Rh4CG387900

conserved oligomeric Golgi complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0009739
Physical Location & Seq
Forward (+)
63933026 .. 63937226
4201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG387900.1

Sequence Viewer

Length: 396 bp
ATGAACCAAACGTTGCTAGCGAATCACAGTACATTGCTCGACTTACTTGAAATTCCGCAGCTTATGGATACATGTGTGAGGAATGGAAATTATGATGAAGCTCTTGACTTAGAGATGTTTGTTTGCAAGCTTTCAACCATGCACCCCAAGTTGCCCGTTATACAAGCTCTGGCTGCAGAAGTCAGGCAGACCACCCAATCTCTTCTTTCTCAGCTTCTTCAGAAACTTCGCTCAAACATTAAGTATTGTGCTATGGGGCTTGGTTGGGTTGGGCTAGATTTCCGGGGACTGCTACCATCACTTTTTGAAGAGGCAGTTCTCAACTTGTTCGCAAAAAATATGAGTACAGCAGTTGAAAATTTTCAGGTGAATGGTGATGAATTTGAATTGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dor1

Protein Analysis

131

Amino Acids

14.74

Weight (kDa)

4.88

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dor1 PF04124 1 - 81 1.3e-31 Dor1-like family
Dor1 PF04124 80 - 119 6.9e-10 Dor1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 56
AclI AACGTT 1 cut(s) 11
AcsI RAATTY 3 cut(s) 51, 358, 380
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 2 cut(s) 31, 346
AflIII ACRYGT 1 cut(s) 71
AgsI TTSAA 5 cut(s) 50, 135, 308, 356, 386
AluBI AGCT 5 cut(s) 61, 101, 130, 167, 214
AluI AGCT 5 cut(s) 61, 101, 130, 167, 214
ApeKI GCWGC 2 cut(s) 58, 173
ApoI RAATTY 3 cut(s) 51, 358, 380
Asp700I GAANNNNTTC 1 cut(s) 360
AsuC2I CCSGG 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 379, 386
AsuNHI GCTAGC 1 cut(s) 16
BaeI ACNNNNGTAYC 2 cut(s) 60, 93
BbvI GCAGC 2 cut(s) 70, 160
BccI CCATC 1 cut(s) 304
BciVI GTATCC 1 cut(s) 61
BcnI CCSGG 1 cut(s) 284
BfaI CTAG 2 cut(s) 17, 275
BfmI CTRYAG 1 cut(s) 174
BfuI GTATCC 1 cut(s) 61
BisI GCNGC 2 cut(s) 59, 174
BlsI GCNGC 2 cut(s) 60, 175
Bme1390I CCNGG 1 cut(s) 284
BmrFI CCNGG 1 cut(s) 284
BmtI GCTAGC 1 cut(s) 20
BpuMI CCSGG 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 283
Bse3DI GCAATG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 283
BseMI GCAATG 1 cut(s) 32
BseMII CTCAG 1 cut(s) 224
BseXI GCAGC 2 cut(s) 70, 160
BsiSI CCGG 1 cut(s) 283
BslFI GGGAC 1 cut(s) 300
BsmFI GGGAC 1 cut(s) 300
BspACI CCGC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 223
BspMAI CTGCAG 1 cut(s) 178
BspOI GCTAGC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 2 cut(s) 207, 303
BstC8I GCNNGC 2 cut(s) 18, 128
BstDEI CTNAG 2 cut(s) 109, 210
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 70, 160
BsuI GTATCC 1 cut(s) 61
Cac8I GCNNGC 2 cut(s) 18, 128
Csp6I GTAC 2 cut(s) 30, 345
CviAII CATG 2 cut(s) 72, 139
CviJI RGCY 8 cut(s) 61, 101, 130, 167, 173, 214, 259, 274
CviKI_1 RGCY 8 cut(s) 61, 101, 130, 167, 173, 214, 259, 274
CviQI GTAC 2 cut(s) 30, 345
DdeI CTNAG 2 cut(s) 109, 210
Eam1104I CTCTTC 2 cut(s) 207, 303
EarI CTCTTC 2 cut(s) 207, 303
Eco57I CTGAAG 1 cut(s) 203
FaeI CATG 2 cut(s) 75, 142
FaiI YATR 7 cut(s) 65, 73, 93, 140, 161, 254, 341
FaqI GGGAC 1 cut(s) 300
FatI CATG 2 cut(s) 71, 138
Fnu4HI GCNGC 2 cut(s) 59, 174
Fsp4HI GCNGC 2 cut(s) 59, 174
FspBI CTAG 2 cut(s) 17, 275
GluI GCNGC 2 cut(s) 59, 174
HapII CCGG 1 cut(s) 283
Hin1II CATG 2 cut(s) 75, 142
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 1 cut(s) 22
HpaII CCGG 1 cut(s) 283
HphI GGTGA 2 cut(s) 379, 386
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 4 cut(s) 126, 142, 176, 391
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 2 cut(s) 109, 210
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 2 cut(s) 75, 142
LpnPI CCDG 4 cut(s) 155, 169, 296, 350
Lsp1109I GCAGC 2 cut(s) 70, 160
MaeI CTAG 2 cut(s) 17, 275
MaeII ACGT 1 cut(s) 11
MboII GAAGA 3 cut(s) 194, 209, 320
MluCI AATT 5 cut(s) 51, 88, 358, 380, 386
MnlI CCTC 2 cut(s) 72, 304
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 1 cut(s) 240
MspI CCGG 1 cut(s) 283
MspR9I CCNGG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 173
NciI CCSGG 1 cut(s) 284
NheI GCTAGC 1 cut(s) 16
NlaIII CATG 2 cut(s) 75, 142
NspI RCATGY 1 cut(s) 75
PciI ACATGT 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 2 cut(s) 60, 175
PscI ACATGT 1 cut(s) 71
Psp1406I AACGTT 1 cut(s) 11
PstI CTGCAG 1 cut(s) 178
RsaI GTAC 2 cut(s) 31, 346
RsaNI GTAC 2 cut(s) 30, 345
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 2 cut(s) 59, 174
ScrFI CCNGG 1 cut(s) 284
SetI ASST 7 cut(s) 14, 63, 103, 132, 169, 216, 369
SfcI CTRYAG 1 cut(s) 174
Sse9I AATT 5 cut(s) 51, 88, 358, 380, 386
SsiI CCGC 1 cut(s) 56
SspMI CTAG 2 cut(s) 17, 275
StyD4I CCNGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 1 cut(s) 14
TaqI TCGA 1 cut(s) 39
TasI AATT 5 cut(s) 51, 88, 358, 380, 386
TatI WGTACW 2 cut(s) 29, 344
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseI GCWGC 2 cut(s) 58, 173
TspDTI ATGAA 3 cut(s) 17, 111, 393
XapI RAATTY 3 cut(s) 51, 358, 380
XceI RCATGY 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 2 cut(s) 17, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.