Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009739

Physical Location & Seq

Genomic Coordinates Forward (+)

67008059 .. 67018230

Gene Structure 10172 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG478300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAGTTCGGCGGTGCTGAAGGAGAGAAGAAGGCCAAATGCTCTGACTGTGTCCCTTAATTCGAAGATTTACAGAGTCAGCGATAGGCTCTTCCTCTGCCTCTCCGGCCTCACCACCGATGCTCAGACTCTAGAACACAACACCAGCAACTACCTTCAAGAAGACCTGTCTGTACTACATTTGGTCATCATAGCCATGCTTCCTCGTCCTAAAAAATCACGCCACCACTGCCGGCATTCTCGCCAGAAAACTCAGGTATGGCAGAGGCACCTCCAGCAGCGTAGCACTCTGGAATCGTCGAGAACCACCAAGACCATTTCGGCCTTCTACAACAATTCGATTACCGGAGGCTTATTTACATGCTTGAGCTTCAATTCCCTATTCAATTCGAGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

15.18

Weight (kDa)

10.69

Isoelectric Point (pI)

59.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009739)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396731
rosa_roxburghii	Rroxscaffold_3G00239480
rosa_rugosa	Rorug01G0260500 Rorug04G0356400 Rorug05G0382300 Rorug07G0227200
rosa_samantha	Rh2AG227000 Rh2AG341200 Rh2BG289100 Rh2DG234500 Rh2DG284300 Rh4BG374000 Rh4CG211000 Rh4CG387900 Rh5AG167300 Rh6AG410000 Rh6BG118300 Rh6BG323100 Rh6DG105000 Rh7AG256100 Rh7AG478300 Rh7CG272500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	267
AciI	CCGC	1 cut(s)	11
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	174
AgsI	TTSAA	3 cut(s)	158, 373, 385
AluBI	AGCT	2 cut(s)	369, 396
AluI	AGCT	2 cut(s)	369, 396
AoxI	GGCC	3 cut(s)	32, 106, 321
ApeKI	GCWGC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	103
AsuII	TTCGAA	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	289
BfaI	CTAG	1 cut(s)	131
BglI	GCCNNNNNGGC	1 cut(s)	105
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	269
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	257
Bpu14I	TTCGAA	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	385
BsaWI	WCCGGW	1 cut(s)	344
Bse118I	RCCGGY	1 cut(s)	231
BseMII	CTCAG	2 cut(s)	137, 266
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	3 cut(s)	34, 108, 323
BshNI	GGYRCC	1 cut(s)	267
BsiSI	CCGG	3 cut(s)	105, 232, 345
BslFI	GGGAC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	3 cut(s)	34, 108, 323
Bsp119I	TTCGAA	1 cut(s)	62
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	3 cut(s)	34, 108, 323
BspCNI	CTCAG	2 cut(s)	136, 265
BspLI	GGNNCC	1 cut(s)	269
BspQI	GCTCTTC	1 cut(s)	95
BspT104I	TTCGAA	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	95
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	2 cut(s)	123, 252
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 228, 274
BstNSI	RCATGY	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	168
BsuRI	GGCC	3 cut(s)	34, 108, 323
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	173
CviAII	CATG	2 cut(s)	196, 360
CviJI	RGCY	8 cut(s)	34, 88, 108, 194, 323, 351, 369, 396
CviKI_1	RGCY	8 cut(s)	34, 88, 108, 194, 323, 351, 369, 396
CviQI	GTAC	1 cut(s)	173
DdeI	CTNAG	2 cut(s)	123, 252
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	38
FaeI	CATG	2 cut(s)	199, 363
FaiI	YATR	4 cut(s)	191, 197, 259, 361
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	2 cut(s)	195, 359
Fnu4HI	GCNGC	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	278
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	1 cut(s)	278
GsuI	CTGGAG	1 cut(s)	257
HaeIII	GGCC	3 cut(s)	34, 108, 323
HapII	CCGG	3 cut(s)	105, 232, 345
Hin1II	CATG	2 cut(s)	199, 363
HinfI	GANTC	3 cut(s)	75, 127, 293
HpaII	CCGG	3 cut(s)	105, 232, 345
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	45, 126
Hpy188III	TCNNGA	4 cut(s)	131, 158, 290, 300
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	4 cut(s)	13, 24, 164, 334
HpyCH4III	ACNGT	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 228, 274
HpyF3I	CTNAG	2 cut(s)	123, 252
Hsp92II	CATG	2 cut(s)	199, 363
KroI	GCCGGC	1 cut(s)	231
KroNI	GCCGGC	1 cut(s)	233
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	1 cut(s)	393
LpnPI	CCDG	9 cut(s)	118, 157, 179, 239, 245, 257, 275, 287, 358
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	131
MboII	GAAGA	4 cut(s)	39, 76, 82, 173
MluCI	AATT	4 cut(s)	58, 334, 373, 385
MlyI	GAGTC	2 cut(s)	84, 121
MnlI	CCTC	8 cut(s)	104, 110, 119, 213, 258, 281, 341, 384
MroNI	GCCGGC	1 cut(s)	231
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	194
MspI	CCGG	3 cut(s)	105, 232, 345
Mva1269I	GAATGC	1 cut(s)	235
MwoI	GCNNNNNNNGC	3 cut(s)	105, 228, 274
NaeI	GCCGGC	1 cut(s)	233
NgoMIV	GCCGGC	1 cut(s)	231
NlaIII	CATG	2 cut(s)	199, 363
NlaIV	GGNNCC	1 cut(s)	269
NspI	RCATGY	1 cut(s)	363
NspV	TTCGAA	1 cut(s)	62
PciSI	GCTCTTC	1 cut(s)	95
PctI	GAATGC	1 cut(s)	235
PdiI	GCCGGC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	293
PflFI	GACNNNGTC	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	279
PleI	GAGTC	2 cut(s)	83, 121
PpsI	GAGTC	2 cut(s)	83, 121
PspN4I	GGNNCC	1 cut(s)	269
PsyI	GACNNNGTC	1 cut(s)	49
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	278
SchI	GAGTC	2 cut(s)	84, 121
SetI	ASST	6 cut(s)	156, 168, 258, 273, 371, 398
SfaNI	GCATC	1 cut(s)	109
SfuI	TTCGAA	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	4 cut(s)	58, 334, 373, 385
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	4 cut(s)	62, 299, 338, 389
TasI	AATT	4 cut(s)	58, 334, 373, 385
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	233
TseI	GCWGC	1 cut(s)	277
TspRI	CASTG	1 cut(s)	233
Tth111I	GACNNNGTC	1 cut(s)	49
XbaI	TCTAGA	1 cut(s)	130
XceI	RCATGY	1 cut(s)	363
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.