Rorug01G0260500

conserved oligomeric Golgi complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009739
Physical Location & Seq
Reverse (-)
37016718 .. 37017017
300 bp
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UTR
Exon/CDS
Intron
Rorug01G0260500.1

Sequence Viewer

Length: 300 bp
ATGGGATGGAAACTCCCAGATTCAAATTTTGTGAAGCTTAATTCTGATGGCTCAATGAAGCATAATCATCAAGGTGTTGCAGGTTTTGTGATTATAAATGAAGAAAGAAATCCTCTGATTCCTATAACCAAAGATATAGGTTATACTGATGTTCTCATTGGGGAGGTGTTGGCTTTAAGAGTAGGCCTTACAACAGCTTTTATCCATAGTCATACTCATATTCAGGTTCAAGGAGATTCAAAAATTCTCATTGACAGCATGTCACCAGAAAGATTTCTTGCCCTTGGAAGATCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dor1

Protein Analysis

99

Amino Acids

10.94

Weight (kDa)

6.97

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 14 - 87 1.5e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 71
AcsI RAATTY 2 cut(s) 25, 243
AgsI TTSAA 3 cut(s) 24, 230, 240
AhdI GACNNNNNGTC 1 cut(s) 259
AluBI AGCT 2 cut(s) 37, 197
AluI AGCT 2 cut(s) 37, 197
AoxI GGCC 1 cut(s) 184
ApoI RAATTY 2 cut(s) 25, 243
Asp700I GAANNNNTTC 1 cut(s) 273
AsuHPI GGTGA 1 cut(s) 255
BccI CCATC 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 71
BmeRI GACNNNNNGTC 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 1 cut(s) 11
BshFI GGCC 1 cut(s) 186
BsnI GGCC 1 cut(s) 186
Bsp143I GATC 1 cut(s) 290
BspANI GGCC 1 cut(s) 186
BspMI ACCTGC 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 1 cut(s) 290
BssT1I CCWWGG 1 cut(s) 283
BstF5I GGATG 1 cut(s) 11
BstKTI GATC 1 cut(s) 293
BstMBI GATC 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 262
BsuRI GGCC 1 cut(s) 186
BtsCI GGATG 1 cut(s) 11
BveI ACCTGC 1 cut(s) 71
CviAII CATG 1 cut(s) 259
CviJI RGCY 5 cut(s) 37, 51, 173, 186, 197
CviKI_1 RGCY 5 cut(s) 37, 51, 173, 186, 197
DpnI GATC 1 cut(s) 292
DpnII GATC 1 cut(s) 290
DriI GACNNNNNGTC 1 cut(s) 259
Eam1105I GACNNNNNGTC 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 283
Eco147I AGGCCT 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 1 cut(s) 262
FaiI YATR 9 cut(s) 63, 95, 125, 137, 144, 207, 213, 219, 260
FatI CATG 1 cut(s) 258
FokI GGATG 1 cut(s) 18
HaeIII GGCC 1 cut(s) 186
Hin1II CATG 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 3 cut(s) 20, 118, 236
HphI GGTGA 1 cut(s) 255
Hpy188I TCNGA 2 cut(s) 46, 117
HpyCH4V TGCA 1 cut(s) 80
Hsp92II CATG 1 cut(s) 262
Kzo9I GATC 1 cut(s) 290
LpnPI CCDG 4 cut(s) 30, 66, 209, 279
MaeIII GTNAC 1 cut(s) 261
MalI GATC 1 cut(s) 292
MboI GATC 1 cut(s) 290
MboII GAAGA 2 cut(s) 113, 300
MluCI AATT 3 cut(s) 25, 40, 243
MnlI CCTC 2 cut(s) 123, 157
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 2 cut(s) 39, 176
MslI CAYNNNNRTG 1 cut(s) 72
NdeII GATC 1 cut(s) 290
NlaIII CATG 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 261
NspI RCATGY 1 cut(s) 262
PceI AGGCCT 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 3 cut(s) 20, 118, 236
PsiI TTATAA 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 2 cut(s) 39, 176
Sau3AI GATC 1 cut(s) 290
SetI ASST 7 cut(s) 39, 76, 85, 142, 168, 199, 228
SgeI CNNG 9 cut(s) 29, 83, 93, 236, 242, 271, 278, 290, 296
SmiMI CAYNNNNRTG 1 cut(s) 72
Sse9I AATT 3 cut(s) 25, 40, 243
SseBI AGGCCT 1 cut(s) 186
StuI AGGCCT 1 cut(s) 186
StyI CCWWGG 1 cut(s) 283
TasI AATT 3 cut(s) 25, 40, 243
TfiI GAWTC 3 cut(s) 20, 118, 236
Tru1I TTAA 2 cut(s) 39, 176
Tru9I TTAA 2 cut(s) 39, 176
TseFI GTSAC 1 cut(s) 261
Tsp45I GTSAC 1 cut(s) 261
TspDTI ATGAA 2 cut(s) 71, 114
XapI RAATTY 2 cut(s) 25, 243
XceI RCATGY 1 cut(s) 262
XmnI GAANNNNTTC 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.