divergent subfamily of APPLE domains
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g03420 FvH4_3g03420 |
| rosa_chinensis | RchiOBHm_Chr5g0005191 RchiOBHm_Chr5g0005201 |
| rosa_laevigata | RLG00000031298 RLG00000031299 |
| rosa_multiflora | Rmu_sc0026291.1_g000001 Rmu_sc0026292.1_g000001 Rmu_sc0038897.1_g000001 Rmu_sc0038898.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00070470 |
| rosa_rugosa | Rorug04G0415600 Rorug04G0415700 Rorug04G0415800 Rorug04G0415900 Rorug04G0416000 |
| rosa_samantha | Rh5CG048600 Rh5CG048700 Rh5DG013100 Rh5DG043100 |
| rosa_wichuraiana | Rw0G003570 Rw5G004200 Rw5G004210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 1231 |
| AcoI | YGGCCR | 1 cut(s) | 228 |
| AcsI | RAATTY | 2 cut(s) | 496, 563 |
| AcuI | CTGAAG | 2 cut(s) | 108, 668 |
| AcyI | GRCGYC | 1 cut(s) | 1467 |
| AdeI | CACNNNGTG | 1 cut(s) | 1349 |
| AfaI | GTAC | 1 cut(s) | 194 |
| AfeI | AGCGCT | 1 cut(s) | 412 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 557, 653, 1238 |
| AjnI | CCWGG | 4 cut(s) | 90, 157, 253, 1624 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 471, 503 |
| AluBI | AGCT | 7 cut(s) | 23, 142, 177, 373, 487, 631, 682 |
| AluI | AGCT | 7 cut(s) | 23, 142, 177, 373, 487, 631, 682 |
| Alw26I | GTCTC | 2 cut(s) | 346, 1179 |
| Aor13HI | TCCGGA | 1 cut(s) | 1231 |
| Aor51HI | AGCGCT | 1 cut(s) | 412 |
| AoxI | GGCC | 4 cut(s) | 127, 228, 584, 644 |
| ApeKI | GCWGC | 3 cut(s) | 370, 413, 1537 |
| ApoI | RAATTY | 2 cut(s) | 496, 563 |
| AseI | ATTAAT | 3 cut(s) | 56, 1386, 1580 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1644 |
| AspLEI | GCGC | 1 cut(s) | 413 |
| AspS9I | GGNCC | 4 cut(s) | 580, 644, 893, 920 |
| AsuHPI | GGTGA | 3 cut(s) | 862, 951, 1318 |
| AsuII | TTCGAA | 1 cut(s) | 1258 |
| AsuNHI | GCTAGC | 1 cut(s) | 19 |
| AvaII | GGWCC | 3 cut(s) | 580, 893, 920 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 102, 135 |
| BalI | TGGCCA | 1 cut(s) | 230 |
| BbsI | GAAGAC | 2 cut(s) | 36, 1406 |
| BbvI | GCAGC | 3 cut(s) | 382, 400, 1549 |
| BccI | CCATC | 8 cut(s) | 633, 647, 788, 869, 1002, 1028, 1540, 1712 |
| BciT130I | CCWGG | 4 cut(s) | 92, 159, 255, 1626 |
| BclI | TGATCA | 1 cut(s) | 589 |
| BcoDI | GTCTC | 2 cut(s) | 346, 1179 |
| BfaI | CTAG | 5 cut(s) | 20, 281, 924, 1158, 1277 |
| BfmI | CTRYAG | 1 cut(s) | 414 |
| BfoI | RGCGCY | 1 cut(s) | 414 |
| BisI | GCNGC | 3 cut(s) | 371, 414, 1538 |
| BlsI | GCNGC | 3 cut(s) | 372, 415, 1539 |
| Bme1390I | CCNGG | 4 cut(s) | 92, 159, 255, 1626 |
| Bme18I | GGWCC | 3 cut(s) | 580, 893, 920 |
| BmgT120I | GGNCC | 4 cut(s) | 580, 644, 893, 920 |
| BmiI | GGNNCC | 2 cut(s) | 163, 645 |
| BmrFI | CCNGG | 4 cut(s) | 92, 159, 255, 1626 |
| BmsI | GCATC | 5 cut(s) | 409, 1282, 1344, 1389, 1596 |
| BmtI | GCTAGC | 1 cut(s) | 23 |
| BpiI | GAAGAC | 2 cut(s) | 36, 1406 |
| BpmI | CTGGAG | 3 cut(s) | 249, 526, 1011 |
| Bpu14I | TTCGAA | 1 cut(s) | 1258 |
| BpuEI | CTTGAG | 2 cut(s) | 418, 1091 |
| BsaHI | GRCGYC | 1 cut(s) | 1467 |
| BsaJI | CCNNGG | 3 cut(s) | 157, 647, 1650 |
| BsaWI | WCCGGW | 4 cut(s) | 516, 557, 694, 1231 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 811, 841, 984, 1014, 1176, 1206 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 557, 653, 1238 |
| Bse118I | RCCGGY | 1 cut(s) | 582 |
| Bse1I | ACTGG | 3 cut(s) | 109, 543, 994 |
| Bse3DI | GCAATG | 2 cut(s) | 1284, 1451 |
| BseAI | TCCGGA | 1 cut(s) | 1231 |
| BseBI | CCWGG | 4 cut(s) | 92, 159, 255, 1626 |
| BseDI | CCNNGG | 3 cut(s) | 157, 647, 1650 |
| BseGI | GGATG | 5 cut(s) | 658, 1240, 1359, 1551, 1555 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 557, 653, 1238 |
| BseMI | GCAATG | 2 cut(s) | 1284, 1451 |
| BseMII | CTCAG | 3 cut(s) | 614, 615, 1360 |
| BseNI | ACTGG | 3 cut(s) | 109, 543, 994 |
| BseRI | GAGGAG | 2 cut(s) | 692, 1423 |
| BseXI | GCAGC | 3 cut(s) | 382, 400, 1549 |
| BsgI | GTGCAG | 1 cut(s) | 1556 |
| BshFI | GGCC | 4 cut(s) | 129, 230, 586, 646 |
| BsiSI | CCGG | 7 cut(s) | 476, 517, 558, 583, 695, 1067, 1232 |
| BslFI | GGGAC | 3 cut(s) | 345, 1025, 1256 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 557, 653, 1238 |
| BsmAI | GTCTC | 2 cut(s) | 346, 1179 |
| BsmFI | GGGAC | 3 cut(s) | 345, 1025, 1256 |
| BsmI | GAATGC | 1 cut(s) | 1033 |
| BsnI | GGCC | 4 cut(s) | 129, 230, 586, 646 |
| Bsp119I | TTCGAA | 1 cut(s) | 1258 |
| Bsp13I | TCCGGA | 1 cut(s) | 1231 |
| Bsp143I | GATC | 2 cut(s) | 393, 589 |
| Bsp19I | CCATGG | 1 cut(s) | 1650 |
| BspANI | GGCC | 4 cut(s) | 129, 230, 586, 646 |
| BspCNI | CTCAG | 3 cut(s) | 613, 616, 1359 |
| BspEI | TCCGGA | 1 cut(s) | 1231 |
| BspLI | GGNNCC | 2 cut(s) | 163, 645 |
| BspMAI | CTGCAG | 1 cut(s) | 418 |
| BspOI | GCTAGC | 1 cut(s) | 23 |
| BspQI | GCTCTTC | 1 cut(s) | 292 |
| BspT104I | TTCGAA | 1 cut(s) | 1258 |
| BsrDI | GCAATG | 2 cut(s) | 1284, 1451 |
| BsrFI | RCCGGY | 1 cut(s) | 582 |
| BsrI | ACTGG | 3 cut(s) | 109, 543, 994 |
| BssAI | RCCGGY | 1 cut(s) | 582 |
| BssECI | CCNNGG | 3 cut(s) | 157, 647, 1650 |
| BssMI | GATC | 2 cut(s) | 393, 589 |
| BssNI | GRCGYC | 1 cut(s) | 1467 |
| BssT1I | CCWWGG | 2 cut(s) | 647, 1650 |
| Bst2UI | CCWGG | 4 cut(s) | 92, 159, 255, 1626 |
| Bst4CI | ACNGT | 6 cut(s) | 217, 1139, 1190, 1573, 1705, 1725 |
| Bst6I | CTCTTC | 2 cut(s) | 292, 723 |
| BstACI | GRCGYC | 1 cut(s) | 1467 |
| BstBI | TTCGAA | 1 cut(s) | 1258 |
| BstC8I | GCNNGC | 1 cut(s) | 21 |
| BstDEI | CTNAG | 4 cut(s) | 600, 624, 1296, 1346 |
| BstDSI | CCRYGG | 1 cut(s) | 1650 |
| BstF5I | GGATG | 5 cut(s) | 658, 1240, 1359, 1551, 1555 |
| BstH2I | RGCGCY | 1 cut(s) | 414 |
| BstHHI | GCGC | 1 cut(s) | 413 |
| BstKTI | GATC | 2 cut(s) | 396, 592 |
| BstMAI | GTCTC | 2 cut(s) | 346, 1179 |
| BstMBI | GATC | 2 cut(s) | 393, 589 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 419 |
| BstNI | CCWGG | 4 cut(s) | 92, 159, 255, 1626 |
| BstNSI | RCATGY | 1 cut(s) | 434 |
| BstSCI | CCNGG | 4 cut(s) | 90, 157, 253, 1624 |
| BstSFI | CTRYAG | 1 cut(s) | 414 |
| BstV1I | GCAGC | 3 cut(s) | 382, 400, 1549 |
| BstV2I | GAAGAC | 2 cut(s) | 36, 1406 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 969 |
| BsuRI | GGCC | 4 cut(s) | 129, 230, 586, 646 |
| BtgI | CCRYGG | 1 cut(s) | 1650 |
| BtsCI | GGATG | 5 cut(s) | 658, 1240, 1359, 1551, 1555 |
| BtsI | GCAGTG | 1 cut(s) | 730 |
| BtsIMutI | CAGTG | 7 cut(s) | 213, 550, 580, 673, 730, 842, 1354 |
| Cac8I | GCNNGC | 1 cut(s) | 21 |
| CfoI | GCGC | 1 cut(s) | 413 |
| Cfr10I | RCCGGY | 1 cut(s) | 582 |
| Cfr13I | GGNCC | 4 cut(s) | 580, 644, 893, 920 |
| CseI | GACGC | 1 cut(s) | 1475 |
| CsiI | ACCWGGT | 2 cut(s) | 90, 1624 |
| Csp6I | GTAC | 1 cut(s) | 193 |
| CviAII | CATG | 5 cut(s) | 431, 531, 1336, 1425, 1651 |
| CviQI | GTAC | 1 cut(s) | 193 |
| DdeI | CTNAG | 4 cut(s) | 600, 624, 1296, 1346 |
| DpnI | GATC | 2 cut(s) | 395, 591 |
| DpnII | GATC | 2 cut(s) | 393, 589 |
| DraI | TTTAAA | 1 cut(s) | 513 |
| DraIII | CACNNNGTG | 1 cut(s) | 1349 |
| EaeI | YGGCCR | 1 cut(s) | 228 |
| Eam1104I | CTCTTC | 2 cut(s) | 292, 723 |
| EarI | CTCTTC | 2 cut(s) | 292, 723 |
| Eco130I | CCWWGG | 2 cut(s) | 647, 1650 |
| Eco47I | GGWCC | 3 cut(s) | 580, 893, 920 |
| Eco47III | AGCGCT | 1 cut(s) | 412 |
| Eco57I | CTGAAG | 2 cut(s) | 108, 668 |
| EcoO109I | RGGNCCY | 2 cut(s) | 644, 920 |
| EcoRII | CCWGG | 4 cut(s) | 90, 157, 253, 1624 |
| EcoT14I | CCWWGG | 2 cut(s) | 647, 1650 |
| ErhI | CCWWGG | 2 cut(s) | 647, 1650 |
| FaeI | CATG | 5 cut(s) | 434, 534, 1339, 1428, 1654 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1509, 1541 |
| FaqI | GGGAC | 3 cut(s) | 345, 1025, 1256 |
| FatI | CATG | 5 cut(s) | 430, 530, 1335, 1424, 1650 |
| FbaI | TGATCA | 1 cut(s) | 589 |
| Fnu4HI | GCNGC | 3 cut(s) | 371, 414, 1538 |
| FokI | GGATG | 5 cut(s) | 665, 1247, 1366, 1558, 1562 |
| Fsp4HI | GCNGC | 3 cut(s) | 371, 414, 1538 |
| FspBI | CTAG | 5 cut(s) | 20, 281, 924, 1158, 1277 |
| GlaI | GCGC | 1 cut(s) | 412 |
| GluI | GCNGC | 3 cut(s) | 371, 414, 1538 |
| GsuI | CTGGAG | 3 cut(s) | 249, 526, 1011 |
| HaeII | RGCGCY | 1 cut(s) | 414 |
| HaeIII | GGCC | 4 cut(s) | 129, 230, 586, 646 |
| HapII | CCGG | 7 cut(s) | 476, 517, 558, 583, 695, 1067, 1232 |
| HgaI | GACGC | 1 cut(s) | 1475 |
| HhaI | GCGC | 1 cut(s) | 413 |
| Hin1I | GRCGYC | 1 cut(s) | 1467 |
| Hin1II | CATG | 5 cut(s) | 434, 534, 1339, 1428, 1654 |
| Hin6I | GCGC | 1 cut(s) | 411 |
| HinP1I | GCGC | 1 cut(s) | 411 |
| HindIII | AAGCTT | 1 cut(s) | 485 |
| HinfI | GANTC | 8 cut(s) | 314, 657, 663, 703, 787, 911, 1280, 1429 |
| HpaII | CCGG | 7 cut(s) | 476, 517, 558, 583, 695, 1067, 1232 |
| HphI | GGTGA | 3 cut(s) | 862, 951, 1318 |
| Hpy166II | GTNNAC | 1 cut(s) | 580 |
| Hpy188I | TCNGA | 5 cut(s) | 111, 393, 625, 662, 1392 |
| Hpy188III | TCNNGA | 5 cut(s) | 397, 749, 791, 1232, 1715 |
| Hpy8I | GTNNAC | 1 cut(s) | 580 |
| HpyAV | CCTTC | 3 cut(s) | 1232, 1436, 1535 |
| HpyCH4III | ACNGT | 6 cut(s) | 217, 1139, 1190, 1573, 1705, 1725 |
| HpyCH4V | TGCA | 9 cut(s) | 68, 370, 416, 422, 1088, 1175, 1380, 1456, 1537 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 419 |
| HpyF3I | CTNAG | 4 cut(s) | 600, 624, 1296, 1346 |
| Hsp92I | GRCGYC | 1 cut(s) | 1467 |
| Hsp92II | CATG | 5 cut(s) | 434, 534, 1339, 1428, 1654 |
| HspAI | GCGC | 1 cut(s) | 411 |
| Kpn2I | TCCGGA | 1 cut(s) | 1231 |
| Ksp22I | TGATCA | 1 cut(s) | 589 |
| Kzo9I | GATC | 2 cut(s) | 393, 589 |
| LguI | GCTCTTC | 1 cut(s) | 292 |
| LmnI | GCTCC | 2 cut(s) | 679, 955 |
| Lsp1109I | GCAGC | 3 cut(s) | 382, 400, 1549 |
| LweI | GCATC | 5 cut(s) | 409, 1282, 1344, 1389, 1596 |
| MabI | ACCWGGT | 2 cut(s) | 90, 1624 |
| MaeI | CTAG | 5 cut(s) | 20, 281, 924, 1158, 1277 |
| MalI | GATC | 2 cut(s) | 395, 591 |
| MboI | GATC | 2 cut(s) | 393, 589 |
| MfeI | CAATTG | 1 cut(s) | 63 |
| MlsI | TGGCCA | 1 cut(s) | 230 |
| MluCI | AATT | 8 cut(s) | 57, 63, 496, 563, 708, 1208, 1597, 1710 |
| MluNI | TGGCCA | 1 cut(s) | 230 |
| MlyI | GAGTC | 5 cut(s) | 323, 666, 697, 905, 1289 |
| Mox20I | TGGCCA | 1 cut(s) | 230 |
| MroI | TCCGGA | 1 cut(s) | 1231 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1644 |
| MscI | TGGCCA | 1 cut(s) | 230 |
| MslI | CAYNNNNRTG | 2 cut(s) | 967, 1334 |
| Msp20I | TGGCCA | 1 cut(s) | 230 |
| MspI | CCGG | 7 cut(s) | 476, 517, 558, 583, 695, 1067, 1232 |
| MspR9I | CCNGG | 4 cut(s) | 92, 159, 255, 1626 |
| MssI | GTTTAAAC | 1 cut(s) | 513 |
| MunI | CAATTG | 1 cut(s) | 63 |
| Mva1269I | GAATGC | 1 cut(s) | 1033 |
| MvaI | CCWGG | 4 cut(s) | 92, 159, 255, 1626 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 419 |
| NcoI | CCATGG | 1 cut(s) | 1650 |
| NdeII | GATC | 2 cut(s) | 393, 589 |
| NheI | GCTAGC | 1 cut(s) | 19 |
| NlaIII | CATG | 5 cut(s) | 434, 534, 1339, 1428, 1654 |
| NlaIV | GGNNCC | 2 cut(s) | 163, 645 |
| NmeAIII | GCCGAG | 1 cut(s) | 779 |
| NmuCI | GTSAC | 8 cut(s) | 502, 545, 850, 908, 957, 1324, 1501, 1705 |
| NspI | RCATGY | 1 cut(s) | 434 |
| NspV | TTCGAA | 1 cut(s) | 1258 |
| PciSI | GCTCTTC | 1 cut(s) | 292 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 296 |
| PctI | GAATGC | 1 cut(s) | 1033 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1644 |
| PfeI | GAWTC | 3 cut(s) | 663, 787, 1429 |
| PkrI | GCNGC | 3 cut(s) | 372, 415, 1539 |
| PleI | GAGTC | 5 cut(s) | 322, 665, 697, 905, 1288 |
| PmeI | GTTTAAAC | 1 cut(s) | 513 |
| PpsI | GAGTC | 5 cut(s) | 322, 665, 697, 905, 1288 |
| PpuMI | RGGWCCY | 1 cut(s) | 920 |
| PshBI | ATTAAT | 3 cut(s) | 56, 1386, 1580 |
| Psp5II | RGGWCCY | 1 cut(s) | 920 |
| Psp6I | CCWGG | 4 cut(s) | 90, 157, 253, 1624 |
| PspGI | CCWGG | 4 cut(s) | 90, 157, 253, 1624 |
| PspN4I | GGNNCC | 2 cut(s) | 163, 645 |
| PspPI | GGNCC | 4 cut(s) | 580, 644, 893, 920 |
| PspPPI | RGGWCCY | 1 cut(s) | 920 |
| PstI | CTGCAG | 1 cut(s) | 418 |
| RsaI | GTAC | 1 cut(s) | 194 |
| RsaNI | GTAC | 1 cut(s) | 193 |
| RseI | CAYNNNNRTG | 2 cut(s) | 967, 1334 |
| SapI | GCTCTTC | 1 cut(s) | 292 |
| SatI | GCNGC | 3 cut(s) | 371, 414, 1538 |
| Sau3AI | GATC | 2 cut(s) | 393, 589 |
| Sau96I | GGNCC | 4 cut(s) | 580, 644, 893, 920 |
| SchI | GAGTC | 5 cut(s) | 323, 666, 697, 905, 1289 |
| ScrFI | CCNGG | 4 cut(s) | 92, 159, 255, 1626 |
| SexAI | ACCWGGT | 2 cut(s) | 90, 1624 |
| SfaNI | GCATC | 5 cut(s) | 409, 1282, 1344, 1389, 1596 |
| SfcI | CTRYAG | 1 cut(s) | 414 |
| SfuI | TTCGAA | 1 cut(s) | 1258 |
| SinI | GGWCC | 3 cut(s) | 580, 893, 920 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 967, 1334 |
| SmlI | CTYRAG | 2 cut(s) | 397, 1106 |
| SmoI | CTYRAG | 2 cut(s) | 397, 1106 |
| Sse9I | AATT | 8 cut(s) | 57, 63, 496, 563, 708, 1208, 1597, 1710 |
| SspI | AATATT | 2 cut(s) | 202, 809 |
| SspMI | CTAG | 5 cut(s) | 20, 281, 924, 1158, 1277 |
| StyD4I | CCNGG | 4 cut(s) | 90, 157, 253, 1624 |
| StyI | CCWWGG | 2 cut(s) | 647, 1650 |
| TaaI | ACNGT | 6 cut(s) | 217, 1139, 1190, 1573, 1705, 1725 |
| TaqI | TCGA | 2 cut(s) | 299, 1258 |
| TaqII | GACCGA | 1 cut(s) | 1573 |
| TasI | AATT | 8 cut(s) | 57, 63, 496, 563, 708, 1208, 1597, 1710 |
| TfiI | GAWTC | 3 cut(s) | 663, 787, 1429 |
| TscAI | CASTG | 7 cut(s) | 220, 550, 580, 673, 730, 842, 1354 |
| TseFI | GTSAC | 8 cut(s) | 502, 545, 850, 908, 957, 1324, 1501, 1705 |
| TseI | GCWGC | 3 cut(s) | 370, 413, 1537 |
| Tsp45I | GTSAC | 8 cut(s) | 502, 545, 850, 908, 957, 1324, 1501, 1705 |
| TspDTI | ATGAA | 8 cut(s) | 420, 497, 800, 1221, 1251, 1455, 1512, 1673 |
| TspGWI | ACGGA | 1 cut(s) | 1558 |
| TspRI | CASTG | 7 cut(s) | 220, 550, 580, 673, 730, 842, 1354 |
| VpaK11BI | GGWCC | 3 cut(s) | 580, 893, 920 |
| VspI | ATTAAT | 3 cut(s) | 56, 1386, 1580 |
| XapI | RAATTY | 2 cut(s) | 496, 563 |
| XceI | RCATGY | 1 cut(s) | 434 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1644 |
| XspI | CTAG | 5 cut(s) | 20, 281, 924, 1158, 1277 |