Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009739

Physical Location & Seq

Genomic Coordinates Forward (+)

18227528 .. 18231869

Gene Structure 4342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG118300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCTCCGGTTGTCAACCAATTGGGACTGGTTCGTCAGTCTCACTGTTGATGACTACCCTTTTCTCAAACAAGACGGTTTAGACCTTCGTATGTCAATCAAAGGTTTCAAAGTTTTGGGTGGGAAGGCGAGAAATGAAGGGTCTGGGAATGGAAATGCTGAATCAAGATCATACCTTGAAAAGAAGCTCATAGCTACACGGATGGTTATTCAGTATGGGTGGGGACCTGATGATAGTCCTGCAATATATTATCACAGCAATGCGTCTACTGCTTTAAGCATGGGGAATAACCATGAGTATGATATGGCAGTTAAAGTTGAAAAGATCCATGATTTAGCATATTATAAAGCTAAAGAAATGCTCCATCGAAATGAGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

126

Amino Acids

14.47

Weight (kDa)

6.91

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009739)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396731
rosa_roxburghii	Rroxscaffold_3G00239480
rosa_rugosa	Rorug01G0260500 Rorug04G0356400 Rorug05G0382300 Rorug07G0227200
rosa_samantha	Rh2AG227000 Rh2AG341200 Rh2BG289100 Rh2DG234500 Rh2DG284300 Rh4BG374000 Rh4CG211000 Rh4CG387900 Rh5AG167300 Rh6AG410000 Rh6BG118300 Rh6BG323100 Rh6DG105000 Rh7AG256100 Rh7AG478300 Rh7CG272500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AasI	GACNNNNNNGTC	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	266
AclWI	GGATC	1 cut(s)	319
AgsI	TTSAA	3 cut(s)	109, 179, 320
AluBI	AGCT	3 cut(s)	187, 194, 350
AluI	AGCT	3 cut(s)	187, 194, 350
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	224
BccI	CCATC	2 cut(s)	196, 372
BcoDI	GTCTC	1 cut(s)	44
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	6
Bse1I	ACTGG	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	265
BseGI	GGATG	1 cut(s)	207
BseMI	GCAATG	1 cut(s)	265
BseNI	ACTGG	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	7
BslFI	GGGAC	2 cut(s)	38, 237
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	2 cut(s)	38, 237
Bsp143I	GATC	2 cut(s)	167, 324
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	2 cut(s)	167, 324
Bst4CI	ACNGT	2 cut(s)	46, 77
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	170, 327
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	167, 324
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	224
CseI	GACGC	1 cut(s)	252
CviAII	CATG	3 cut(s)	280, 293, 329
CviJI	RGCY	3 cut(s)	187, 194, 350
CviKI_1	RGCY	3 cut(s)	187, 194, 350
DpnI	GATC	2 cut(s)	169, 326
DpnII	GATC	2 cut(s)	167, 324
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	224
FaeI	CATG	3 cut(s)	283, 296, 332
FaqI	GGGAC	2 cut(s)	38, 237
FatI	CATG	3 cut(s)	279, 292, 328
FblI	GTMKAC	1 cut(s)	266
FokI	GGATG	1 cut(s)	214
HapII	CCGG	1 cut(s)	7
HgaI	GACGC	1 cut(s)	252
Hin1II	CATG	3 cut(s)	283, 296, 332
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	7
Hpy166II	GTNNAC	2 cut(s)	15, 267
Hpy188III	TCNNGA	1 cut(s)	165
Hpy8I	GTNNAC	2 cut(s)	15, 267
HpyAV	CCTTC	3 cut(s)	95, 118, 131
HpyCH4III	ACNGT	2 cut(s)	46, 77
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
Hsp92II	CATG	3 cut(s)	283, 296, 332
Kzo9I	GATC	2 cut(s)	167, 324
LmnI	GCTCC	2 cut(s)	9, 366
LpnPI	CCDG	5 cut(s)	13, 20, 129, 240, 252
MalI	GATC	2 cut(s)	169, 326
MboI	GATC	2 cut(s)	167, 324
MfeI	CAATTG	1 cut(s)	19
MflI	RGATCY	1 cut(s)	324
MluCI	AATT	1 cut(s)	19
MseI	TTAA	2 cut(s)	275, 312
MslI	CAYNNNNRTG	3 cut(s)	258, 297, 369
MspI	CCGG	1 cut(s)	7
MunI	CAATTG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeII	GATC	2 cut(s)	167, 324
NlaIII	CATG	3 cut(s)	283, 296, 332
NlaIV	GGNNCC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	161
PpuMI	RGGWCCY	1 cut(s)	224
PsiI	TTATAA	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	224
PspPPI	RGGWCCY	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	324
RseI	CAYNNNNRTG	3 cut(s)	258, 297, 369
SaqAI	TTAA	2 cut(s)	275, 312
Sau3AI	GATC	2 cut(s)	167, 324
Sau96I	GGNCC	1 cut(s)	224
SetI	ASST	7 cut(s)	87, 106, 177, 189, 196, 229, 352
SinI	GGWCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	3 cut(s)	258, 297, 369
Sse9I	AATT	1 cut(s)	19
TaaI	ACNGT	2 cut(s)	46, 77
TaqI	TCGA	1 cut(s)	367
TasI	AATT	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	275, 312
Tru9I	TTAA	2 cut(s)	275, 312
TscAI	CASTG	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	150
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.