Rh5CG048700

divergent subfamily of APPLE domains

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
3423608 .. 3426640
3033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG048700.1

Sequence Viewer

Length: 1728 bp
ATGGGCTACCCTCTATTGCTAGCTTTCTGTTACATTTTGCTGTCTTCAAACTCATTAATTTCAATTGCAATAGATACTTTGAGGGCAAACCAGGTCTTTACAACTGGTCAGACATTGGTATCTTCAGGCCAAAGGTTTGAGCTTGGGTTTTTCAACCCAGGAACCTCAAAAAATAGCTTCTTGGGTGTTTGGTACAAGAATATTCTCCCTCTCACTGTGGTTTGGGTGGCCAACAGAAACAACCCTATTATTCCTGGTTCTTCTCCAGCAAGTTTATCTCTAGGCTCTTCGGGGTTTTCGATTTCCACTAATGAGTCTTTGATTGTGTGGTCTGTGAATGTCTCTGTGGTCTTAAATAGTCCCATATTGCAGCTCTTGGACAATGGCAATCTGATCTTGAGAAATGAAAGCGCTGCAGATGCAGAGGGGCATGTGATTTGGCAGAGTTTTGATTACTTAACAGATACTTTGTTGCCGGAAATGAAGCTTGGCTGGAATTTGGTCACAGGTTTAAACCGGAATATGACATCATGGGTGTCCTCCAGTGACCCCTCTACCGGAGAATTTACTTTCAGTGTGGACCGGCCTGATCAAGCACCTCAGTTGGTGGTTAGGAAAGGGTCTGAGAAGCTAAATAGATGGGGGCCTTGGGATGGAGTCAGATTCAGTGGTAGCGAGGAGCTTCAGCCCAATCCGGTATGGACTCCAATTTTCAATATAAGCAGTGAAGAGGTCTATTACACATTTCAAGATATAGACAAATCTACTTTAACAAGGTTTGTGATGAATCAAGATGGCTCGGCTGAATATTTTACTTGGAGAGCAAGTAACAATCAGTGGGGTGGGGTGGTGACACTTAAACAGAGCAGTTGTGATGGGTATGGGATTTGTGGTCCTTATGGAAGTTGTGACTCCAAAGGTCCTAGTTGCGAGTGTTTGAAAGGATTTGCTCCCAAGTCACCACAGGAATGGCAGATACTCACTTGGACTGGAGGCTGTGTGAGAAGATGGGACTTGGATTGTAAGAATGCTGATGGATTTGTTAGATACAAGGGATTGAAGTTGCCGGATAACTCATTCCTGTTTGCAAACAGGAGTTTGAGCCTCAAGGAATGTGAGGCAGAGTGTTTGAAGAACTGTTCTTGTATGGCTTATACTAGGATTGATGTTCTTGCAAGAGGGGGAGACTGTGTTATGTGGTTTGATGAATTGGTTGATATGAGAAACTATCCGGATGAAGGGGACGAGATTTATATTCGAATGGCAAGAAAAGAACTAGAGTCCATTGCTGATGCTAAGAAGAAAAAGCGAGTGAAAGTGGTTGTCACCATTGTCATGTCATCACTCAGTGGGATGCTTATTATTGGTGTTGTTGTCTGCATCATTAATCGGAATAGGAAGACAAAGAGGAGAGGTATTAAAGCATGGAATCTGTGGAATGAAGGAAATCCATTGCAACTGCTGGACGCCCATATAGAGAAATCTTCTTCTGTCAATGAAGTGACAAGATGTATTCAAGTAGCCCTTCTGTGTGTGCAGCAACGGATGGATGATAGACCGACTATGACAACTGTTTTATTAATGTTGTCTAATGAGAATTATTTGATGCCCCAACCGAAAGAACCTGGTTTTATTACTGAACTTCTTCCCATGGGAGATACATCATCAAGTGGAAAGTATCTTCATACTGCTAATGATTTAACTGTCACAATTCAAGATGGACGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

575

Amino Acids

64.19

Weight (kDa)

5.89

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 72 - 178 1.2e-28 D-mannose binding lectin
S_locus_glycop PF00954 213 - 320 1.1e-26 S-locus glycoprotein domain
PAN_2 PF08276 341 - 407 4.5e-18 PAN-like domain
DUF3403 PF11883 531 - 575 8.8e-08 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 1231
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 2 cut(s) 496, 563
AcuI CTGAAG 2 cut(s) 108, 668
AcyI GRCGYC 1 cut(s) 1467
AdeI CACNNNGTG 1 cut(s) 1349
AfaI GTAC 1 cut(s) 194
AfeI AGCGCT 1 cut(s) 412
AfiI CCNNNNNNNGG 3 cut(s) 557, 653, 1238
AjnI CCWGG 4 cut(s) 90, 157, 253, 1624
AjuI GAANNNNNNNTTGG 2 cut(s) 471, 503
AluBI AGCT 7 cut(s) 23, 142, 177, 373, 487, 631, 682
AluI AGCT 7 cut(s) 23, 142, 177, 373, 487, 631, 682
Alw26I GTCTC 2 cut(s) 346, 1179
Aor13HI TCCGGA 1 cut(s) 1231
Aor51HI AGCGCT 1 cut(s) 412
AoxI GGCC 4 cut(s) 127, 228, 584, 644
ApeKI GCWGC 3 cut(s) 370, 413, 1537
ApoI RAATTY 2 cut(s) 496, 563
AseI ATTAAT 3 cut(s) 56, 1386, 1580
Asp700I GAANNNNTTC 1 cut(s) 1644
AspLEI GCGC 1 cut(s) 413
AspS9I GGNCC 4 cut(s) 580, 644, 893, 920
AsuHPI GGTGA 3 cut(s) 862, 951, 1318
AsuII TTCGAA 1 cut(s) 1258
AsuNHI GCTAGC 1 cut(s) 19
AvaII GGWCC 3 cut(s) 580, 893, 920
BaeI ACNNNNGTAYC 2 cut(s) 102, 135
BalI TGGCCA 1 cut(s) 230
BbsI GAAGAC 2 cut(s) 36, 1406
BbvI GCAGC 3 cut(s) 382, 400, 1549
BccI CCATC 8 cut(s) 633, 647, 788, 869, 1002, 1028, 1540, 1712
BciT130I CCWGG 4 cut(s) 92, 159, 255, 1626
BclI TGATCA 1 cut(s) 589
BcoDI GTCTC 2 cut(s) 346, 1179
BfaI CTAG 5 cut(s) 20, 281, 924, 1158, 1277
BfmI CTRYAG 1 cut(s) 414
BfoI RGCGCY 1 cut(s) 414
BisI GCNGC 3 cut(s) 371, 414, 1538
BlsI GCNGC 3 cut(s) 372, 415, 1539
Bme1390I CCNGG 4 cut(s) 92, 159, 255, 1626
Bme18I GGWCC 3 cut(s) 580, 893, 920
BmgT120I GGNCC 4 cut(s) 580, 644, 893, 920
BmiI GGNNCC 2 cut(s) 163, 645
BmrFI CCNGG 4 cut(s) 92, 159, 255, 1626
BmsI GCATC 5 cut(s) 409, 1282, 1344, 1389, 1596
BmtI GCTAGC 1 cut(s) 23
BpiI GAAGAC 2 cut(s) 36, 1406
BpmI CTGGAG 3 cut(s) 249, 526, 1011
Bpu14I TTCGAA 1 cut(s) 1258
BpuEI CTTGAG 2 cut(s) 418, 1091
BsaHI GRCGYC 1 cut(s) 1467
BsaJI CCNNGG 3 cut(s) 157, 647, 1650
BsaWI WCCGGW 4 cut(s) 516, 557, 694, 1231
BsaXI ACNNNNNCTCC 6 cut(s) 811, 841, 984, 1014, 1176, 1206
Bsc4I CCNNNNNNNGG 3 cut(s) 557, 653, 1238
Bse118I RCCGGY 1 cut(s) 582
Bse1I ACTGG 3 cut(s) 109, 543, 994
Bse3DI GCAATG 2 cut(s) 1284, 1451
BseAI TCCGGA 1 cut(s) 1231
BseBI CCWGG 4 cut(s) 92, 159, 255, 1626
BseDI CCNNGG 3 cut(s) 157, 647, 1650
BseGI GGATG 5 cut(s) 658, 1240, 1359, 1551, 1555
BseLI CCNNNNNNNGG 3 cut(s) 557, 653, 1238
BseMI GCAATG 2 cut(s) 1284, 1451
BseMII CTCAG 3 cut(s) 614, 615, 1360
BseNI ACTGG 3 cut(s) 109, 543, 994
BseRI GAGGAG 2 cut(s) 692, 1423
BseXI GCAGC 3 cut(s) 382, 400, 1549
BsgI GTGCAG 1 cut(s) 1556
BshFI GGCC 4 cut(s) 129, 230, 586, 646
BsiSI CCGG 7 cut(s) 476, 517, 558, 583, 695, 1067, 1232
BslFI GGGAC 3 cut(s) 345, 1025, 1256
BslI CCNNNNNNNGG 3 cut(s) 557, 653, 1238
BsmAI GTCTC 2 cut(s) 346, 1179
BsmFI GGGAC 3 cut(s) 345, 1025, 1256
BsmI GAATGC 1 cut(s) 1033
BsnI GGCC 4 cut(s) 129, 230, 586, 646
Bsp119I TTCGAA 1 cut(s) 1258
Bsp13I TCCGGA 1 cut(s) 1231
Bsp143I GATC 2 cut(s) 393, 589
Bsp19I CCATGG 1 cut(s) 1650
BspANI GGCC 4 cut(s) 129, 230, 586, 646
BspCNI CTCAG 3 cut(s) 613, 616, 1359
BspEI TCCGGA 1 cut(s) 1231
BspLI GGNNCC 2 cut(s) 163, 645
BspMAI CTGCAG 1 cut(s) 418
BspOI GCTAGC 1 cut(s) 23
BspQI GCTCTTC 1 cut(s) 292
BspT104I TTCGAA 1 cut(s) 1258
BsrDI GCAATG 2 cut(s) 1284, 1451
BsrFI RCCGGY 1 cut(s) 582
BsrI ACTGG 3 cut(s) 109, 543, 994
BssAI RCCGGY 1 cut(s) 582
BssECI CCNNGG 3 cut(s) 157, 647, 1650
BssMI GATC 2 cut(s) 393, 589
BssNI GRCGYC 1 cut(s) 1467
BssT1I CCWWGG 2 cut(s) 647, 1650
Bst2UI CCWGG 4 cut(s) 92, 159, 255, 1626
Bst4CI ACNGT 6 cut(s) 217, 1139, 1190, 1573, 1705, 1725
Bst6I CTCTTC 2 cut(s) 292, 723
BstACI GRCGYC 1 cut(s) 1467
BstBI TTCGAA 1 cut(s) 1258
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 4 cut(s) 600, 624, 1296, 1346
BstDSI CCRYGG 1 cut(s) 1650
BstF5I GGATG 5 cut(s) 658, 1240, 1359, 1551, 1555
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 1 cut(s) 413
BstKTI GATC 2 cut(s) 396, 592
BstMAI GTCTC 2 cut(s) 346, 1179
BstMBI GATC 2 cut(s) 393, 589
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstNI CCWGG 4 cut(s) 92, 159, 255, 1626
BstNSI RCATGY 1 cut(s) 434
BstSCI CCNGG 4 cut(s) 90, 157, 253, 1624
BstSFI CTRYAG 1 cut(s) 414
BstV1I GCAGC 3 cut(s) 382, 400, 1549
BstV2I GAAGAC 2 cut(s) 36, 1406
BstXI CCANNNNNNTGG 1 cut(s) 969
BsuRI GGCC 4 cut(s) 129, 230, 586, 646
BtgI CCRYGG 1 cut(s) 1650
BtsCI GGATG 5 cut(s) 658, 1240, 1359, 1551, 1555
BtsI GCAGTG 1 cut(s) 730
BtsIMutI CAGTG 7 cut(s) 213, 550, 580, 673, 730, 842, 1354
Cac8I GCNNGC 1 cut(s) 21
CfoI GCGC 1 cut(s) 413
Cfr10I RCCGGY 1 cut(s) 582
Cfr13I GGNCC 4 cut(s) 580, 644, 893, 920
CseI GACGC 1 cut(s) 1475
CsiI ACCWGGT 2 cut(s) 90, 1624
Csp6I GTAC 1 cut(s) 193
CviAII CATG 5 cut(s) 431, 531, 1336, 1425, 1651
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 4 cut(s) 600, 624, 1296, 1346
DpnI GATC 2 cut(s) 395, 591
DpnII GATC 2 cut(s) 393, 589
DraI TTTAAA 1 cut(s) 513
DraIII CACNNNGTG 1 cut(s) 1349
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 2 cut(s) 292, 723
EarI CTCTTC 2 cut(s) 292, 723
Eco130I CCWWGG 2 cut(s) 647, 1650
Eco47I GGWCC 3 cut(s) 580, 893, 920
Eco47III AGCGCT 1 cut(s) 412
Eco57I CTGAAG 2 cut(s) 108, 668
EcoO109I RGGNCCY 2 cut(s) 644, 920
EcoRII CCWGG 4 cut(s) 90, 157, 253, 1624
EcoT14I CCWWGG 2 cut(s) 647, 1650
ErhI CCWWGG 2 cut(s) 647, 1650
FaeI CATG 5 cut(s) 434, 534, 1339, 1428, 1654
FalI AAGNNNNNCTT 2 cut(s) 1509, 1541
FaqI GGGAC 3 cut(s) 345, 1025, 1256
FatI CATG 5 cut(s) 430, 530, 1335, 1424, 1650
FbaI TGATCA 1 cut(s) 589
Fnu4HI GCNGC 3 cut(s) 371, 414, 1538
FokI GGATG 5 cut(s) 665, 1247, 1366, 1558, 1562
Fsp4HI GCNGC 3 cut(s) 371, 414, 1538
FspBI CTAG 5 cut(s) 20, 281, 924, 1158, 1277
GlaI GCGC 1 cut(s) 412
GluI GCNGC 3 cut(s) 371, 414, 1538
GsuI CTGGAG 3 cut(s) 249, 526, 1011
HaeII RGCGCY 1 cut(s) 414
HaeIII GGCC 4 cut(s) 129, 230, 586, 646
HapII CCGG 7 cut(s) 476, 517, 558, 583, 695, 1067, 1232
HgaI GACGC 1 cut(s) 1475
HhaI GCGC 1 cut(s) 413
Hin1I GRCGYC 1 cut(s) 1467
Hin1II CATG 5 cut(s) 434, 534, 1339, 1428, 1654
Hin6I GCGC 1 cut(s) 411
HinP1I GCGC 1 cut(s) 411
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 8 cut(s) 314, 657, 663, 703, 787, 911, 1280, 1429
HpaII CCGG 7 cut(s) 476, 517, 558, 583, 695, 1067, 1232
HphI GGTGA 3 cut(s) 862, 951, 1318
Hpy166II GTNNAC 1 cut(s) 580
Hpy188I TCNGA 5 cut(s) 111, 393, 625, 662, 1392
Hpy188III TCNNGA 5 cut(s) 397, 749, 791, 1232, 1715
Hpy8I GTNNAC 1 cut(s) 580
HpyAV CCTTC 3 cut(s) 1232, 1436, 1535
HpyCH4III ACNGT 6 cut(s) 217, 1139, 1190, 1573, 1705, 1725
HpyCH4V TGCA 9 cut(s) 68, 370, 416, 422, 1088, 1175, 1380, 1456, 1537
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 4 cut(s) 600, 624, 1296, 1346
Hsp92I GRCGYC 1 cut(s) 1467
Hsp92II CATG 5 cut(s) 434, 534, 1339, 1428, 1654
HspAI GCGC 1 cut(s) 411
Kpn2I TCCGGA 1 cut(s) 1231
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 2 cut(s) 393, 589
LguI GCTCTTC 1 cut(s) 292
LmnI GCTCC 2 cut(s) 679, 955
Lsp1109I GCAGC 3 cut(s) 382, 400, 1549
LweI GCATC 5 cut(s) 409, 1282, 1344, 1389, 1596
MabI ACCWGGT 2 cut(s) 90, 1624
MaeI CTAG 5 cut(s) 20, 281, 924, 1158, 1277
MalI GATC 2 cut(s) 395, 591
MboI GATC 2 cut(s) 393, 589
MfeI CAATTG 1 cut(s) 63
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 8 cut(s) 57, 63, 496, 563, 708, 1208, 1597, 1710
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 5 cut(s) 323, 666, 697, 905, 1289
Mox20I TGGCCA 1 cut(s) 230
MroI TCCGGA 1 cut(s) 1231
MroXI GAANNNNTTC 1 cut(s) 1644
MscI TGGCCA 1 cut(s) 230
MslI CAYNNNNRTG 2 cut(s) 967, 1334
Msp20I TGGCCA 1 cut(s) 230
MspI CCGG 7 cut(s) 476, 517, 558, 583, 695, 1067, 1232
MspR9I CCNGG 4 cut(s) 92, 159, 255, 1626
MssI GTTTAAAC 1 cut(s) 513
MunI CAATTG 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 1033
MvaI CCWGG 4 cut(s) 92, 159, 255, 1626
MwoI GCNNNNNNNGC 1 cut(s) 419
NcoI CCATGG 1 cut(s) 1650
NdeII GATC 2 cut(s) 393, 589
NheI GCTAGC 1 cut(s) 19
NlaIII CATG 5 cut(s) 434, 534, 1339, 1428, 1654
NlaIV GGNNCC 2 cut(s) 163, 645
NmeAIII GCCGAG 1 cut(s) 779
NmuCI GTSAC 8 cut(s) 502, 545, 850, 908, 957, 1324, 1501, 1705
NspI RCATGY 1 cut(s) 434
NspV TTCGAA 1 cut(s) 1258
PciSI GCTCTTC 1 cut(s) 292
PcsI WCGNNNNNNNCGW 1 cut(s) 296
PctI GAATGC 1 cut(s) 1033
PdmI GAANNNNTTC 1 cut(s) 1644
PfeI GAWTC 3 cut(s) 663, 787, 1429
PkrI GCNGC 3 cut(s) 372, 415, 1539
PleI GAGTC 5 cut(s) 322, 665, 697, 905, 1288
PmeI GTTTAAAC 1 cut(s) 513
PpsI GAGTC 5 cut(s) 322, 665, 697, 905, 1288
PpuMI RGGWCCY 1 cut(s) 920
PshBI ATTAAT 3 cut(s) 56, 1386, 1580
Psp5II RGGWCCY 1 cut(s) 920
Psp6I CCWGG 4 cut(s) 90, 157, 253, 1624
PspGI CCWGG 4 cut(s) 90, 157, 253, 1624
PspN4I GGNNCC 2 cut(s) 163, 645
PspPI GGNCC 4 cut(s) 580, 644, 893, 920
PspPPI RGGWCCY 1 cut(s) 920
PstI CTGCAG 1 cut(s) 418
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 2 cut(s) 967, 1334
SapI GCTCTTC 1 cut(s) 292
SatI GCNGC 3 cut(s) 371, 414, 1538
Sau3AI GATC 2 cut(s) 393, 589
Sau96I GGNCC 4 cut(s) 580, 644, 893, 920
SchI GAGTC 5 cut(s) 323, 666, 697, 905, 1289
ScrFI CCNGG 4 cut(s) 92, 159, 255, 1626
SexAI ACCWGGT 2 cut(s) 90, 1624
SfaNI GCATC 5 cut(s) 409, 1282, 1344, 1389, 1596
SfcI CTRYAG 1 cut(s) 414
SfuI TTCGAA 1 cut(s) 1258
SinI GGWCC 3 cut(s) 580, 893, 920
SmiMI CAYNNNNRTG 2 cut(s) 967, 1334
SmlI CTYRAG 2 cut(s) 397, 1106
SmoI CTYRAG 2 cut(s) 397, 1106
Sse9I AATT 8 cut(s) 57, 63, 496, 563, 708, 1208, 1597, 1710
SspI AATATT 2 cut(s) 202, 809
SspMI CTAG 5 cut(s) 20, 281, 924, 1158, 1277
StyD4I CCNGG 4 cut(s) 90, 157, 253, 1624
StyI CCWWGG 2 cut(s) 647, 1650
TaaI ACNGT 6 cut(s) 217, 1139, 1190, 1573, 1705, 1725
TaqI TCGA 2 cut(s) 299, 1258
TaqII GACCGA 1 cut(s) 1573
TasI AATT 8 cut(s) 57, 63, 496, 563, 708, 1208, 1597, 1710
TfiI GAWTC 3 cut(s) 663, 787, 1429
TscAI CASTG 7 cut(s) 220, 550, 580, 673, 730, 842, 1354
TseFI GTSAC 8 cut(s) 502, 545, 850, 908, 957, 1324, 1501, 1705
TseI GCWGC 3 cut(s) 370, 413, 1537
Tsp45I GTSAC 8 cut(s) 502, 545, 850, 908, 957, 1324, 1501, 1705
TspDTI ATGAA 8 cut(s) 420, 497, 800, 1221, 1251, 1455, 1512, 1673
TspGWI ACGGA 1 cut(s) 1558
TspRI CASTG 7 cut(s) 220, 550, 580, 673, 730, 842, 1354
VpaK11BI GGWCC 3 cut(s) 580, 893, 920
VspI ATTAAT 3 cut(s) 56, 1386, 1580
XapI RAATTY 2 cut(s) 496, 563
XceI RCATGY 1 cut(s) 434
XmnI GAANNNNTTC 1 cut(s) 1644
XspI CTAG 5 cut(s) 20, 281, 924, 1158, 1277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.