divergent subfamily of APPLE domains
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g03420 FvH4_3g03420 |
| rosa_chinensis | RchiOBHm_Chr5g0005191 RchiOBHm_Chr5g0005201 |
| rosa_laevigata | RLG00000031298 RLG00000031299 |
| rosa_multiflora | Rmu_sc0026291.1_g000001 Rmu_sc0026292.1_g000001 Rmu_sc0038897.1_g000001 Rmu_sc0038898.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00070470 |
| rosa_rugosa | Rorug04G0415600 Rorug04G0415700 Rorug04G0415800 Rorug04G0415900 Rorug04G0416000 |
| rosa_samantha | Rh5CG048600 Rh5CG048700 Rh5DG013100 Rh5DG043100 |
| rosa_wichuraiana | Rw0G003570 Rw5G004200 Rw5G004210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 94 |
| AciI | CCGC | 1 cut(s) | 102 |
| AdeI | CACNNNGTG | 1 cut(s) | 170 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 101 |
| AhlI | ACTAGT | 1 cut(s) | 139 |
| AleI | CACNNNNGTG | 1 cut(s) | 58 |
| AluBI | AGCT | 1 cut(s) | 245 |
| AluI | AGCT | 1 cut(s) | 245 |
| Aor13HI | TCCGGA | 1 cut(s) | 94 |
| AsuHPI | GGTGA | 1 cut(s) | 139 |
| AsuII | TTCGAA | 1 cut(s) | 121 |
| BbsI | GAAGAC | 1 cut(s) | 227 |
| BccI | CCATC | 1 cut(s) | 92 |
| BcuI | ACTAGT | 1 cut(s) | 139 |
| BfaI | CTAG | 2 cut(s) | 12, 140 |
| BmsI | GCATC | 2 cut(s) | 165, 210 |
| BpiI | GAAGAC | 1 cut(s) | 227 |
| Bpu14I | TTCGAA | 1 cut(s) | 121 |
| BsaWI | WCCGGW | 1 cut(s) | 94 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 101 |
| BseAI | TCCGGA | 1 cut(s) | 94 |
| BseGI | GGATG | 2 cut(s) | 103, 180 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 101 |
| BsiSI | CCGG | 1 cut(s) | 95 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 101 |
| Bsp119I | TTCGAA | 1 cut(s) | 121 |
| Bsp13I | TCCGGA | 1 cut(s) | 94 |
| BspACI | CCGC | 1 cut(s) | 102 |
| BspEI | TCCGGA | 1 cut(s) | 94 |
| BspT104I | TTCGAA | 1 cut(s) | 121 |
| Bst4CI | ACNGT | 1 cut(s) | 44 |
| Bst6I | CTCTTC | 2 cut(s) | 102, 221 |
| BstBI | TTCGAA | 1 cut(s) | 121 |
| BstDEI | CTNAG | 1 cut(s) | 167 |
| BstF5I | GGATG | 2 cut(s) | 103, 180 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 26, 35 |
| BstV2I | GAAGAC | 1 cut(s) | 227 |
| BtsCI | GGATG | 2 cut(s) | 103, 180 |
| CviAII | CATG | 2 cut(s) | 26, 157 |
| CviJI | RGCY | 2 cut(s) | 5, 245 |
| CviKI_1 | RGCY | 2 cut(s) | 5, 245 |
| DdeI | CTNAG | 1 cut(s) | 167 |
| DraIII | CACNNNGTG | 1 cut(s) | 170 |
| Eam1104I | CTCTTC | 2 cut(s) | 102, 221 |
| EarI | CTCTTC | 2 cut(s) | 102, 221 |
| FaeI | CATG | 2 cut(s) | 29, 160 |
| FaiI | YATR | 8 cut(s) | 9, 27, 50, 59, 83, 117, 158, 249 |
| FatI | CATG | 2 cut(s) | 25, 156 |
| FauI | CCCGC | 1 cut(s) | 95 |
| FokI | GGATG | 2 cut(s) | 110, 187 |
| FspBI | CTAG | 2 cut(s) | 12, 140 |
| HapII | CCGG | 1 cut(s) | 95 |
| Hin1II | CATG | 2 cut(s) | 29, 160 |
| HpaII | CCGG | 1 cut(s) | 95 |
| HphI | GGTGA | 1 cut(s) | 139 |
| Hpy188I | TCNGA | 1 cut(s) | 213 |
| Hpy188III | TCNNGA | 1 cut(s) | 95 |
| HpyCH4III | ACNGT | 1 cut(s) | 44 |
| HpyCH4V | TGCA | 2 cut(s) | 29, 201 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 26, 35 |
| HpyF3I | CTNAG | 1 cut(s) | 167 |
| Hsp92II | CATG | 2 cut(s) | 29, 160 |
| Kpn2I | TCCGGA | 1 cut(s) | 94 |
| LpnPI | CCDG | 1 cut(s) | 108 |
| LweI | GCATC | 2 cut(s) | 165, 210 |
| MaeI | CTAG | 2 cut(s) | 12, 140 |
| MaeIII | GTNAC | 2 cut(s) | 51, 145 |
| MboII | GAAGA | 3 cut(s) | 119, 232, 238 |
| MluCI | AATT | 1 cut(s) | 71 |
| MnlI | CCTC | 3 cut(s) | 26, 222, 227 |
| MroI | TCCGGA | 1 cut(s) | 94 |
| MseI | TTAA | 2 cut(s) | 207, 259 |
| MslI | CAYNNNNRTG | 2 cut(s) | 58, 155 |
| MspI | CCGG | 1 cut(s) | 95 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 26, 35 |
| NlaIII | CATG | 2 cut(s) | 29, 160 |
| NmuCI | GTSAC | 2 cut(s) | 51, 145 |
| NspV | TTCGAA | 1 cut(s) | 121 |
| OliI | CACNNNNGTG | 1 cut(s) | 58 |
| RseI | CAYNNNNRTG | 2 cut(s) | 58, 155 |
| SaqAI | TTAA | 2 cut(s) | 207, 259 |
| SetI | ASST | 2 cut(s) | 238, 247 |
| SfaNI | GCATC | 2 cut(s) | 165, 210 |
| SfuI | TTCGAA | 1 cut(s) | 121 |
| SgeI | CNNG | 8 cut(s) | 24, 38, 42, 107, 115, 141, 152, 169 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 58, 155 |
| SpeI | ACTAGT | 1 cut(s) | 139 |
| Sse9I | AATT | 1 cut(s) | 71 |
| SsiI | CCGC | 1 cut(s) | 102 |
| SspMI | CTAG | 2 cut(s) | 12, 140 |
| TaaI | ACNGT | 1 cut(s) | 44 |
| TaqI | TCGA | 1 cut(s) | 121 |
| TasI | AATT | 1 cut(s) | 71 |
| Tru1I | TTAA | 2 cut(s) | 207, 259 |
| Tru9I | TTAA | 2 cut(s) | 207, 259 |
| TseFI | GTSAC | 2 cut(s) | 51, 145 |
| Tsp45I | GTSAC | 2 cut(s) | 51, 145 |
| TspDTI | ATGAA | 2 cut(s) | 14, 84 |
| XspI | CTAG | 2 cut(s) | 12, 140 |