divergent subfamily of APPLE domains
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g03420 FvH4_3g03420 |
| rosa_chinensis | RchiOBHm_Chr5g0005191 RchiOBHm_Chr5g0005201 |
| rosa_laevigata | RLG00000031298 RLG00000031299 |
| rosa_multiflora | Rmu_sc0026291.1_g000001 Rmu_sc0026292.1_g000001 Rmu_sc0038897.1_g000001 Rmu_sc0038898.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00070470 |
| rosa_rugosa | Rorug04G0415600 Rorug04G0415700 Rorug04G0415800 Rorug04G0415900 Rorug04G0416000 |
| rosa_samantha | Rh5CG048600 Rh5CG048700 Rh5DG013100 Rh5DG043100 |
| rosa_wichuraiana | Rw0G003570 Rw5G004200 Rw5G004210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 132, 179 |
| AccI | GTMKAC | 1 cut(s) | 285 |
| AciI | CCGC | 2 cut(s) | 127, 330 |
| AclWI | GGATC | 1 cut(s) | 277 |
| AfaI | GTAC | 3 cut(s) | 86, 132, 401 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 451 |
| AgsI | TTSAA | 3 cut(s) | 29, 221, 256 |
| AjnI | CCWGG | 1 cut(s) | 402 |
| AluBI | AGCT | 3 cut(s) | 32, 339, 370 |
| AluI | AGCT | 3 cut(s) | 32, 339, 370 |
| Alw26I | GTCTC | 1 cut(s) | 206 |
| AlwI | GGATC | 1 cut(s) | 277 |
| AoxI | GGCC | 1 cut(s) | 300 |
| ApeKI | GCWGC | 2 cut(s) | 185, 336 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 69 |
| AspS9I | GGNCC | 1 cut(s) | 121 |
| AsuHPI | GGTGA | 1 cut(s) | 355 |
| AvaII | GGWCC | 1 cut(s) | 121 |
| BbvI | GCAGC | 2 cut(s) | 172, 348 |
| BccI | CCATC | 1 cut(s) | 260 |
| BceAI | ACGGC | 1 cut(s) | 333 |
| BciT130I | CCWGG | 1 cut(s) | 404 |
| BcoDI | GTCTC | 1 cut(s) | 206 |
| BfmI | CTRYAG | 2 cut(s) | 153, 186 |
| BfuAI | ACCTGC | 2 cut(s) | 132, 179 |
| BglII | AGATCT | 1 cut(s) | 99 |
| BisI | GCNGC | 2 cut(s) | 186, 337 |
| BlsI | GCNGC | 2 cut(s) | 187, 338 |
| Bme1390I | CCNGG | 1 cut(s) | 404 |
| Bme18I | GGWCC | 1 cut(s) | 121 |
| BmgT120I | GGNCC | 1 cut(s) | 121 |
| BmrFI | CCNGG | 1 cut(s) | 404 |
| BmsI | GCATC | 2 cut(s) | 220, 323 |
| BpuEI | CTTGAG | 1 cut(s) | 434 |
| BsaJI | CCNNGG | 2 cut(s) | 225, 303 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 451 |
| Bse1I | ACTGG | 1 cut(s) | 45 |
| BseBI | CCWGG | 1 cut(s) | 404 |
| BseDI | CCNNGG | 2 cut(s) | 225, 303 |
| BseGI | GGATG | 3 cut(s) | 235, 271, 338 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 451 |
| BseMII | CTCAG | 2 cut(s) | 24, 189 |
| BseNI | ACTGG | 1 cut(s) | 45 |
| BseXI | GCAGC | 2 cut(s) | 172, 348 |
| BshFI | GGCC | 1 cut(s) | 302 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 451 |
| BsmAI | GTCTC | 1 cut(s) | 206 |
| BsmBI | CGTCTC | 1 cut(s) | 206 |
| BsnI | GGCC | 1 cut(s) | 302 |
| Bsp143I | GATC | 3 cut(s) | 36, 99, 269 |
| Bsp19I | CCATGG | 1 cut(s) | 225 |
| BspACI | CCGC | 2 cut(s) | 127, 330 |
| BspANI | GGCC | 1 cut(s) | 302 |
| BspCNI | CTCAG | 2 cut(s) | 25, 190 |
| BspMAI | CTGCAG | 1 cut(s) | 190 |
| BspMI | ACCTGC | 2 cut(s) | 132, 179 |
| BspPI | GGATC | 1 cut(s) | 277 |
| BsrI | ACTGG | 1 cut(s) | 45 |
| BssECI | CCNNGG | 2 cut(s) | 225, 303 |
| BssMI | GATC | 3 cut(s) | 36, 99, 269 |
| BssT1I | CCWWGG | 1 cut(s) | 225 |
| Bst2UI | CCWGG | 1 cut(s) | 404 |
| Bst4CI | ACNGT | 4 cut(s) | 154, 217, 262, 307 |
| BstC8I | GCNNGC | 1 cut(s) | 328 |
| BstDEI | CTNAG | 2 cut(s) | 33, 198 |
| BstDSI | CCRYGG | 2 cut(s) | 225, 303 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 449 |
| BstF5I | GGATG | 3 cut(s) | 235, 271, 338 |
| BstKTI | GATC | 3 cut(s) | 39, 102, 272 |
| BstMAI | GTCTC | 1 cut(s) | 206 |
| BstMBI | GATC | 3 cut(s) | 36, 99, 269 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 11, 230, 336 |
| BstNI | CCWGG | 1 cut(s) | 404 |
| BstSCI | CCNGG | 1 cut(s) | 402 |
| BstSFI | CTRYAG | 2 cut(s) | 153, 186 |
| BstV1I | GCAGC | 2 cut(s) | 172, 348 |
| BstX2I | RGATCY | 1 cut(s) | 99 |
| BstYI | RGATCY | 1 cut(s) | 99 |
| BsuRI | GGCC | 1 cut(s) | 302 |
| BtgI | CCRYGG | 2 cut(s) | 225, 303 |
| BtsCI | GGATG | 3 cut(s) | 235, 271, 338 |
| BtsI | GCAGTG | 1 cut(s) | 176 |
| BtsIMutI | CAGTG | 2 cut(s) | 52, 176 |
| BveI | ACCTGC | 2 cut(s) | 132, 179 |
| Cac8I | GCNNGC | 1 cut(s) | 328 |
| Cfr13I | GGNCC | 1 cut(s) | 121 |
| Csp6I | GTAC | 3 cut(s) | 85, 131, 400 |
| CviAII | CATG | 2 cut(s) | 112, 226 |
| CviQI | GTAC | 3 cut(s) | 85, 131, 400 |
| DdeI | CTNAG | 2 cut(s) | 33, 198 |
| DpnI | GATC | 3 cut(s) | 38, 101, 271 |
| DpnII | GATC | 3 cut(s) | 36, 99, 269 |
| EciI | GGCGGA | 1 cut(s) | 345 |
| Eco130I | CCWWGG | 1 cut(s) | 225 |
| Eco47I | GGWCC | 1 cut(s) | 121 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 449 |
| EcoO109I | RGGNCCY | 1 cut(s) | 121 |
| EcoRII | CCWGG | 1 cut(s) | 402 |
| EcoT14I | CCWWGG | 1 cut(s) | 225 |
| ErhI | CCWWGG | 1 cut(s) | 225 |
| Esp3I | CGTCTC | 1 cut(s) | 206 |
| FaeI | CATG | 2 cut(s) | 115, 229 |
| FaiI | YATR | 4 cut(s) | 113, 227, 296, 356 |
| FatI | CATG | 2 cut(s) | 111, 225 |
| FauI | CCCGC | 1 cut(s) | 120 |
| FblI | GTMKAC | 1 cut(s) | 285 |
| Fnu4HI | GCNGC | 2 cut(s) | 186, 337 |
| FokI | GGATG | 3 cut(s) | 242, 278, 345 |
| Fsp4HI | GCNGC | 2 cut(s) | 186, 337 |
| GluI | GCNGC | 2 cut(s) | 186, 337 |
| HaeIII | GGCC | 1 cut(s) | 302 |
| Hin1II | CATG | 2 cut(s) | 115, 229 |
| HinfI | GANTC | 2 cut(s) | 380, 437 |
| HphI | GGTGA | 1 cut(s) | 355 |
| Hpy166II | GTNNAC | 2 cut(s) | 174, 286 |
| Hpy188I | TCNGA | 1 cut(s) | 199 |
| Hpy188III | TCNNGA | 2 cut(s) | 256, 277 |
| Hpy8I | GTNNAC | 2 cut(s) | 174, 286 |
| HpyAV | CCTTC | 3 cut(s) | 131, 292, 455 |
| HpyCH4III | ACNGT | 4 cut(s) | 154, 217, 262, 307 |
| HpyCH4IV | ACGT | 1 cut(s) | 180 |
| HpyCH4V | TGCA | 5 cut(s) | 22, 188, 206, 233, 336 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 11, 230, 336 |
| HpyF3I | CTNAG | 2 cut(s) | 33, 198 |
| HpySE526I | ACGT | 1 cut(s) | 180 |
| Hsp92II | CATG | 2 cut(s) | 115, 229 |
| Kzo9I | GATC | 3 cut(s) | 36, 99, 269 |
| LmnI | GCTCC | 1 cut(s) | 279 |
| LpnPI | CCDG | 9 cut(s) | 58, 120, 137, 174, 290, 296, 312, 389, 416 |
| Lsp1109I | GCAGC | 2 cut(s) | 172, 348 |
| LweI | GCATC | 2 cut(s) | 220, 323 |
| MaeII | ACGT | 1 cut(s) | 180 |
| MaeIII | GTNAC | 1 cut(s) | 313 |
| MalI | GATC | 3 cut(s) | 38, 101, 271 |
| MboI | GATC | 3 cut(s) | 36, 99, 269 |
| MflI | RGATCY | 1 cut(s) | 99 |
| MluCI | AATT | 1 cut(s) | 193 |
| MnlI | CCTC | 2 cut(s) | 370, 399 |
| MroXI | GAANNNNTTC | 1 cut(s) | 69 |
| MspR9I | CCNGG | 1 cut(s) | 404 |
| MvaI | CCWGG | 1 cut(s) | 404 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 11, 230, 336 |
| NcoI | CCATGG | 1 cut(s) | 225 |
| NdeII | GATC | 3 cut(s) | 36, 99, 269 |
| NlaIII | CATG | 2 cut(s) | 115, 229 |
| PdmI | GAANNNNTTC | 1 cut(s) | 69 |
| PfeI | GAWTC | 2 cut(s) | 380, 437 |
| PkrI | GCNGC | 2 cut(s) | 187, 338 |
| PpuMI | RGGWCCY | 1 cut(s) | 121 |
| Psp5II | RGGWCCY | 1 cut(s) | 121 |
| Psp6I | CCWGG | 1 cut(s) | 402 |
| PspGI | CCWGG | 1 cut(s) | 402 |
| PspPI | GGNCC | 1 cut(s) | 121 |
| PspPPI | RGGWCCY | 1 cut(s) | 121 |
| PstI | CTGCAG | 1 cut(s) | 190 |
| PsuI | RGATCY | 1 cut(s) | 99 |
| RsaI | GTAC | 3 cut(s) | 86, 132, 401 |
| RsaNI | GTAC | 3 cut(s) | 85, 131, 400 |
| SatI | GCNGC | 2 cut(s) | 186, 337 |
| Sau3AI | GATC | 3 cut(s) | 36, 99, 269 |
| Sau96I | GGNCC | 1 cut(s) | 121 |
| ScrFI | CCNGG | 1 cut(s) | 404 |
| SfaNI | GCATC | 2 cut(s) | 220, 323 |
| SfcI | CTRYAG | 2 cut(s) | 153, 186 |
| SinI | GGWCC | 1 cut(s) | 121 |
| SmlI | CTYRAG | 1 cut(s) | 449 |
| SmoI | CTYRAG | 1 cut(s) | 449 |
| Sse9I | AATT | 1 cut(s) | 193 |
| SsiI | CCGC | 2 cut(s) | 127, 330 |
| StyD4I | CCNGG | 1 cut(s) | 402 |
| StyI | CCWWGG | 1 cut(s) | 225 |
| TaaI | ACNGT | 4 cut(s) | 154, 217, 262, 307 |
| TaiI | ACGT | 1 cut(s) | 183 |
| TaqI | TCGA | 1 cut(s) | 135 |
| TaqII | GACCGA | 1 cut(s) | 151 |
| TasI | AATT | 1 cut(s) | 193 |
| TfiI | GAWTC | 2 cut(s) | 380, 437 |
| TscAI | CASTG | 2 cut(s) | 52, 176 |
| TseI | GCWGC | 2 cut(s) | 185, 336 |
| TspDTI | ATGAA | 1 cut(s) | 311 |
| TspRI | CASTG | 2 cut(s) | 52, 176 |
| VpaK11BI | GGWCC | 1 cut(s) | 121 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 449 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 400 |
| XmiI | GTMKAC | 1 cut(s) | 285 |
| XmnI | GAANNNNTTC | 1 cut(s) | 69 |