Rh4BG374000

conserved oligomeric Golgi complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0009739
Physical Location & Seq
Forward (+)
53031498 .. 53035698
4201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG374000.1

Sequence Viewer

Length: 402 bp
ATGTTTGTTTGCAAGCTTTCAACCATGCACCCCAAGTTGCCCGTTATACAAGCTCTGGCTGCAGAAGTCAGGCAGACCACCCAATCTCTTCTTTCTCAGCTTCTTCAGAAACTTCGCTCAAACATTAAGTATTGTGCTATGGGGCTTGGTTGGGTTGGGCTAGATTTCCGGGGACTGCTACCATCACTTTTTGAAGAGGCAGTTCTCAACTTGTTCGCAAAAAATATGAGTACAGCAGTTGAAAATTTTCAGTTGGTCTTGGATTCACATCGTTGGGTCCCACTACCAGCAGTTGGTTTTCCAGAAAATAGTGTTAATGATGAAAGTCTGGATGATGTAACTCCGCCATCTTATCTTATGGAACAACCACCTCTTGCTGTTTTTGTTAATGGTAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dor1

Protein Analysis

133

Amino Acids

14.8

Weight (kDa)

6.07

Isoelectric Point (pI)

54.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dor1 PF04124 2 - 43 5.4e-10 Dor1-like family
Dor1 PF04124 43 - 81 1e-09 Dor1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 293
AciI CCGC 1 cut(s) 344
AcsI RAATTY 1 cut(s) 244
AcuI CTGAAG 1 cut(s) 89
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 3 cut(s) 21, 194, 242
AluBI AGCT 3 cut(s) 16, 53, 100
AluI AGCT 3 cut(s) 16, 53, 100
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 244
Asp700I GAANNNNTTC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 1 cut(s) 170
AvaII GGWCC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 190, 355
BcnI CCSGG 1 cut(s) 170
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 2 cut(s) 278, 279
BmrFI CCNGG 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 170
BsaBI GATNNNNATC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse8I GATNNNNATC 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 1 cut(s) 337
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 46
BsiSI CCGG 1 cut(s) 169
BslFI GGGAC 2 cut(s) 186, 263
BslI CCNNNNNNNGG 1 cut(s) 293
BsmFI GGGAC 2 cut(s) 186, 263
BspACI CCGC 1 cut(s) 344
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 278, 279
BspMAI CTGCAG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 169
Bst6I CTCTTC 2 cut(s) 93, 189
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 337
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 231
CviAII CATG 1 cut(s) 25
CviJI RGCY 6 cut(s) 16, 53, 59, 100, 145, 160
CviKI_1 RGCY 6 cut(s) 16, 53, 59, 100, 145, 160
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 1 cut(s) 96
Eam1104I CTCTTC 2 cut(s) 93, 189
EarI CTCTTC 2 cut(s) 93, 189
EciI GGCGGA 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 277
FaeI CATG 1 cut(s) 28
FaiI YATR 5 cut(s) 26, 47, 140, 227, 359
FaqI GGGAC 2 cut(s) 186, 263
FatI CATG 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 161
GluI GCNGC 1 cut(s) 60
HapII CCGG 1 cut(s) 169
Hin1II CATG 1 cut(s) 28
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 1 cut(s) 263
HpaII CCGG 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 2 cut(s) 302, 329
HpyCH4V TGCA 3 cut(s) 12, 28, 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 1 cut(s) 28
KflI GGGWCCC 1 cut(s) 277
LpnPI CCDG 6 cut(s) 41, 55, 182, 300, 314, 315
Lsp1109I GCAGC 1 cut(s) 46
MaeI CTAG 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 337
MboII GAAGA 3 cut(s) 80, 95, 206
MluCI AATT 1 cut(s) 244
MnlI CCTC 2 cut(s) 190, 381
MroXI GAANNNNTTC 1 cut(s) 246
MseI TTAA 3 cut(s) 126, 315, 387
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 59
NciI CCSGG 1 cut(s) 170
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 2 cut(s) 278, 279
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 263
PflMI CCANNNNNTGG 1 cut(s) 293
PkrI GCNGC 1 cut(s) 61
PpuMI RGGWCCY 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 277
PspN4I GGNNCC 2 cut(s) 278, 279
PspPI GGNCC 1 cut(s) 277
PspPPI RGGWCCY 1 cut(s) 277
PstI CTGCAG 1 cut(s) 64
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SaqAI TTAA 3 cut(s) 126, 315, 387
SatI GCNGC 1 cut(s) 60
Sau96I GGNCC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 170
SetI ASST 4 cut(s) 18, 55, 102, 373
SfcI CTRYAG 1 cut(s) 60
SinI GGWCC 1 cut(s) 277
Sse9I AATT 1 cut(s) 244
SsiI CCGC 1 cut(s) 344
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 168
TasI AATT 1 cut(s) 244
TatI WGTACW 1 cut(s) 230
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 3 cut(s) 126, 315, 387
Tru9I TTAA 3 cut(s) 126, 315, 387
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 336
Van91I CCANNNNNTGG 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 277
XapI RAATTY 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.