Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000029.1

Orthogroup ID

OG0005271

Physical Location & Seq

Genomic Coordinates Forward (+)

52084 .. 53575

Gene Structure 1492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggtcaagcttctaatactagcactagtaggatcatcatgtctttcggtcctttgtgctgcagaagattttgatttcttctactttgttcagcagtggccaggatcattctgtgatacacagaaaagttgctgctatccaaccacagggaagcctgcagcagattttgggattcatgggctctggccaaattacaaggatggttcatacccctcaaactgtgatccaaacaacccctttgatcaatctcaggtttcagatttaattagcagtatgcaagaagaatggccaacactagcatgccctagcagcagcgggattgcgttctggacacacgagtgggaaaaacatggaacctgctccgagtctgccattaaccaacatagttactttgcagcagctcttgacctcaagaagaaggccaacctcctacaagctcttcaaagtgcaggtattaaacccaacggcgagtcttataccctggcggacatcaagggggccctgaaagatggaatcgggtacactccatatatcgagtgcaacgttgatcagtccggcaacagccaactttaccaggtctacttgtgcgtggatactaatggctctgacctcattgattgcccagtttttccccatgggaaatgtggttcaagcatcgagtttcctaccttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004540 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009611 GO:0009718 GO:0009812 GO:0009813 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016070 GO:0016787 GO:0016788 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0042440 GO:0042594 GO:0043170 GO:0044237 GO:0044238 GO:0044464 GO:0046148 GO:0046283 GO:0046483 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:0090501 GO:0140098 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

224

Amino Acids

24.49

Weight (kDa)

4.59

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	24 - 207	1.5e-65	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02990
fragaria_vesca	FvH4_4g31291 FvH4_5g24800
malus_domestica	MD13G1071600.v1.1 MD16G1072300.v1.1 MD16G1072400.v1.1
prunus_persica	Prupe.1G275300_v2.0.a1
pyrus_communis	pycom13g06420 pycom16g06270
rosa_chinensis	RchiOBHm_Chr4g0439741 RchiOBHm_Chr7g0215091 RchiOBHm_Chr7g0215101
rosa_laevigata	RLG00000002691 RLG00000006240
rosa_multiflora	Rmu_sc0001239.1_g000001 Rmu_sc0010226.1_g000008 Rmu_ssc0000029.1_g000010
rosa_roxburghii	Rroxscaffold_5G00380680
rosa_rugosa	Rorug04G0321200 Rorug07G0150100
rosa_samantha	Rh4AG372200 Rh4BG384300 Rh4CG399000 Rh4DG378700 Rh7AG287100 Rh7BG278700 Rh7CG306800
rosa_wichuraiana	Rw4G031780 Rw7G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	365, 440
AccI	GTMKAC	1 cut(s)	579
AciI	CCGC	2 cut(s)	315, 485
AclI	AACGTT	1 cut(s)	543
AclWI	GGATC	3 cut(s)	40, 112, 218
AcoI	YGGCCR	3 cut(s)	98, 185, 287
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	443, 651
AhlI	ACTAGT	1 cut(s)	25
AjnI	CCWGG	3 cut(s)	100, 480, 573
AleI	CACNNNNGTG	1 cut(s)	337
AloI	GAACNNNNNNTCC	2 cut(s)	631, 663
AluBI	AGCT	3 cut(s)	10, 401, 437
AluI	AGCT	3 cut(s)	10, 401, 437
AlwI	GGATC	3 cut(s)	40, 112, 218
AoxI	GGCC	5 cut(s)	98, 185, 287, 420, 498
ApaI	GGGCCC	1 cut(s)	502
ApeKI	GCWGC	7 cut(s)	59, 132, 158, 309, 312, 395, 398
AspS9I	GGNCC	3 cut(s)	49, 498, 499
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	502
BalI	TGGCCA	3 cut(s)	100, 187, 289
BanII	GRGCYC	2 cut(s)	183, 502
BauI	CACGAG	1 cut(s)	335
BbvI	GCAGC	7 cut(s)	46, 119, 170, 321, 324, 407, 410
BccI	CCATC	2 cut(s)	194, 503
BceAI	ACGGC	1 cut(s)	481
BciT130I	CCWGG	3 cut(s)	102, 482, 575
BciVI	GTATCC	1 cut(s)	586
BclI	TGATCA	2 cut(s)	241, 547
BcuI	ACTAGT	1 cut(s)	25
BfaI	CTAG	5 cut(s)	20, 26, 296, 306, 673
BfmI	CTRYAG	2 cut(s)	60, 156
BfuAI	ACCTGC	2 cut(s)	365, 440
BfuI	GTATCC	1 cut(s)	586
BisI	GCNGC	7 cut(s)	60, 133, 159, 310, 313, 396, 399
BlsI	GCNGC	7 cut(s)	61, 134, 160, 311, 314, 397, 400
Bme1390I	CCNGG	3 cut(s)	102, 482, 575
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	3 cut(s)	49, 498, 499
BmiI	GGNNCC	3 cut(s)	355, 499, 500
BmrFI	CCNGG	3 cut(s)	102, 482, 575
BmrI	ACTGGG	1 cut(s)	617
BmsI	GCATC	1 cut(s)	663
BmuI	ACTGGG	1 cut(s)	617
BpuEI	CTTGAG	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	480, 634
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	623
BseBI	CCWGG	3 cut(s)	102, 482, 575
BseDI	CCNNGG	2 cut(s)	480, 634
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	1 cut(s)	623
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	7 cut(s)	46, 119, 170, 321, 324, 407, 410
BsgI	GTGCAG	1 cut(s)	468
BshFI	GGCC	5 cut(s)	100, 187, 289, 422, 500
BsiSI	CCGG	1 cut(s)	555
BslI	CCNNNNNNNGG	1 cut(s)	146
BsnI	GGCC	5 cut(s)	100, 187, 289, 422, 500
Bsp120I	GGGCCC	1 cut(s)	498
Bsp1286I	GDGCHC	2 cut(s)	183, 502
Bsp143I	GATC	5 cut(s)	32, 104, 223, 241, 547
Bsp19I	CCATGG	1 cut(s)	634
BspACI	CCGC	2 cut(s)	315, 485
BspANI	GGCC	5 cut(s)	100, 187, 289, 422, 500
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	3 cut(s)	355, 499, 500
BspMAI	CTGCAG	2 cut(s)	64, 160
BspMI	ACCTGC	2 cut(s)	365, 440
BspPI	GGATC	3 cut(s)	40, 112, 218
BspQI	GCTCTTC	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	623
BssECI	CCNNGG	2 cut(s)	480, 634
BssMI	GATC	5 cut(s)	32, 104, 223, 241, 547
BssSI	CACGAG	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	634
Bst2BI	CACGAG	1 cut(s)	335
Bst2UI	CCWGG	3 cut(s)	102, 482, 575
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	156, 301
BstDEI	CTNAG	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	5 cut(s)	35, 107, 226, 244, 550
BstMBI	GATC	5 cut(s)	32, 104, 223, 241, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstNI	CCWGG	3 cut(s)	102, 482, 575
BstNSI	RCATGY	1 cut(s)	303
BstSCI	CCNGG	3 cut(s)	100, 480, 573
BstSFI	CTRYAG	2 cut(s)	60, 156
BstSLI	GKGCMC	1 cut(s)	502
BstV1I	GCAGC	7 cut(s)	46, 119, 170, 321, 324, 407, 410
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	5 cut(s)	100, 187, 289, 422, 500
BtgI	CCRYGG	1 cut(s)	634
BtsCI	GGATG	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	101
BveI	ACCTGC	2 cut(s)	365, 440
Cac8I	GCNNGC	2 cut(s)	156, 301
Cfr13I	GGNCC	3 cut(s)	49, 498, 499
CsiI	ACCWGGT	1 cut(s)	573
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	5 cut(s)	39, 176, 300, 350, 635
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	5 cut(s)	34, 106, 225, 243, 549
DpnII	GATC	5 cut(s)	32, 104, 223, 241, 547
EaeI	YGGCCR	3 cut(s)	98, 185, 287
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
EciI	GGCGGA	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	634
Eco24I	GRGCYC	2 cut(s)	183, 502
Eco47I	GGWCC	1 cut(s)	49
EcoO109I	RGGNCCY	2 cut(s)	498, 499
EcoRII	CCWGG	3 cut(s)	100, 480, 573
EcoT14I	CCWWGG	1 cut(s)	634
EcoT38I	GRGCYC	2 cut(s)	183, 502
ErhI	CCWWGG	1 cut(s)	634
FaeI	CATG	5 cut(s)	42, 179, 303, 353, 638
FatI	CATG	5 cut(s)	38, 175, 299, 349, 634
FauI	CCCGC	1 cut(s)	308
FbaI	TGATCA	2 cut(s)	241, 547
FblI	GTMKAC	1 cut(s)	579
Fnu4HI	GCNGC	7 cut(s)	60, 133, 159, 310, 313, 396, 399
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	2 cut(s)	183, 502
Fsp4HI	GCNGC	7 cut(s)	60, 133, 159, 310, 313, 396, 399
FspBI	CTAG	5 cut(s)	20, 26, 296, 306, 673
GluI	GCNGC	7 cut(s)	60, 133, 159, 310, 313, 396, 399
HaeIII	GGCC	5 cut(s)	100, 187, 289, 422, 500
HapII	CCGG	1 cut(s)	555
Hin1II	CATG	5 cut(s)	42, 179, 303, 353, 638
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	4 cut(s)	172, 365, 470, 513
HpaII	CCGG	1 cut(s)	555
Hpy166II	GTNNAC	2 cut(s)	522, 580
Hpy188I	TCNGA	3 cut(s)	259, 364, 607
Hpy188III	TCNNGA	3 cut(s)	328, 404, 412
Hpy8I	GTNNAC	2 cut(s)	522, 580
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	6 cut(s)	62, 158, 277, 395, 449, 540
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	5 cut(s)	42, 179, 303, 353, 638
Ksp22I	TGATCA	2 cut(s)	241, 547
Kzo9I	GATC	5 cut(s)	32, 104, 223, 241, 547
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	1 cut(s)	365
Lsp1109I	GCAGC	7 cut(s)	46, 119, 170, 321, 324, 407, 410
LweI	GCATC	1 cut(s)	663
MabI	ACCWGGT	1 cut(s)	573
MaeI	CTAG	5 cut(s)	20, 26, 296, 306, 673
MaeII	ACGT	1 cut(s)	543
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	5 cut(s)	34, 106, 225, 243, 549
MboI	GATC	5 cut(s)	32, 104, 223, 241, 547
MboII	GAAGA	5 cut(s)	70, 77, 293, 427, 431
MhlI	GDGCHC	2 cut(s)	183, 502
MlsI	TGGCCA	3 cut(s)	100, 187, 289
MluCI	AATT	2 cut(s)	190, 264
MluNI	TGGCCA	3 cut(s)	100, 187, 289
MlyI	GAGTC	2 cut(s)	374, 479
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	4 cut(s)	223, 419, 437, 620
Mox20I	TGGCCA	3 cut(s)	100, 187, 289
MscI	TGGCCA	3 cut(s)	100, 187, 289
MseI	TTAA	3 cut(s)	263, 375, 456
MslI	CAYNNNNRTG	2 cut(s)	298, 337
Msp20I	TGGCCA	3 cut(s)	100, 187, 289
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	1 cut(s)	555
MspR9I	CCNGG	3 cut(s)	102, 482, 575
MvaI	CCWGG	3 cut(s)	102, 482, 575
MwoI	GCNNNNNNNGC	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	634
NdeII	GATC	5 cut(s)	32, 104, 223, 241, 547
NlaIII	CATG	5 cut(s)	42, 179, 303, 353, 638
NlaIV	GGNNCC	3 cut(s)	355, 499, 500
NspI	RCATGY	1 cut(s)	303
OliI	CACNNNNGTG	1 cut(s)	337
PaeI	GCATGC	1 cut(s)	303
PciSI	GCTCTTC	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PfeI	GAWTC	2 cut(s)	172, 513
PkrI	GCNGC	7 cut(s)	61, 134, 160, 311, 314, 397, 400
PleI	GAGTC	2 cut(s)	373, 478
PpsI	GAGTC	2 cut(s)	373, 478
Psp1406I	AACGTT	1 cut(s)	543
Psp6I	CCWGG	3 cut(s)	100, 480, 573
PspGI	CCWGG	3 cut(s)	100, 480, 573
PspN4I	GGNNCC	3 cut(s)	355, 499, 500
PspOMI	GGGCCC	1 cut(s)	498
PspPI	GGNCC	3 cut(s)	49, 498, 499
PstI	CTGCAG	2 cut(s)	64, 160
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
RseI	CAYNNNNRTG	2 cut(s)	298, 337
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	3 cut(s)	263, 375, 456
SatI	GCNGC	7 cut(s)	60, 133, 159, 310, 313, 396, 399
Sau3AI	GATC	5 cut(s)	32, 104, 223, 241, 547
Sau96I	GGNCC	3 cut(s)	49, 498, 499
SchI	GAGTC	2 cut(s)	374, 479
ScrFI	CCNGG	3 cut(s)	102, 482, 575
SduI	GDGCHC	2 cut(s)	183, 502
SexAI	ACCWGGT	1 cut(s)	573
SfaNI	GCATC	1 cut(s)	663
SfcI	CTRYAG	2 cut(s)	60, 156
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	2 cut(s)	298, 337
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SpeI	ACTAGT	1 cut(s)	25
SphI	GCATGC	1 cut(s)	303
Sse9I	AATT	2 cut(s)	190, 264
SsiI	CCGC	2 cut(s)	315, 485
SspMI	CTAG	5 cut(s)	20, 26, 296, 306, 673
StyD4I	CCNGG	3 cut(s)	100, 480, 573
StyI	CCWWGG	1 cut(s)	634
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	2 cut(s)	534, 657
TaqII	GACCGA	1 cut(s)	37
TasI	AATT	2 cut(s)	190, 264
TfiI	GAWTC	2 cut(s)	172, 513
Tru1I	TTAA	3 cut(s)	263, 375, 456
Tru9I	TTAA	3 cut(s)	263, 375, 456
TscAI	CASTG	1 cut(s)	101
TseI	GCWGC	7 cut(s)	59, 132, 158, 309, 312, 395, 398
TspDTI	ATGAA	2 cut(s)	164, 195
TspRI	CASTG	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	1 cut(s)	303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	579
XspI	CTAG	5 cut(s)	20, 26, 296, 306, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.