Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000064.1

Orthogroup ID

OG0003103

Physical Location & Seq

Genomic Coordinates Forward (+)

46217 .. 60200

Gene Structure 13984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3399 bp

atgactcgtctaagcctgcatgtcgacgtgggaattgaattgttagaggataagggccagcgagacaggggaactctctcggagtcgtcgaatgtttttgatattaccagaactaagcatgcttccatcgaccgtctccgccgttggaggcaagcggcacttgtgctaaatgcttctcgtcgattccggtataccttagacttgaaaaaggaggaagaaaaaaagcagacgttaaggaagattagagcacatgcacaagccatacgagctgcatttctttttaaggaatccgtaacacaggaaaatggaatttcgccaccaaaaccaagttctgctggtgaatttccaattggacaagaagaaatagcttcaatttcaagggatcataattttactactctgcagcaatatgggggggtcaaaggcctcggagaattattgaaaactagtttagaaaagggaattcctggaagtgatgatgatttactaaaacgaaaaactgcatatggatccaacacatatccccggaaaaaaccaaggagtttctggagatttctctgggaagcttgccaagatcttactcttatcattttgatggtagctgctgtggcttctttagcgctgggtataaaaacagagggtataaaggagggatggtatgatgggggcagcattgcttttgcagttctcctagtcattgttgtgacagccattagtgactacaaacaatctctgcagttccagaatctaaatgaggaaaagagaaatatacaaattgaggttatcagaggtggtagacgtgttgaggtttcaatttatgatcttgttgtaggtgatgttataccccttaacattggtgatcaggttcctgctgatggggttttaatcactggtcattcactttcaattgatgagtctagcatgactggcgagtccaagattgttcgcaaggactccaaagaaccatttctaatgtccggctgcaaagtagcagatggaaatggtataatgctggtaaccagtgttgggattaatactgaatggggattactcatggctagcatctcggaagacactggtgaagaaacacccttgcaggtgcgcttgaatggggttgctaccttcattggtgttgtgggactcaccgtagctctcctcgtcttatgtgtccttttggtcagatactttactggccatacaacaaatgcagatggaacttctcagtttgttgccggaaaaacaaaatttgggaaagccatagatggagccatcaaaattgtcactattgcagtcaccattgtagtggttgctgttcctgaaggcctccccttagctgttaccttaacgtacgtaggctttctgcatgtgaaacaatgggctcggccactactatatgcagtgataagactgatgactgtggtcgagtcttgtgcatgtttgaagaaagtcaatgactctgatggcaagccggacttgtcaccaaagatatcgtctttgattattgaaggcatagctcagaatacaactggcaatgtttatgtgcccgagactggtggtgatgtagaggttactggatcaccaacagagaaggcaattctgcagtgggcactcaagcttgggatgaattttgaagccaccaggtctcaatcttcaattcttcatgtgttcccgttcaactccgagaaaaaacgaggcggtgtagcagttaaattgattatgtttttcaggaaatctattgaggatatggctggtcgtagtttgcgttgtgttgctatagcatatttaccatatgaattggaaaatgttccaactggtgaacaacaattagctgattgggcaatgcctgcagatgaccttgttttacttgctattgttggtataaaggatccttgtcgaccaggagttgcagatgcagtgagactatgccaaaaggctggcgttaaggtacgcatggttactggagacaatgttcagactgcaaaggcaatagcattggaatgtggtatactgcgtactgattcagatcttagggagcatctaattgaagggaaagacttccgtgagctttctgatagggagagagaagaggttgctgagaaaatctcggtaatgggacgatcctctcctaatgataagcttctgcttgtgcaagcgctaaggagaaggggacatgttgttgctgttactggagatggcactaatgatgctcctgcactgcatgaggccgacattggtcttgctatgggtattcaaggtactgaggttgcgaaagagagttctgatatcattatcctggatgacaattttgcttcagttgtgaaggttgtcagatggggacgttctgtatatgcaaatattcagaaattcatccaattccaactcactgtcaatgttgctgcacttgttatcaatgtggtggcagcgatttcctctggtgaagtaccactaaatgctgttcagcttctgtgggtgaatcttataatggatactcttggagcactagcattggctactgagcctcctacgaatcatctgatggacagacctcctgttggtcgaagggaaccgttgataactaatataatgtggaggaacttattgattcaggctatctaccaaattattgtcctccttatccttaatttccgagggaaaagtattcttaatctggaacacgattctactgaccatgcagacaaagtgaagaacacactgatattcaatacatttgtcctttgtcaaattttcaatgaattcaatgccaggaagccagatgaattcaacatattcaaaggaattaccaaaaattatctctttatgggaataatcgcagtgacacttgtacttcagattctcattgtcgagtttctggggaagtttactacaacagtccggcttaactggaagcattggttgatttctgttgtcattgcttttatcagttggcctcttgctgttgttgggaagtttattccagtacctgaaactcctttccacaagtatttcactaggagtcctccctttaagtttatcgccggaatattccgtcggcgaagagagagagcagaggatgttagcagcatggaaggggaacaagttttacctgatgatgaatttagagtgcgtggtgctctgaagcggcggtgcttactgcatcctgacggcgctggccaggagcggaacatggacacgacaatgaagggaggcacttatgatgacgtcctggagcggaacatggacacgacaatgaagggaggcacttatgatgacgtcctggaggaaaacagtgacctacattttggtttgctgacgaaagctagcttatcatcaaaatcagttttcttccgcagagcacagagccgagatcctatctcctgtgttggaggacgcgggctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1132

Amino Acids

125.04

Weight (kDa)

8.36

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	31 - 73	4e-17	Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N	PF00690	137 - 205	4.7e-14	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	259 - 354	1.3e-20	P-type ATPase actuator domain
Cation_ATPase	PF13246	499 - 569	2.3e-07	P-type ATPase, cytoplasmic domain N
Cation_ATPase	PF13246	575 - 633	9.4e-07	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	620 - 743	4.4e-14	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	814 - 990	1.2e-45	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29900 AT4G29900 AT5G57110 AT5G57110 AT5G57110
fragaria_vesca	FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940 FvH4_4g06940
malus_domestica	MD13G1241000.v1.1 MD16G1245600.v1.1 MD16G1246100.v1.1
prunus_persica	Prupe.1G072600_v2.0.a1 Prupe.8G012900_v2.0.a1
pyrus_communis	pycom13g21220
rosa_chinensis	RchiOBHm_Chr4g0398891 RchiOBHm_Chr4g0398951
rosa_laevigata	RLG00000009307 RLG00000009309 RLG00000009365
rosa_multiflora	Rmu_sc0004094.1_g000033 Rmu_ssc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343340 Rroxscaffold_5G00343930 Rroxscaffold_5G00344000
rosa_rugosa	Rorug04G0013200
rosa_samantha	Rh4AG091100 Rh4CG093100 Rh4CG099100 Rh4CG099400
rosa_wichuraiana	Rw4G007100 Rw4G007130 Rw4G007500 Rw4G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2480
AarI	CACCTGC	1 cut(s)	1087
AasI	GACNNNNNNGTC	1 cut(s)	931
AatII	GACGTC	2 cut(s)	3222, 3273
Acc36I	ACCTGC	1 cut(s)	1087
AccBSI	CCGCTC	2 cut(s)	3178, 3229
AccI	GTMKAC	5 cut(s)	24, 191, 796, 1894, 2005
AccII	CGCG	1 cut(s)	3390
AciI	CCGC	9 cut(s)	139, 155, 1695, 3139, 3142, 3178, 3229, 3346, 3390
AclWI	GGATC	8 cut(s)	390, 504, 517, 1582, 1880, 1893, 2112, 3359
AcoI	YGGCCR	3 cut(s)	1192, 1382, 3169
AcuI	CTGAAG	4 cut(s)	1338, 2295, 2831, 3155
AcyI	GRCGYC	2 cut(s)	3219, 3270
AfaI	GTAC	7 cut(s)	1349, 1947, 2014, 2257, 2442, 2844, 2979
AfeI	AGCGCT	2 cut(s)	621, 2154
AfiI	CCNNNNNNNGG	4 cut(s)	875, 1026, 1550, 2552
AflIII	ACRYGT	2 cut(s)	799, 2170
AhlI	ACTAGT	1 cut(s)	446
AjiI	CACGTC	2 cut(s)	28, 800
AjnI	CCWGG	8 cut(s)	466, 1637, 1897, 2292, 2762, 3171, 3222, 3273
AjuI	GAANNNNNNNTTGG	4 cut(s)	313, 333, 345, 365
AloI	GAACNNNNNNTCC	2 cut(s)	1953, 1985
Alw21I	GWGCWC	4 cut(s)	250, 2500, 3133, 3355
Alw26I	GTCTC	6 cut(s)	57, 140, 1541, 1647, 1912, 1956
AlwI	GGATC	8 cut(s)	390, 504, 517, 1582, 1880, 1893, 2112, 3359
AlwNI	CAGNNNCTG	2 cut(s)	2464, 2981
Ama87I	CYCGRG	1 cut(s)	1544
Aor51HI	AGCGCT	2 cut(s)	621, 2154
AoxI	GGCC	8 cut(s)	55, 424, 1192, 1321, 1382, 2223, 2945, 3169
ApeKI	GCWGC	8 cut(s)	269, 403, 602, 669, 981, 2396, 2420, 3078
ArsI	GACNNNNNNTTYG	5 cut(s)	1475, 1507, 3281, 3313, 3378
AseI	ATTAAT	1 cut(s)	1032
Asp700I	GAANNNNTTC	3 cut(s)	966, 1803, 2054
AspLEI	GCGC	4 cut(s)	622, 1104, 2155, 3167
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	526
AsuNHI	GCTAGC	2 cut(s)	1058, 3317
AvaI	CYCGRG	1 cut(s)	1544
BaeGI	GKGCMC	2 cut(s)	1545, 1609
BaeI	ACNNNNGTAYC	2 cut(s)	2247, 2280
BalI	TGGCCA	2 cut(s)	1194, 3171
BamHI	GGATCC	2 cut(s)	509, 1885
BanII	GRGCYC	1 cut(s)	1381
BbsI	GAAGAC	1 cut(s)	1077
Bbv12I	GWGCWC	4 cut(s)	250, 2500, 3133, 3355
BbvI	GCAGC	8 cut(s)	256, 415, 589, 681, 968, 2383, 2432, 3090
BceAI	ACGGC	2 cut(s)	126, 3178
BcgI	CGANNNNNNTGC	2 cut(s)	1412, 1446
BciT130I	CCWGG	8 cut(s)	468, 1639, 1899, 2294, 2764, 3173, 3224, 3275
BciVI	GTATCC	1 cut(s)	2479
BclI	TGATCA	1 cut(s)	859
BcnI	CCSGG	1 cut(s)	526
BcoDI	GTCTC	6 cut(s)	57, 140, 1541, 1647, 1912, 1956
BcuI	ACTAGT	1 cut(s)	446
BfaI	CTAG	7 cut(s)	447, 692, 918, 1059, 2501, 3009, 3318
BfmI	CTRYAG	5 cut(s)	401, 734, 1598, 1773, 1845
BfoI	RGCGCY	3 cut(s)	623, 2156, 3168
BfuAI	ACCTGC	1 cut(s)	1087
BfuI	GTATCC	1 cut(s)	2479
BglII	AGATCT	2 cut(s)	574, 2023
Bme1390I	CCNGG	9 cut(s)	468, 526, 1639, 1899, 2294, 2764, 3173, 3224, 3275
BmeT110I	CYCGRG	1 cut(s)	1544
BmgBI	CACGTC	2 cut(s)	28, 800
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	5 cut(s)	511, 867, 1267, 1887, 2565
BmrFI	CCNGG	9 cut(s)	468, 526, 1639, 1899, 2294, 2764, 3173, 3224, 3275
BmsI	GCATC	5 cut(s)	1071, 1900, 2044, 2194, 3163
BmtI	GCTAGC	2 cut(s)	1062, 3321
BoxI	GACNNNNGTC	2 cut(s)	1418, 2232
BpiI	GAAGAC	1 cut(s)	1077
BplI	GAGNNNNNCTC	2 cut(s)	2087, 2119
BpmI	CTGGAG	5 cut(s)	568, 1980, 2208, 3245, 3296
Bpu10I	CCTNAGC	2 cut(s)	1330, 2156
BpuEI	CTTGAG	1 cut(s)	1595
BpuMI	CCSGG	1 cut(s)	526
BsaAI	YACGTR	1 cut(s)	1351
BsaBI	GATNNNNATC	1 cut(s)	2022
BsaHI	GRCGYC	2 cut(s)	3219, 3270
BsaI	GGTCTC	1 cut(s)	1647
BsaJI	CCNNGG	4 cut(s)	427, 524, 536, 2647
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	6 cut(s)	641, 671, 1953, 1983, 2503, 2533
Bsc4I	CCNNNNNNNGG	4 cut(s)	875, 1026, 1550, 2552
Bse3DI	GCAATG	4 cut(s)	672, 1537, 1845, 2928
Bse8I	GATNNNNATC	1 cut(s)	2022
BseBI	CCWGG	8 cut(s)	468, 1639, 1899, 2294, 2764, 3173, 3224, 3275
BseDI	CCNNGG	4 cut(s)	427, 524, 536, 2647
BseGI	GGATG	6 cut(s)	659, 1626, 2302, 2367, 3076, 3154
BseJI	GATNNNNATC	1 cut(s)	2022
BseLI	CCNNNNNNNGG	4 cut(s)	875, 1026, 1550, 2552
BseMI	GCAATG	4 cut(s)	672, 1537, 1845, 2928
BseMII	CTCAG	5 cut(s)	1235, 1529, 2085, 2250, 2505
BseRI	GAGGAG	1 cut(s)	1145
BseSI	GKGCMC	2 cut(s)	1545, 1609
BseXI	GCAGC	8 cut(s)	256, 415, 589, 681, 968, 2383, 2432, 3090
BseYI	CCCAGC	1 cut(s)	622
BsgI	GTGCAG	2 cut(s)	2196, 2382
Bsh1236I	CGCG	1 cut(s)	3390
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	8 cut(s)	57, 426, 1194, 1323, 1384, 2225, 2947, 3171
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	4 cut(s)	250, 2500, 3133, 3355
BsiHKCI	CYCGRG	1 cut(s)	1544
BsiSI	CCGG	7 cut(s)	187, 526, 978, 1233, 1469, 2893, 3036
BsiWI	CGTACG	1 cut(s)	1347
BslFI	GGGAC	4 cut(s)	1152, 2127, 2181, 2349
BslI	CCNNNNNNNGG	4 cut(s)	875, 1026, 1550, 2552
BsmAI	GTCTC	6 cut(s)	57, 140, 1541, 1647, 1912, 1956
BsmBI	CGTCTC	1 cut(s)	140
BsmFI	GGGAC	4 cut(s)	1152, 2127, 2181, 2349
BsnI	GGCC	8 cut(s)	57, 426, 1194, 1323, 1384, 2225, 2947, 3171
Bso31I	GGTCTC	1 cut(s)	1647
BsoBI	CYCGRG	1 cut(s)	1544
Bsp1286I	GDGCHC	7 cut(s)	250, 1381, 1545, 1609, 2500, 3133, 3355
BspACI	CCGC	9 cut(s)	139, 155, 1695, 3139, 3142, 3178, 3229, 3346, 3390
BspANI	GGCC	8 cut(s)	57, 426, 1194, 1323, 1384, 2225, 2947, 3171
BspCNI	CTCAG	5 cut(s)	1234, 1528, 2086, 2251, 2506
BspFNI	CGCG	1 cut(s)	3390
BspLI	GGNNCC	5 cut(s)	511, 867, 1267, 1887, 2565
BspMAI	CTGCAG	4 cut(s)	405, 738, 1602, 1849
BspMI	ACCTGC	1 cut(s)	1087
BspOI	GCTAGC	2 cut(s)	1062, 3321
BspPI	GGATC	8 cut(s)	390, 504, 517, 1582, 1880, 1893, 2112, 3359
BspTNI	GGTCTC	1 cut(s)	1647
BsrBI	CCGCTC	2 cut(s)	3178, 3229
BsrDI	GCAATG	4 cut(s)	672, 1537, 1845, 2928
BssECI	CCNNGG	4 cut(s)	427, 524, 536, 2647
BssNAI	GTATAC	2 cut(s)	192, 2006
BssNI	GRCGYC	2 cut(s)	3219, 3270
BssT1I	CCWWGG	1 cut(s)	536
Bst1107I	GTATAC	2 cut(s)	192, 2006
Bst2UI	CCWGG	8 cut(s)	468, 1639, 1899, 2294, 2764, 3173, 3224, 3275
Bst4CI	ACNGT	7 cut(s)	134, 1147, 1417, 2386, 2568, 2890, 3287
Bst6I	CTCTTC	2 cut(s)	2079, 3049
BstACI	GRCGYC	2 cut(s)	3219, 3270
BstAPI	GCANNNNNTGC	1 cut(s)	1844
BstBAI	YACGTR	1 cut(s)	1351
BstEII	GGTNACC	1 cut(s)	1015
BstF5I	GGATG	6 cut(s)	659, 1626, 2302, 2367, 3076, 3154
BstFNI	CGCG	1 cut(s)	3390
BstH2I	RGCGCY	3 cut(s)	623, 2156, 3168
BstHHI	GCGC	4 cut(s)	622, 1104, 2155, 3167
BstMAI	GTCTC	6 cut(s)	57, 140, 1541, 1647, 1912, 1956
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	6 cut(s)	266, 608, 617, 927, 1835, 1844
BstNI	CCWGG	8 cut(s)	468, 1639, 1899, 2294, 2764, 3173, 3224, 3275
BstNSI	RCATGY	6 cut(s)	23, 122, 254, 1367, 1437, 2174
BstPAI	GACNNNNGTC	2 cut(s)	1418, 2232
BstPI	GGTNACC	1 cut(s)	1015
BstSCI	CCNGG	9 cut(s)	466, 524, 1637, 1897, 2292, 2762, 3171, 3222, 3273
BstSFI	CTRYAG	5 cut(s)	401, 734, 1598, 1773, 1845
BstSLI	GKGCMC	2 cut(s)	1545, 1609
BstSNI	TACGTA	1 cut(s)	1351
BstUI	CGCG	1 cut(s)	3390
BstV1I	GCAGC	8 cut(s)	256, 415, 589, 681, 968, 2383, 2432, 3090
BstV2I	GAAGAC	1 cut(s)	1077
BstX2I	RGATCY	5 cut(s)	509, 574, 1885, 2023, 3364
BstXI	CCANNNNNNTGG	2 cut(s)	1303, 1934
BstYI	RGATCY	5 cut(s)	509, 574, 1885, 2023, 3364
BstZ17I	GTATAC	2 cut(s)	192, 2006
BsuI	GTATCC	1 cut(s)	2479
BsuRI	GGCC	8 cut(s)	57, 426, 1194, 1323, 1384, 2225, 2947, 3171
BtrI	CACGTC	2 cut(s)	28, 800
BtsCI	GGATG	6 cut(s)	659, 1626, 2302, 2367, 3076, 3154
BtsI	GCAGTG	5 cut(s)	1404, 1607, 1920, 2213, 2838
BveI	ACCTGC	1 cut(s)	1087
CaiI	CAGNNNCTG	2 cut(s)	2464, 2981
CfoI	GCGC	4 cut(s)	622, 1104, 2155, 3167
Cfr13I	GGNCC	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	1637
Csp6I	GTAC	7 cut(s)	1348, 1946, 2013, 2256, 2441, 2843, 2978
CviQI	GTAC	7 cut(s)	1348, 1946, 2013, 2256, 2441, 2843, 2978
DrdI	GACNNNNNNGTC	1 cut(s)	931
DseDI	GACNNNNNNGTC	1 cut(s)	931
EaeI	YGGCCR	3 cut(s)	1192, 1382, 3169
Eam1104I	CTCTTC	2 cut(s)	2079, 3049
EarI	CTCTTC	2 cut(s)	2079, 3049
EciI	GGCGGA	1 cut(s)	128
Eco105I	TACGTA	1 cut(s)	1351
Eco130I	CCWWGG	1 cut(s)	536
Eco147I	AGGCCT	2 cut(s)	426, 1323
Eco24I	GRGCYC	1 cut(s)	1381
Eco31I	GGTCTC	1 cut(s)	1647
Eco32I	GATATC	2 cut(s)	1488, 2284
Eco47III	AGCGCT	2 cut(s)	621, 2154
Eco57I	CTGAAG	4 cut(s)	1338, 2295, 2831, 3155
Eco88I	CYCGRG	1 cut(s)	1544
Eco91I	GGTNACC	1 cut(s)	1015
EcoO65I	GGTNACC	1 cut(s)	1015
EcoRI	GAATTC	3 cut(s)	462, 2753, 2777
EcoRII	CCWGG	8 cut(s)	466, 1637, 1897, 2292, 2762, 3171, 3222, 3273
EcoRV	GATATC	2 cut(s)	1488, 2284
EcoT14I	CCWWGG	1 cut(s)	536
EcoT38I	GRGCYC	1 cut(s)	1381
ErhI	CCWWGG	1 cut(s)	536
Esp3I	CGTCTC	1 cut(s)	140
FalI	AAGNNNNNCTT	4 cut(s)	144, 176, 1457, 1489
FaqI	GGGAC	4 cut(s)	1152, 2127, 2181, 2349
FauI	CCCGC	1 cut(s)	3383
FauNDI	CATATG	2 cut(s)	505, 1789
FbaI	TGATCA	1 cut(s)	859
FblI	GTMKAC	5 cut(s)	24, 191, 796, 1894, 2005
FokI	GGATG	6 cut(s)	666, 1633, 2309, 2354, 3083, 3141
FriOI	GRGCYC	1 cut(s)	1381
FspBI	CTAG	7 cut(s)	447, 692, 918, 1059, 2501, 3009, 3318
GlaI	GCGC	4 cut(s)	621, 1103, 2154, 3166
GsaI	CCCAGC	1 cut(s)	626
GsuI	CTGGAG	5 cut(s)	568, 1980, 2208, 3245, 3296
HaeII	RGCGCY	3 cut(s)	623, 2156, 3168
HaeIII	GGCC	8 cut(s)	57, 426, 1194, 1323, 1384, 2225, 2947, 3171
HapII	CCGG	7 cut(s)	187, 526, 978, 1233, 1469, 2893, 3036
HhaI	GCGC	4 cut(s)	622, 1104, 2155, 3167
Hin1I	GRCGYC	2 cut(s)	3219, 3270
Hin6I	GCGC	4 cut(s)	620, 1102, 2153, 3165
HinP1I	GCGC	4 cut(s)	620, 1102, 2153, 3165
HincII	GTYRAC	2 cut(s)	25, 1895
HindII	GTYRAC	2 cut(s)	25, 1895
HindIII	AAGCTT	3 cut(s)	564, 1613, 2135
HpaII	CCGG	7 cut(s)	187, 526, 978, 1233, 1469, 2893, 3036
Hpy166II	GTNNAC	7 cut(s)	25, 192, 797, 1817, 1895, 2006, 2880
Hpy188III	TCNNGA	6 cut(s)	547, 742, 1316, 1726, 2669, 3158
Hpy8I	GTNNAC	7 cut(s)	25, 192, 797, 1817, 1895, 2006, 2880
Hpy99I	CGWCG	4 cut(s)	29, 91, 183, 3051
HpyCH4III	ACNGT	7 cut(s)	134, 1147, 1417, 2386, 2568, 2890, 3287
HpyCH4IV	ACGT	8 cut(s)	27, 230, 799, 1346, 1350, 2338, 3219, 3270
HpyF10VI	GCNNNNNNNGC	6 cut(s)	266, 608, 617, 927, 1835, 1844
HpySE526I	ACGT	8 cut(s)	27, 230, 799, 1346, 1350, 2338, 3219, 3270
Hsp92I	GRCGYC	2 cut(s)	3219, 3270
HspAI	GCGC	4 cut(s)	620, 1102, 2153, 3165
Ksp22I	TGATCA	1 cut(s)	859
LmnI	GCTCC	6 cut(s)	1265, 2032, 2212, 2495, 3175, 3226
Lsp1109I	GCAGC	8 cut(s)	256, 415, 589, 681, 968, 2383, 2432, 3090
LweI	GCATC	5 cut(s)	1071, 1900, 2044, 2194, 3163
MabI	ACCWGGT	1 cut(s)	1637
MaeI	CTAG	7 cut(s)	447, 692, 918, 1059, 2501, 3009, 3318
MaeII	ACGT	8 cut(s)	27, 230, 799, 1346, 1350, 2338, 3219, 3270
MbiI	CCGCTC	2 cut(s)	3178, 3229
MfeI	CAATTG	2 cut(s)	348, 906
MflI	RGATCY	5 cut(s)	509, 574, 1885, 2023, 3364
MhlI	GDGCHC	7 cut(s)	250, 1381, 1545, 1609, 2500, 3133, 3355
MlsI	TGGCCA	2 cut(s)	1194, 3171
MluNI	TGGCCA	2 cut(s)	1194, 3171
MlyI	GAGTC	8 cut(s)	92, 923, 941, 947, 1134, 1433, 1448, 3022
MmeI	TCCRAC	5 cut(s)	125, 537, 1832, 2401, 3361
Mox20I	TGGCCA	2 cut(s)	1194, 3171
MroXI	GAANNNNTTC	3 cut(s)	966, 1803, 2054
MscI	TGGCCA	2 cut(s)	1194, 3171
MslI	CAYNNNNRTG	6 cut(s)	593, 701, 1301, 1996, 3194, 3245
Msp20I	TGGCCA	2 cut(s)	1194, 3171
MspI	CCGG	7 cut(s)	187, 526, 978, 1233, 1469, 2893, 3036
MspR9I	CCNGG	9 cut(s)	468, 526, 1639, 1899, 2294, 2764, 3173, 3224, 3275
MunI	CAATTG	2 cut(s)	348, 906
MvaI	CCWGG	8 cut(s)	468, 1639, 1899, 2294, 2764, 3173, 3224, 3275
MvnI	CGCG	1 cut(s)	3390
MwoI	GCNNNNNNNGC	6 cut(s)	266, 608, 617, 927, 1835, 1844
NciI	CCSGG	1 cut(s)	526
NdeI	CATATG	2 cut(s)	505, 1789
NheI	GCTAGC	2 cut(s)	1058, 3317
NlaIV	GGNNCC	5 cut(s)	511, 867, 1267, 1887, 2565
NmeAIII	GCCGAG	2 cut(s)	1360, 3386
NmuCI	GTSAC	7 cut(s)	703, 716, 1279, 1291, 1476, 2833, 3287
NspI	RCATGY	6 cut(s)	23, 122, 254, 1367, 1437, 2174
PaeI	GCATGC	1 cut(s)	122
PaqCI	CACCTGC	1 cut(s)	1087
PceI	AGGCCT	2 cut(s)	426, 1323
PciI	ACATGT	1 cut(s)	2170
PcsI	WCGNNNNNNNCGW	2 cut(s)	86, 1759
PdmI	GAANNNNTTC	3 cut(s)	966, 1803, 2054
PfeI	GAWTC	9 cut(s)	183, 287, 745, 2018, 2473, 2527, 2602, 2678, 2851
Pfl23II	CGTACG	1 cut(s)	1347
PfoI	TCCNGGA	4 cut(s)	466, 2292, 3222, 3273
PleI	GAGTC	8 cut(s)	91, 922, 940, 947, 1134, 1432, 1448, 3021
PpsI	GAGTC	8 cut(s)	91, 922, 940, 947, 1134, 1432, 1448, 3021
Ppu21I	YACGTR	1 cut(s)	1351
PscI	ACATGT	1 cut(s)	2170
PshAI	GACNNNNGTC	2 cut(s)	1418, 2232
PshBI	ATTAAT	1 cut(s)	1032
PsiI	TTATAA	1 cut(s)	2480
Psp6I	CCWGG	8 cut(s)	466, 1637, 1897, 2292, 2762, 3171, 3222, 3273
PspEI	GGTNACC	1 cut(s)	1015
PspFI	CCCAGC	1 cut(s)	622
PspGI	CCWGG	8 cut(s)	466, 1637, 1897, 2292, 2762, 3171, 3222, 3273
PspLI	CGTACG	1 cut(s)	1347
PspN4I	GGNNCC	5 cut(s)	511, 867, 1267, 1887, 2565
PspPI	GGNCC	1 cut(s)	55
PsrI	GAACNNNNNNTAC	2 cut(s)	3084, 3116
PstI	CTGCAG	4 cut(s)	405, 738, 1602, 1849
PstNI	CAGNNNCTG	2 cut(s)	2464, 2981
PsuI	RGATCY	5 cut(s)	509, 574, 1885, 2023, 3364
RsaI	GTAC	7 cut(s)	1349, 1947, 2014, 2257, 2442, 2844, 2979
RsaNI	GTAC	7 cut(s)	1348, 1946, 2013, 2256, 2441, 2843, 2978
RseI	CAYNNNNRTG	6 cut(s)	593, 701, 1301, 1996, 3194, 3245
SalI	GTCGAC	2 cut(s)	23, 1893
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	8 cut(s)	92, 923, 941, 947, 1134, 1433, 1448, 3022
ScrFI	CCNGG	9 cut(s)	468, 526, 1639, 1899, 2294, 2764, 3173, 3224, 3275
SduI	GDGCHC	7 cut(s)	250, 1381, 1545, 1609, 2500, 3133, 3355
SexAI	ACCWGGT	1 cut(s)	1637
SfaNI	GCATC	5 cut(s)	1071, 1900, 2044, 2194, 3163
SfcI	CTRYAG	5 cut(s)	401, 734, 1598, 1773, 1845
SmiMI	CAYNNNNRTG	6 cut(s)	593, 701, 1301, 1996, 3194, 3245
SmlI	CTYRAG	1 cut(s)	1610
SmoI	CTYRAG	1 cut(s)	1610
SnaBI	TACGTA	1 cut(s)	1351
SpeI	ACTAGT	1 cut(s)	446
SphI	GCATGC	1 cut(s)	122
SseBI	AGGCCT	2 cut(s)	426, 1323
SsiI	CCGC	9 cut(s)	139, 155, 1695, 3139, 3142, 3178, 3229, 3346, 3390
SspI	AATATT	2 cut(s)	2356, 3042
SspMI	CTAG	7 cut(s)	447, 692, 918, 1059, 2501, 3009, 3318
StuI	AGGCCT	2 cut(s)	426, 1323
StyD4I	CCNGG	9 cut(s)	466, 524, 1637, 1897, 2292, 2762, 3171, 3222, 3273
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	7 cut(s)	134, 1147, 1417, 2386, 2568, 2890, 3287
TaiI	ACGT	8 cut(s)	30, 233, 802, 1349, 1353, 2341, 3222, 3273
TaqI	TCGA	8 cut(s)	24, 89, 129, 181, 1422, 1894, 2557, 2862
TatI	WGTACW	1 cut(s)	2842
TauI	GCSGC	2 cut(s)	158, 3142
TfiI	GAWTC	9 cut(s)	183, 287, 745, 2018, 2473, 2527, 2602, 2678, 2851
TseFI	GTSAC	7 cut(s)	703, 716, 1279, 1291, 1476, 2833, 3287
TseI	GCWGC	8 cut(s)	269, 403, 602, 669, 981, 2396, 2420, 3078
Tsp45I	GTSAC	7 cut(s)	703, 716, 1279, 1291, 1476, 2833, 3287
TspGWI	ACGGA	3 cut(s)	280, 2048, 3035
VspI	ATTAAT	1 cut(s)	1032
XceI	RCATGY	6 cut(s)	23, 122, 254, 1367, 1437, 2174
XcmI	CCANNNNNNNNNTGG	1 cut(s)	543
XmiI	GTMKAC	5 cut(s)	24, 191, 796, 1894, 2005
XmnI	GAANNNNTTC	3 cut(s)	966, 1803, 2054
XspI	CTAG	7 cut(s)	447, 692, 918, 1059, 2501, 3009, 3318
ZraI	GACGTC	2 cut(s)	3220, 3271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.