Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009739

Physical Location & Seq

Genomic Coordinates Forward (+)

44054143 .. 44057431

Gene Structure 3289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG211000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGTTCGGTGGTGCTGAAGGAGAGAAGAAGGCCAAATGCTCTGACTGTGTCCCTTAATTCGAAGATTTACAGAGTCAGCGATAGGCTCTTCCTCTGCCTCTCCGGACTCACCACCGATGCTCAGACTCTGAGATTGATTTCATTCTATGCTTTTTGCTTTTCAACGATAGCTACACGGATGGTTATTCAGTATGGGTGGGGACCTGATGATAGTCCTGCAATATATTATCACAGCAATGCGTCTACTGCTTTAAGCATGGGGAATAACCATGAGTATGATATGGCAGTTAAAGTTGAAAAGATCCATGATTTAGCATATTATAAAGCTAAAGAAATGCTCCATCGAAATGAGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

119

Amino Acids

13.7

Weight (kDa)

8.93

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009739)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396731
rosa_roxburghii	Rroxscaffold_3G00239480
rosa_rugosa	Rorug01G0260500 Rorug04G0356400 Rorug05G0382300 Rorug07G0227200
rosa_samantha	Rh2AG227000 Rh2AG341200 Rh2BG289100 Rh2DG234500 Rh2DG284300 Rh4BG374000 Rh4CG211000 Rh4CG387900 Rh5AG167300 Rh6AG410000 Rh6BG118300 Rh6BG323100 Rh6DG105000 Rh7AG256100 Rh7AG478300 Rh7CG272500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	245
AccIII	TCCGGA	1 cut(s)	104
AclWI	GGATC	1 cut(s)	298
AcuI	CTGAAG	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	165, 299
AluBI	AGCT	2 cut(s)	173, 329
AluI	AGCT	2 cut(s)	173, 329
AlwI	GGATC	1 cut(s)	298
AlwNI	CAGNNNCTG	1 cut(s)	130
Aor13HI	TCCGGA	1 cut(s)	104
AoxI	GGCC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	103
AsuII	TTCGAA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	203
BccI	CCATC	2 cut(s)	175, 351
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	204
BmsI	GCATC	1 cut(s)	109
Bpu14I	TTCGAA	1 cut(s)	62
BsaWI	WCCGGW	1 cut(s)	104
Bse3DI	GCAATG	1 cut(s)	244
BseAI	TCCGGA	1 cut(s)	104
BseGI	GGATG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	2 cut(s)	122, 137
BshFI	GGCC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	2 cut(s)	37, 216
BsmFI	GGGAC	2 cut(s)	37, 216
BsnI	GGCC	1 cut(s)	34
Bsp119I	TTCGAA	1 cut(s)	62
Bsp13I	TCCGGA	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	303
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	2 cut(s)	123, 136
BspEI	TCCGGA	1 cut(s)	104
BspLI	GGNNCC	1 cut(s)	204
BspPI	GGATC	1 cut(s)	298
BspQI	GCTCTTC	1 cut(s)	95
BspT104I	TTCGAA	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	244
BssMI	GATC	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	95
BstBI	TTCGAA	1 cut(s)	62
BstDEI	CTNAG	2 cut(s)	123, 131
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	303
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	203
CseI	GACGC	1 cut(s)	231
CviAII	CATG	3 cut(s)	259, 272, 308
CviJI	RGCY	4 cut(s)	34, 88, 173, 329
CviKI_1	RGCY	4 cut(s)	34, 88, 173, 329
DdeI	CTNAG	2 cut(s)	123, 131
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	203
FaeI	CATG	3 cut(s)	262, 275, 311
FaqI	GGGAC	2 cut(s)	37, 216
FatI	CATG	3 cut(s)	258, 271, 307
FblI	GTMKAC	1 cut(s)	245
FokI	GGATG	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	1 cut(s)	105
HgaI	GACGC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	262, 275, 311
HinfI	GANTC	3 cut(s)	75, 108, 127
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	3 cut(s)	45, 126, 132
Hpy188III	TCNNGA	1 cut(s)	105
Hpy8I	GTNNAC	1 cut(s)	246
HpyAV	CCTTC	2 cut(s)	13, 24
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	2 cut(s)	123, 131
Hsp92II	CATG	3 cut(s)	262, 275, 311
Kpn2I	TCCGGA	1 cut(s)	104
Kzo9I	GATC	1 cut(s)	303
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	1 cut(s)	345
LpnPI	CCDG	3 cut(s)	118, 219, 231
LweI	GCATC	1 cut(s)	109
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	3 cut(s)	39, 76, 82
MflI	RGATCY	1 cut(s)	303
MluCI	AATT	1 cut(s)	58
MlyI	GAGTC	3 cut(s)	84, 102, 121
MnlI	CCTC	2 cut(s)	104, 110
MroI	TCCGGA	1 cut(s)	104
MseI	TTAA	3 cut(s)	57, 254, 291
MslI	CAYNNNNRTG	3 cut(s)	237, 276, 348
MspI	CCGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	1 cut(s)	303
NlaIII	CATG	3 cut(s)	262, 275, 311
NlaIV	GGNNCC	1 cut(s)	204
NspV	TTCGAA	1 cut(s)	62
PciSI	GCTCTTC	1 cut(s)	95
PflFI	GACNNNGTC	1 cut(s)	49
PleI	GAGTC	3 cut(s)	83, 102, 121
PpsI	GAGTC	3 cut(s)	83, 102, 121
PpuMI	RGGWCCY	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	324
Psp5II	RGGWCCY	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	203
PspPPI	RGGWCCY	1 cut(s)	203
PstNI	CAGNNNCTG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	303
PsyI	GACNNNGTC	1 cut(s)	49
RseI	CAYNNNNRTG	3 cut(s)	237, 276, 348
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	3 cut(s)	57, 254, 291
Sau3AI	GATC	1 cut(s)	303
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	3 cut(s)	84, 102, 121
SetI	ASST	3 cut(s)	175, 208, 331
SfaNI	GCATC	1 cut(s)	109
SfuI	TTCGAA	1 cut(s)	62
SgeI	CNNG	7 cut(s)	117, 189, 218, 230, 271, 284, 320
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	3 cut(s)	237, 276, 348
Sse9I	AATT	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	2 cut(s)	62, 346
TasI	AATT	1 cut(s)	58
Tru1I	TTAA	3 cut(s)	57, 254, 291
Tru9I	TTAA	3 cut(s)	57, 254, 291
TspDTI	ATGAA	1 cut(s)	132
TspGWI	ACGGA	1 cut(s)	193
Tth111I	GACNNNGTC	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.