Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009739

Physical Location & Seq

Genomic Coordinates Reverse (-)

24037273 .. 24040504

Gene Structure 3232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG227000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAGTTCGGCGGTGCTGAAGGAGAGAAGAAGGCCAAATGCTCTGACTGTGTCCCTTAATTCGAAGATTTACAGAGTCAGCGATAGGCTCTTCCTCTGCCTCTCCGGCCTCACCACTGATGCTCAGACTCTGTTTCAGAGGCTTATAGAAGCAAAACGAAAAGCGAAAGCAAAACCAGAGAGAGGAGAGAAAATACTTTGGGGAAATCTATTAGCATTGGAATCAAGTCTTCAGGGAGCCAGGATGGGCACTGATGGTGGATATTGGAAGGCACCAGCAGCAACATTTACACCACAGGCTTCAAAATTGTTGACTGAGGACTGCATGGCATGTGTTGATCTTCTTGAAGTCATGCTGGTGGAACATTTGCAGAGAAGTAGAAGAAAGAAGAGAGGAGCAGCAGGAGCAGGCATATTACATCAGTGGTGGCAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0016020 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT HEAT_2

Protein Analysis

145

Amino Acids

16.25

Weight (kDa)

10.13

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009739)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396731
rosa_roxburghii	Rroxscaffold_3G00239480
rosa_rugosa	Rorug01G0260500 Rorug04G0356400 Rorug05G0382300 Rorug07G0227200
rosa_samantha	Rh2AG227000 Rh2AG341200 Rh2BG289100 Rh2DG234500 Rh2DG284300 Rh4BG374000 Rh4CG211000 Rh4CG387900 Rh5AG167300 Rh6AG410000 Rh6BG118300 Rh6BG323100 Rh6DG105000 Rh7AG256100 Rh7AG478300 Rh7CG272500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	271
AciI	CCGC	1 cut(s)	11
AcuI	CTGAAG	2 cut(s)	38, 215
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	2 cut(s)	303, 347
AjnI	CCWGG	1 cut(s)	239
AlwNI	CAGNNNCTG	1 cut(s)	130
AoxI	GGCC	2 cut(s)	32, 106
ApeKI	GCWGC	2 cut(s)	278, 398
AsuHPI	GGTGA	1 cut(s)	103
AsuII	TTCGAA	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	290, 410
BccI	CCATC	2 cut(s)	238, 248
BciT130I	CCWGG	1 cut(s)	241
BglI	GCCNNNNNGGC	1 cut(s)	105
BisI	GCNGC	2 cut(s)	279, 399
BlsI	GCNGC	2 cut(s)	280, 400
Bme1390I	CCNGG	1 cut(s)	241
BmiI	GGNNCC	2 cut(s)	238, 273
BmrFI	CCNGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	221
Bpu14I	TTCGAA	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	241
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	2 cut(s)	137, 306
BseRI	GAGGAG	2 cut(s)	198, 408
BseSI	GKGCMC	1 cut(s)	251
BseXI	GCAGC	2 cut(s)	290, 410
BshFI	GGCC	2 cut(s)	34, 108
BshNI	GGYRCC	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	2 cut(s)	34, 108
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	1 cut(s)	337
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	2 cut(s)	34, 108
BspCNI	CTCAG	2 cut(s)	136, 307
BspLI	GGNNCC	2 cut(s)	238, 273
BspQI	GCTCTTC	1 cut(s)	95
BspT104I	TTCGAA	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	271
BssMI	GATC	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	2 cut(s)	95, 383
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	2 cut(s)	123, 315
BstF5I	GGATG	1 cut(s)	249
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 278, 404
BstNI	CCWGG	1 cut(s)	241
BstNSI	RCATGY	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	239
BstSLI	GKGCMC	1 cut(s)	251
BstV1I	GCAGC	2 cut(s)	290, 410
BstV2I	GAAGAC	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	34, 108
BtsCI	GGATG	1 cut(s)	249
BtsIMutI	CAGTG	3 cut(s)	114, 249, 428
Cac8I	GCNNGC	1 cut(s)	409
CaiI	CAGNNNCTG	1 cut(s)	130
CviAII	CATG	3 cut(s)	325, 330, 352
CviJI	RGCY	6 cut(s)	34, 88, 108, 142, 239, 299
CviKI_1	RGCY	6 cut(s)	34, 88, 108, 142, 239, 299
DdeI	CTNAG	2 cut(s)	123, 315
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eam1104I	CTCTTC	2 cut(s)	95, 383
EarI	CTCTTC	2 cut(s)	95, 383
Eco57I	CTGAAG	2 cut(s)	38, 215
EcoRII	CCWGG	1 cut(s)	239
FaeI	CATG	3 cut(s)	328, 333, 355
FaiI	YATR	5 cut(s)	146, 326, 331, 353, 413
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	3 cut(s)	324, 329, 351
Fnu4HI	GCNGC	2 cut(s)	279, 399
FokI	GGATG	1 cut(s)	256
Fsp4HI	GCNGC	2 cut(s)	279, 399
GluI	GCNGC	2 cut(s)	279, 399
HaeIII	GGCC	2 cut(s)	34, 108
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	3 cut(s)	328, 333, 355
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HinfI	GANTC	3 cut(s)	75, 127, 221
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	3 cut(s)	45, 126, 138
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	1 cut(s)	312
HpyAV	CCTTC	3 cut(s)	13, 24, 262
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	324, 370
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 278, 404
HpyF3I	CTNAG	2 cut(s)	123, 315
Hsp92II	CATG	3 cut(s)	328, 333, 355
Kzo9I	GATC	1 cut(s)	337
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	3 cut(s)	236, 395, 404
Lsp1109I	GCAGC	2 cut(s)	290, 410
LweI	GCATC	1 cut(s)	109
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	7 cut(s)	39, 76, 82, 221, 332, 393, 400
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	2 cut(s)	58, 305
MlyI	GAGTC	2 cut(s)	84, 121
MnlI	CCTC	7 cut(s)	104, 110, 119, 132, 176, 310, 386
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	3 cut(s)	105, 278, 404
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	3 cut(s)	328, 333, 355
NlaIV	GGNNCC	2 cut(s)	238, 273
NspI	RCATGY	1 cut(s)	333
NspV	TTCGAA	1 cut(s)	62
PciSI	GCTCTTC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	221
PflFI	GACNNNGTC	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	280, 400
PleI	GAGTC	2 cut(s)	83, 121
PpsI	GAGTC	2 cut(s)	83, 121
Psp6I	CCWGG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	239
PspN4I	GGNNCC	2 cut(s)	238, 273
PstNI	CAGNNNCTG	1 cut(s)	130
PsyI	GACNNNGTC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	356
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	2 cut(s)	279, 399
Sau3AI	GATC	1 cut(s)	337
SchI	GAGTC	2 cut(s)	84, 121
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	251
SfaNI	GCATC	1 cut(s)	109
SfuI	TTCGAA	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	356
Sse9I	AATT	2 cut(s)	58, 305
SsiI	CCGC	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	62
TasI	AATT	2 cut(s)	58, 305
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	3 cut(s)	121, 256, 428
TseI	GCWGC	2 cut(s)	278, 398
TspRI	CASTG	3 cut(s)	121, 256, 428
Tth111I	GACNNNGTC	1 cut(s)	49
XceI	RCATGY	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.