divergent subfamily of APPLE domains
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g03420 FvH4_3g03420 |
| rosa_chinensis | RchiOBHm_Chr5g0005191 RchiOBHm_Chr5g0005201 |
| rosa_laevigata | RLG00000031298 RLG00000031299 |
| rosa_multiflora | Rmu_sc0026291.1_g000001 Rmu_sc0026292.1_g000001 Rmu_sc0038897.1_g000001 Rmu_sc0038898.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00070470 |
| rosa_rugosa | Rorug04G0415600 Rorug04G0415700 Rorug04G0415800 Rorug04G0415900 Rorug04G0416000 |
| rosa_samantha | Rh5CG048600 Rh5CG048700 Rh5DG013100 Rh5DG043100 |
| rosa_wichuraiana | Rw0G003570 Rw5G004200 Rw5G004210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 168 |
| AciI | CCGC | 2 cut(s) | 13, 105 |
| AcoI | YGGCCR | 1 cut(s) | 40 |
| AcsI | RAATTY | 1 cut(s) | 90 |
| AcvI | CACGTG | 3 cut(s) | 25, 76, 102 |
| AflIII | ACRYGT | 3 cut(s) | 24, 75, 99 |
| AgsI | TTSAA | 1 cut(s) | 88 |
| AjiI | CACGTC | 1 cut(s) | 57 |
| AoxI | GGCC | 1 cut(s) | 40 |
| ApoI | RAATTY | 1 cut(s) | 90 |
| AsuHPI | GGTGA | 1 cut(s) | 51 |
| BanII | GRGCYC | 1 cut(s) | 53 |
| BbrPI | CACGTG | 3 cut(s) | 25, 76, 102 |
| BceAI | ACGGC | 1 cut(s) | 55 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 48 |
| BmgBI | CACGTC | 1 cut(s) | 57 |
| BmiI | GGNNCC | 1 cut(s) | 52 |
| BsaAI | YACGTR | 3 cut(s) | 25, 76, 102 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 35, 65 |
| Bse3DI | GCAATG | 2 cut(s) | 151, 190 |
| BseGI | GGATG | 2 cut(s) | 128, 186 |
| BseMI | GCAATG | 2 cut(s) | 151, 190 |
| BshFI | GGCC | 1 cut(s) | 42 |
| BsnI | GGCC | 1 cut(s) | 42 |
| Bsp1286I | GDGCHC | 1 cut(s) | 53 |
| BspACI | CCGC | 2 cut(s) | 13, 105 |
| BspANI | GGCC | 1 cut(s) | 42 |
| BspLI | GGNNCC | 1 cut(s) | 52 |
| BsrDI | GCAATG | 2 cut(s) | 151, 190 |
| BstBAI | YACGTR | 3 cut(s) | 25, 76, 102 |
| BstC8I | GCNNGC | 1 cut(s) | 32 |
| BstEII | GGTNACC | 1 cut(s) | 16 |
| BstF5I | GGATG | 2 cut(s) | 128, 186 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 48, 102 |
| BstNSI | RCATGY | 1 cut(s) | 34 |
| BstPI | GGTNACC | 1 cut(s) | 16 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 80 |
| BsuRI | GGCC | 1 cut(s) | 42 |
| BtrI | CACGTC | 1 cut(s) | 57 |
| BtsCI | GGATG | 2 cut(s) | 128, 186 |
| BtsIMutI | CAGTG | 1 cut(s) | 239 |
| Cac8I | GCNNGC | 1 cut(s) | 32 |
| CviAII | CATG | 2 cut(s) | 31, 136 |
| CviJI | RGCY | 3 cut(s) | 42, 51, 84 |
| CviKI_1 | RGCY | 3 cut(s) | 42, 51, 84 |
| EaeI | YGGCCR | 1 cut(s) | 40 |
| Eco24I | GRGCYC | 1 cut(s) | 53 |
| Eco72I | CACGTG | 3 cut(s) | 25, 76, 102 |
| Eco91I | GGTNACC | 1 cut(s) | 16 |
| EcoO65I | GGTNACC | 1 cut(s) | 16 |
| EcoT38I | GRGCYC | 1 cut(s) | 53 |
| FaeI | CATG | 2 cut(s) | 34, 139 |
| FaiI | YATR | 7 cut(s) | 32, 81, 124, 126, 137, 160, 168 |
| FatI | CATG | 2 cut(s) | 30, 135 |
| FauI | CCCGC | 2 cut(s) | 6, 98 |
| FokI | GGATG | 2 cut(s) | 115, 173 |
| FriOI | GRGCYC | 1 cut(s) | 53 |
| HaeIII | GGCC | 1 cut(s) | 42 |
| Hin1II | CATG | 2 cut(s) | 34, 139 |
| HphI | GGTGA | 1 cut(s) | 51 |
| Hpy166II | GTNNAC | 2 cut(s) | 73, 214 |
| Hpy8I | GTNNAC | 2 cut(s) | 73, 214 |
| HpyCH4IV | ACGT | 4 cut(s) | 24, 56, 75, 101 |
| HpyCH4V | TGCA | 1 cut(s) | 30 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 48, 102 |
| HpySE526I | ACGT | 4 cut(s) | 24, 56, 75, 101 |
| Hsp92II | CATG | 2 cut(s) | 34, 139 |
| LmnI | GCTCC | 1 cut(s) | 56 |
| MaeII | ACGT | 4 cut(s) | 24, 56, 75, 101 |
| MaeIII | GTNAC | 3 cut(s) | 16, 57, 179 |
| MfeI | CAATTG | 1 cut(s) | 197 |
| MhlI | GDGCHC | 1 cut(s) | 53 |
| MluCI | AATT | 3 cut(s) | 90, 197, 221 |
| MslI | CAYNNNNRTG | 1 cut(s) | 78 |
| MunI | CAATTG | 1 cut(s) | 197 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 48, 102 |
| NlaIII | CATG | 2 cut(s) | 34, 139 |
| NlaIV | GGNNCC | 1 cut(s) | 52 |
| NmuCI | GTSAC | 2 cut(s) | 57, 179 |
| NspI | RCATGY | 1 cut(s) | 34 |
| PaeI | GCATGC | 1 cut(s) | 34 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 53 |
| PmaCI | CACGTG | 3 cut(s) | 25, 76, 102 |
| PmlI | CACGTG | 3 cut(s) | 25, 76, 102 |
| Ppu21I | YACGTR | 3 cut(s) | 25, 76, 102 |
| PsiI | TTATAA | 1 cut(s) | 168 |
| PspCI | CACGTG | 3 cut(s) | 25, 76, 102 |
| PspEI | GGTNACC | 1 cut(s) | 16 |
| PspN4I | GGNNCC | 1 cut(s) | 52 |
| RseI | CAYNNNNRTG | 1 cut(s) | 78 |
| SduI | GDGCHC | 1 cut(s) | 53 |
| SetI | ASST | 4 cut(s) | 27, 59, 78, 104 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 78 |
| SphI | GCATGC | 1 cut(s) | 34 |
| Sse9I | AATT | 3 cut(s) | 90, 197, 221 |
| SsiI | CCGC | 2 cut(s) | 13, 105 |
| TaiI | ACGT | 4 cut(s) | 27, 59, 78, 104 |
| TasI | AATT | 3 cut(s) | 90, 197, 221 |
| TscAI | CASTG | 1 cut(s) | 239 |
| TseFI | GTSAC | 2 cut(s) | 57, 179 |
| Tsp45I | GTSAC | 2 cut(s) | 57, 179 |
| TspDTI | ATGAA | 1 cut(s) | 175 |
| TspRI | CASTG | 1 cut(s) | 239 |
| XapI | RAATTY | 1 cut(s) | 90 |
| XceI | RCATGY | 1 cut(s) | 34 |