI CTCTTC 2 cut(s) 102, 533
Eco130I CCWWGG 1 cut(s) 457
Eco31I GGTCTC 1 cut(s) 146
Eco47I GGWCC 3 cut(s) 390, 703, 730
Eco47III AGCGCT 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 478
EcoO109I RGGNCCY 2 cut(s) 454, 730
EcoRII CCWGG 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 457
FaeI CATG 1 cut(s) 344
FaqI GGGAC 2 cut(s) 155, 835
FatI CATG 1 cut(s) 340
FbaI TGATCA 1 cut(s) 399
Fnu4HI GCNGC 2 cut(s) 181, 224
FokI GGATG 1 cut(s) 475
Fsp4HI GCNGC 2 cut(s) 181, 224
FspBI CTAG 3 cut(s) 91, 734, 968
GlaI GCGC 1 cut(s) 222
GluI GCNGC 2 cut(s) 181, 224
GsuI CTGGAG 3 cut(s) 59, 336, 821
HaeII RGCGCY 1 cut(s) 224
HaeIII GGCC 2 cut(s) 40, 456
HapII CCGG 5 cut(s) 286, 327, 368, 505, 877
HhaI GCGC 1 cut(s) 223
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HindIII AAGCTT 1 cut(s) 295
HinfI GANTC 6 cut(s) 124, 467, 473, 513, 597, 721
HpaII CCGG 5 cut(s) 286, 327, 368, 505, 877
HphI GGTGA 2 cut(s) 672, 761
Hpy188I TCNGA 5 cut(s) 146, 189, 203, 435, 472
Hpy188III TCNNGA 3 cut(s) 388, 559, 601
HpyCH4III ACNGT 2 cut(s) 27, 949
HpyCH4V TGCA 4 cut(s) 180, 226, 232, 898
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 3 cut(s) 410, 434, 469
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 1 cut(s) 221
Ksp22I TGATCA 1 cut(s) 399
Kzo9I GATC 3 cut(s) 203, 399, 430
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 2 cut(s) 489, 765
Lsp1109I GCAGC 2 cut(s) 192, 210
LweI GCATC 1 cut(s) 219
MaeI CTAG 3 cut(s) 91, 734, 968
MaeIII GTNAC 6 cut(s) 312, 355, 637, 660, 718, 767
MalI GATC 3 cut(s) 205, 401, 432
MboI GATC 3 cut(s) 203, 399, 430
MboII GAAGA 5 cut(s) 62, 89, 550, 827, 954
MflI RGATCY 1 cut(s) 430
MlsI TGGCCA 1 cut(s) 40
MluCI AATT 4 cut(s) 306, 373, 518, 665
MluNI TGGCCA 1 cut(s) 40
MlyI GAGTC 4 cut(s) 133, 461, 507, 715
Mox20I TGGCCA 1 cut(s) 40
MscI TGGCCA 1 cut(s) 40
MseI TTAA 4 cut(s) 163, 322, 580, 668
MslI CAYNNNNRTG 1 cut(s) 777
Msp20I TGGCCA 1 cut(s) 40
MspI CCGG 5 cut(s) 286, 327, 368, 505, 877
MspR9I CCNGG 1 cut(s) 65
MssI GTTTAAAC 1 cut(s) 323
Mva1269I GAATGC 1 cut(s) 843
MvaI CCWGG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 229
NdeII GATC 3 cut(s) 203, 399, 430
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 1 cut(s) 455
NmeAIII GCCGAG 1 cut(s) 589
NmuCI GTSAC 5 cut(s) 312, 355, 660, 718, 767
PciSI GCTCTTC 1 cut(s) 102
PcsI WCGNNNNNNNCGW 1 cut(s) 106
PctI GAATGC 1 cut(s) 843
PfeI GAWTC 2 cut(s) 473, 597
PkrI GCNGC 2 cut(s) 182, 225
PleI GAGTC 4 cut(s) 132, 461, 507, 715
PmeI GTTTAAAC 1 cut(s) 323
PpsI GAGTC 4 cut(s) 132, 461, 507, 715
PpuMI RGGWCCY 1 cut(s) 730
Psp5II RGGWCCY 1 cut(s) 730
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 455
PspPI GGNCC 4 cut(s) 390, 454, 703, 730
PspPPI RGGWCCY 1 cut(s) 730
PstI CTGCAG 1 cut(s) 228
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 1 cut(s) 4
RsaNI GTAC 1 cut(s) 3
RseI CAYNNNNRTG 1 cut(s) 777
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 4 cut(s) 163, 322, 580, 668
SatI GCNGC 2 cut(s) 181, 224
Sau3AI GATC 3 cut(s) 203, 399, 430
Sau96I GGNCC 4 cut(s) 390, 454, 703, 730
SchI GAGTC 4 cut(s) 133, 461, 507, 715
ScrFI CCNGG 1 cut(s) 65
SfaNI GCATC 1 cut(s) 219
SfcI CTRYAG 1 cut(s) 224
SinI GGWCC 3 cut(s) 390, 703, 730
SmiMI CAYNNNNRTG 1 cut(s) 777
SmlI CTYRAG 1 cut(s) 916
SmoI CTYRAG 1 cut(s) 916
Sse9I AATT 4 cut(s) 306, 373, 518, 665
SspI AATATT 2 cut(s) 12, 619
SspMI CTAG 3 cut(s) 91, 734, 968
StyD4I CCNGG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 457
TaaI ACNGT 2 cut(s) 27, 949
TaqI TCGA 1 cut(s) 109
TaqII GACCGA 1 cut(s) 407
TasI AATT 4 cut(s) 306, 373, 518, 665
TfiI GAWTC 2 cut(s) 473, 597
Tru1I TTAA 4 cut(s) 163, 322, 580, 668
Tru9I TTAA 4 cut(s) 163, 322, 580, 668
TscAI CASTG 5 cut(s) 30, 360, 483, 540, 652
TseFI GTSAC 5 cut(s) 312, 355, 660, 718, 767
TseI GCWGC 2 cut(s) 180, 223
Tsp45I GTSAC 5 cut(s) 312, 355, 660, 718, 767
TspDTI ATGAA 3 cut(s) 230, 307, 610
TspRI CASTG 5 cut(s) 30, 360, 483, 540, 652
VpaK11BI GGWCC 3 cut(s) 390, 703, 730
XapI RAATTY 2 cut(s) 306, 373
XspI CTAG 3 cut(s) 91, 734, 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.