Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008847

Physical Location & Seq

Genomic Coordinates Forward (+)

91372121 .. 91373340

Gene Structure 1220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00070470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGGCTACCCTCTATTGCTAGCTTTCTGTTACATTTTGCTGTCTTCAAACTCACTAATTTCAATTGCAGTAGATACTTTGAGGGCAAACCAGGTCTTTACAACTGGTCAGACATTGGTATCTTCAGGCCAAAGATTTGAGCTTGGGTTCTTCAACCCAGGAACCTCAAAAATAGCTTCTTGGAATATTCTCCCTCTCACTGTGGTTTGGGTGGCCAATAGAAACAACCCTATTATTCCTGGTTCTTCTCCAGCAAGTTTATCTCTAGGCTCTTTGGGGTTTTCGATTTCCACTAATGAGTCTTTGATTGTGTGGTCTGTGAATGTCTCTGTGGTCTTAAATAGTCCCATATTGCAGCTCTTGGACAATGGCAATCTGATGTTGAGAGATGAAAGCGCTGCAGATGCAGAGGGGTATGTGATTTGGCAGAGTTTTGATTACATAACAGATACTTTGTTGCCGGAAATGAAGCTTGGATGGAATTTGGTCATAGGTTTAAACCGGAATATGACATCATGGGTGTCCTCCAGTGACCCCTCTACCGGAGAATTTACTTTCAGTCTGGACCGGCCTGATCAATCACCTCAGTTGGTGGTTAGGAAAGGGACTGAGAAGCTAAATAGATGGGGGCCTTGGGATGGAGTCAGATTCAGTGGTAGCGAGGAGCTTCAGCCCAATCCGGTATGGACTCCAATTTTCAATATAAGCAGTGAAGAGGTCTATTACACATTTCAAGATATAGACAAATCTACTTTAACAAGGTTTGTGATGAATCAAGATGGCTCGGCTGAATATTTTACTTGGAGAGCAAGTAACAATCAGTGGGGTGGGGTGGTGACACTTAAACAGAGCAGTTGTGATGGGTATGGGATTTGTGGTCCTTATGGAAGTTGTGACTCCAAAGGTCCTAGTTGCGAGTGTTTGAAAGGATTTGCTCCCAAGTCACCACAGGAATGGCAGATACTCACTTGGACTGGAGGCTGTGTGAGAAGATGGGACTTGGATTGTAAGAATGCAGATGGATTTGTTAGGTACAAGGGATTGAAGTTGCCGGATAACTCATTCCTGTTTGCAAACAGGAGTTTAAGCCTCGAGGAATGTGAGGCAGAGTGTTTGAAGAACTGTTCTTGTATGGCTTATACTAGGATTGATGTTCTTGCAAGAGGGGAGACTGTGTTATGTGGTTTGATGAATTGGTTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

401

Amino Acids

44.5

Weight (kDa)

4.8

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	67 - 173	3.1e-27	D-mannose binding lectin
S_locus_glycop	PF00954	208 - 315	5.6e-27	S-locus glycoprotein domain
PAN_2	PF08276	336 - 389	2.9e-12	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03420 FvH4_3g03420
rosa_chinensis	RchiOBHm_Chr5g0005191 RchiOBHm_Chr5g0005201
rosa_laevigata	RLG00000031298 RLG00000031299
rosa_multiflora	Rmu_sc0026291.1_g000001 Rmu_sc0026292.1_g000001 Rmu_sc0038897.1_g000001 Rmu_sc0038898.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070470
rosa_rugosa	Rorug04G0415600 Rorug04G0415700 Rorug04G0415800 Rorug04G0415900 Rorug04G0416000
rosa_samantha	Rh5CG048600 Rh5CG048700 Rh5DG013100 Rh5DG043100
rosa_wichuraiana	Rw0G003570 Rw5G004200 Rw5G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1091
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	2 cut(s)	481, 548
AcuI	CTGAAG	2 cut(s)	108, 653
AfaI	GTAC	1 cut(s)	1034
AfeI	AGCGCT	1 cut(s)	397
AfiI	CCNNNNNNNGG	2 cut(s)	542, 638
AgsI	TTSAA	8 cut(s)	48, 63, 154, 700, 734, 925, 1045, 1117
AjnI	CCWGG	3 cut(s)	90, 157, 238
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
AluBI	AGCT	7 cut(s)	23, 142, 176, 358, 472, 616, 667
AluI	AGCT	7 cut(s)	23, 142, 176, 358, 472, 616, 667
Alw26I	GTCTC	2 cut(s)	331, 1163
Ama87I	CYCGRG	1 cut(s)	1091
Aor51HI	AGCGCT	1 cut(s)	397
AoxI	GGCC	4 cut(s)	127, 213, 569, 629
ApeKI	GCWGC	2 cut(s)	355, 398
ApoI	RAATTY	2 cut(s)	481, 548
AspLEI	GCGC	1 cut(s)	398
AspS9I	GGNCC	4 cut(s)	565, 629, 878, 905
AsuHPI	GGTGA	3 cut(s)	573, 847, 936
AsuNHI	GCTAGC	1 cut(s)	19
AvaI	CYCGRG	1 cut(s)	1091
AvaII	GGWCC	3 cut(s)	565, 878, 905
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BalI	TGGCCA	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	367, 385
BccI	CCATC	7 cut(s)	471, 618, 632, 773, 854, 987, 1013
BciT130I	CCWGG	3 cut(s)	92, 159, 240
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	2 cut(s)	331, 1163
BfaI	CTAG	4 cut(s)	20, 266, 909, 1143
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	399
BisI	GCNGC	2 cut(s)	356, 399
BlsI	GCNGC	2 cut(s)	357, 400
Bme1390I	CCNGG	3 cut(s)	92, 159, 240
Bme18I	GGWCC	3 cut(s)	565, 878, 905
BmeT110I	CYCGRG	1 cut(s)	1091
BmgT120I	GGNCC	4 cut(s)	565, 629, 878, 905
BmiI	GGNNCC	2 cut(s)	163, 630
BmrFI	CCNGG	3 cut(s)	92, 159, 240
BmsI	GCATC	1 cut(s)	394
BmtI	GCTAGC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	36
BpmI	CTGGAG	3 cut(s)	234, 511, 996
BsaJI	CCNNGG	2 cut(s)	157, 632
BsaWI	WCCGGW	3 cut(s)	501, 542, 679
BsaXI	ACNNNNNCTCC	6 cut(s)	796, 826, 969, 999, 1160, 1190
Bsc4I	CCNNNNNNNGG	2 cut(s)	542, 638
Bse118I	RCCGGY	1 cut(s)	567
Bse1I	ACTGG	3 cut(s)	109, 528, 979
BseBI	CCWGG	3 cut(s)	92, 159, 240
BseDI	CCNNGG	2 cut(s)	157, 632
BseGI	GGATG	2 cut(s)	482, 643
BseLI	CCNNNNNNNGG	2 cut(s)	542, 638
BseMII	CTCAG	2 cut(s)	599, 600
BseNI	ACTGG	3 cut(s)	109, 528, 979
BseRI	GAGGAG	1 cut(s)	677
BseXI	GCAGC	2 cut(s)	367, 385
BshFI	GGCC	4 cut(s)	129, 215, 571, 631
BsiHKCI	CYCGRG	1 cut(s)	1091
BsiSI	CCGG	6 cut(s)	461, 502, 543, 568, 680, 1052
BslFI	GGGAC	3 cut(s)	330, 619, 1010
BslI	CCNNNNNNNGG	2 cut(s)	542, 638
BsmAI	GTCTC	2 cut(s)	331, 1163
BsmFI	GGGAC	3 cut(s)	330, 619, 1010
BsmI	GAATGC	1 cut(s)	1018
BsnI	GGCC	4 cut(s)	129, 215, 571, 631
BsoBI	CYCGRG	1 cut(s)	1091
Bsp143I	GATC	1 cut(s)	574
BspANI	GGCC	4 cut(s)	129, 215, 571, 631
BspCNI	CTCAG	2 cut(s)	598, 601
BspLI	GGNNCC	2 cut(s)	163, 630
BspMAI	CTGCAG	1 cut(s)	403
BspOI	GCTAGC	1 cut(s)	23
BsrFI	RCCGGY	1 cut(s)	567
BsrI	ACTGG	3 cut(s)	109, 528, 979
BssAI	RCCGGY	1 cut(s)	567
BssECI	CCNNGG	2 cut(s)	157, 632
BssMI	GATC	1 cut(s)	574
BssT1I	CCWWGG	1 cut(s)	632
Bst2UI	CCWGG	3 cut(s)	92, 159, 240
Bst4CI	ACNGT	3 cut(s)	202, 1124, 1174
Bst6I	CTCTTC	1 cut(s)	708
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	585, 609
BstF5I	GGATG	2 cut(s)	482, 643
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	398
BstKTI	GATC	1 cut(s)	577
BstMAI	GTCTC	2 cut(s)	331, 1163
BstMBI	GATC	1 cut(s)	574
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNI	CCWGG	3 cut(s)	92, 159, 240
BstSCI	CCNGG	3 cut(s)	90, 157, 238
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	367, 385
BstV2I	GAAGAC	1 cut(s)	36
BstXI	CCANNNNNNTGG	1 cut(s)	954
BsuRI	GGCC	4 cut(s)	129, 215, 571, 631
BtsCI	GGATG	2 cut(s)	482, 643
BtsI	GCAGTG	1 cut(s)	715
BtsIMutI	CAGTG	5 cut(s)	198, 535, 658, 715, 827
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	1 cut(s)	398
Cfr10I	RCCGGY	1 cut(s)	567
Cfr13I	GGNCC	4 cut(s)	565, 629, 878, 905
CsiI	ACCWGGT	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	1033
CviAII	CATG	1 cut(s)	516
CviQI	GTAC	1 cut(s)	1033
DdeI	CTNAG	2 cut(s)	585, 609
DpnI	GATC	1 cut(s)	576
DpnII	GATC	1 cut(s)	574
DraI	TTTAAA	1 cut(s)	498
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Eco130I	CCWWGG	1 cut(s)	632
Eco47I	GGWCC	3 cut(s)	565, 878, 905
Eco47III	AGCGCT	1 cut(s)	397
Eco57I	CTGAAG	2 cut(s)	108, 653
Eco88I	CYCGRG	1 cut(s)	1091
EcoO109I	RGGNCCY	2 cut(s)	629, 905
EcoRII	CCWGG	3 cut(s)	90, 157, 238
EcoT14I	CCWWGG	1 cut(s)	632
ErhI	CCWWGG	1 cut(s)	632
FaeI	CATG	1 cut(s)	519
FaqI	GGGAC	3 cut(s)	330, 619, 1010
FatI	CATG	1 cut(s)	515
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	2 cut(s)	356, 399
FokI	GGATG	2 cut(s)	489, 650
Fsp4HI	GCNGC	2 cut(s)	356, 399
FspBI	CTAG	4 cut(s)	20, 266, 909, 1143
GlaI	GCGC	1 cut(s)	397
GluI	GCNGC	2 cut(s)	356, 399
GsuI	CTGGAG	3 cut(s)	234, 511, 996
HaeII	RGCGCY	1 cut(s)	399
HaeIII	GGCC	4 cut(s)	129, 215, 571, 631
HapII	CCGG	6 cut(s)	461, 502, 543, 568, 680, 1052
HhaI	GCGC	1 cut(s)	398
Hin1II	CATG	1 cut(s)	519
Hin6I	GCGC	1 cut(s)	396
HinP1I	GCGC	1 cut(s)	396
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	6 cut(s)	299, 642, 648, 688, 772, 896
HpaII	CCGG	6 cut(s)	461, 502, 543, 568, 680, 1052
HphI	GGTGA	3 cut(s)	573, 847, 936
Hpy188I	TCNGA	3 cut(s)	111, 378, 647
Hpy188III	TCNNGA	3 cut(s)	563, 734, 776
HpyCH4III	ACNGT	3 cut(s)	202, 1124, 1174
HpyCH4V	TGCA	7 cut(s)	68, 355, 401, 407, 1016, 1073, 1160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	2 cut(s)	585, 609
Hsp92II	CATG	1 cut(s)	519
HspAI	GCGC	1 cut(s)	396
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	1 cut(s)	574
LmnI	GCTCC	2 cut(s)	664, 940
Lsp1109I	GCAGC	2 cut(s)	367, 385
LweI	GCATC	1 cut(s)	394
MabI	ACCWGGT	1 cut(s)	90
MaeI	CTAG	4 cut(s)	20, 266, 909, 1143
MaeIII	GTNAC	6 cut(s)	29, 530, 812, 835, 893, 942
MalI	GATC	1 cut(s)	576
MboI	GATC	1 cut(s)	574
MboII	GAAGA	7 cut(s)	36, 114, 142, 237, 725, 1002, 1129
MfeI	CAATTG	1 cut(s)	63
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	6 cut(s)	57, 63, 481, 548, 693, 1192
MluNI	TGGCCA	1 cut(s)	215
MlyI	GAGTC	4 cut(s)	308, 651, 682, 890
Mox20I	TGGCCA	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	5 cut(s)	338, 497, 755, 843, 1085
MslI	CAYNNNNRTG	1 cut(s)	952
Msp20I	TGGCCA	1 cut(s)	215
MspI	CCGG	6 cut(s)	461, 502, 543, 568, 680, 1052
MspR9I	CCNGG	3 cut(s)	92, 159, 240
MssI	GTTTAAAC	1 cut(s)	498
MunI	CAATTG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	1018
MvaI	CCWGG	3 cut(s)	92, 159, 240
MwoI	GCNNNNNNNGC	1 cut(s)	404
NdeII	GATC	1 cut(s)	574
NheI	GCTAGC	1 cut(s)	19
NlaIII	CATG	1 cut(s)	519
NlaIV	GGNNCC	2 cut(s)	163, 630
NmeAIII	GCCGAG	1 cut(s)	764
NmuCI	GTSAC	4 cut(s)	530, 835, 893, 942
PaeR7I	CTCGAG	1 cut(s)	1091
PctI	GAATGC	1 cut(s)	1018
PfeI	GAWTC	2 cut(s)	648, 772
PkrI	GCNGC	2 cut(s)	357, 400
PleI	GAGTC	4 cut(s)	307, 650, 682, 890
PmeI	GTTTAAAC	1 cut(s)	498
PpsI	GAGTC	4 cut(s)	307, 650, 682, 890
PpuMI	RGGWCCY	1 cut(s)	905
Psp5II	RGGWCCY	1 cut(s)	905
Psp6I	CCWGG	3 cut(s)	90, 157, 238
PspGI	CCWGG	3 cut(s)	90, 157, 238
PspN4I	GGNNCC	2 cut(s)	163, 630
PspPI	GGNCC	4 cut(s)	565, 629, 878, 905
PspPPI	RGGWCCY	1 cut(s)	905
PspXI	VCTCGAGB	1 cut(s)	1091
PstI	CTGCAG	1 cut(s)	403
RsaI	GTAC	1 cut(s)	1034
RsaNI	GTAC	1 cut(s)	1033
RseI	CAYNNNNRTG	1 cut(s)	952
SaqAI	TTAA	5 cut(s)	338, 497, 755, 843, 1085
SatI	GCNGC	2 cut(s)	356, 399
Sau3AI	GATC	1 cut(s)	574
Sau96I	GGNCC	4 cut(s)	565, 629, 878, 905
SchI	GAGTC	4 cut(s)	308, 651, 682, 890
ScrFI	CCNGG	3 cut(s)	92, 159, 240
SexAI	ACCWGGT	1 cut(s)	90
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	399
Sfr274I	CTCGAG	1 cut(s)	1091
SinI	GGWCC	3 cut(s)	565, 878, 905
SlaI	CTCGAG	1 cut(s)	1091
SmiMI	CAYNNNNRTG	1 cut(s)	952
SmlI	CTYRAG	1 cut(s)	1091
SmoI	CTYRAG	1 cut(s)	1091
Sse9I	AATT	6 cut(s)	57, 63, 481, 548, 693, 1192
SspI	AATATT	2 cut(s)	187, 794
SspMI	CTAG	4 cut(s)	20, 266, 909, 1143
StyD4I	CCNGG	3 cut(s)	90, 157, 238
StyI	CCWWGG	1 cut(s)	632
TaaI	ACNGT	3 cut(s)	202, 1124, 1174
TaqI	TCGA	2 cut(s)	284, 1092
TasI	AATT	6 cut(s)	57, 63, 481, 548, 693, 1192
TfiI	GAWTC	2 cut(s)	648, 772
Tru1I	TTAA	5 cut(s)	338, 497, 755, 843, 1085
Tru9I	TTAA	5 cut(s)	338, 497, 755, 843, 1085
TscAI	CASTG	5 cut(s)	205, 535, 658, 715, 827
TseFI	GTSAC	4 cut(s)	530, 835, 893, 942
TseI	GCWGC	2 cut(s)	355, 398
Tsp45I	GTSAC	4 cut(s)	530, 835, 893, 942
TspDTI	ATGAA	4 cut(s)	405, 482, 785, 1205
TspRI	CASTG	5 cut(s)	205, 535, 658, 715, 827
VpaK11BI	GGWCC	3 cut(s)	565, 878, 905
XapI	RAATTY	2 cut(s)	481, 548
XhoI	CTCGAG	1 cut(s)	1091
XspI	CTAG	4 cut(s)	20, 266, 909, 1143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.