Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009739

Physical Location & Seq

Genomic Coordinates Reverse (-)

20713310 .. 20714099

Gene Structure 790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0227200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAAACGATCAGTTTCGACAAGTACCACGATGATCACGTTCAATCTACTTTTCACGGTCTCCGATTTAGTAAATACAAAGAACCCAAGAAAACTGGAATTGACGTCGGTCTAGGCAGTCATACAGATAAGACCTTTACCACCATCCTCCATCAAAATAATGTGAATGGTCTAGAGATAAATACAAAGAACGACGAGTGGATACGCTGTGATTATCCTCTTCCTTCATCCTTCCTATTCCTAGCAGGCGATGTATTCCAGGTCTGGAGCAATGACAGAATACGACCTTGTAGACATAGAGTCAGCTTGACTGAGAATAACGTGAGATACTCTTTCGGACTCTATTCGATCAAGGAAGGAGTGACAAACATACCGGACGAGCTTGTGGACGAGGACCATCCCCTACGGTTTAAGCCATTGAATCATATAGAATATGCTAGAGCAAGATATGACAACAATGGGACTGACTTGGGCGTCAAGTCATATTGTGGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

165

Amino Acids

19.11

Weight (kDa)

6.22

Isoelectric Point (pI)

26.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	26 - 112	3.1e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0009739)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396731
rosa_roxburghii	Rroxscaffold_3G00239480
rosa_rugosa	Rorug01G0260500 Rorug04G0356400 Rorug05G0382300 Rorug07G0227200
rosa_samantha	Rh2AG227000 Rh2AG341200 Rh2BG289100 Rh2DG234500 Rh2DG284300 Rh4BG374000 Rh4CG211000 Rh4CG387900 Rh5AG167300 Rh6AG410000 Rh6BG118300 Rh6BG323100 Rh6DG105000 Rh7AG256100 Rh7AG478300 Rh7CG272500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	473
AatII	GACGTC	1 cut(s)	108
AccI	GTMKAC	1 cut(s)	292
AcyI	GRCGYC	2 cut(s)	105, 474
AfaI	GTAC	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	44, 421
AhdI	GACNNNNNGTC	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	2 cut(s)	306, 382
AluI	AGCT	2 cut(s)	306, 382
Alw26I	GTCTC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	394
BccI	CCATC	3 cut(s)	152, 159, 405
BciT130I	CCWGG	1 cut(s)	260
BciVI	GTATCC	1 cut(s)	195
BclI	TGATCA	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	4 cut(s)	113, 173, 242, 438
BfuI	GTATCC	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	394
BmeRI	GACNNNNNGTC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	394
BmrFI	CCNGG	1 cut(s)	260
BoxI	GACNNNNGTC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	286
BsaHI	GRCGYC	2 cut(s)	105, 474
BsaI	GGTCTC	1 cut(s)	65
BsaWI	WCCGGW	1 cut(s)	373
Bse1I	ACTGG	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	260
BseGI	GGATG	3 cut(s)	144, 227, 397
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	374
BslFI	GGGAC	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	475
Bso31I	GGTCTC	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	9, 34, 348
BspCNI	CTCAG	1 cut(s)	304
BspTNI	GGTCTC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	100
BssMI	GATC	3 cut(s)	9, 34, 348
BssNI	GRCGYC	2 cut(s)	105, 474
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	59, 408
Bst6I	CTCTTC	1 cut(s)	225
BstACI	GRCGYC	2 cut(s)	105, 474
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	3 cut(s)	144, 227, 397
BstKTI	GATC	3 cut(s)	12, 37, 351
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	3 cut(s)	9, 34, 348
BstNI	CCWGG	1 cut(s)	260
BstPAI	GACNNNNGTC	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	258
BsuI	GTATCC	1 cut(s)	195
BtgZI	GCGATG	1 cut(s)	264
BtsCI	GGATG	3 cut(s)	144, 227, 397
Cac8I	GCNNGC	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	394
CseI	GACGC	1 cut(s)	463
Csp6I	GTAC	1 cut(s)	25
CviJI	RGCY	3 cut(s)	306, 382, 415
CviKI_1	RGCY	3 cut(s)	306, 382, 415
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	3 cut(s)	11, 36, 350
DpnII	GATC	3 cut(s)	9, 34, 348
DrdI	GACNNNNNNGTC	1 cut(s)	473
DriI	GACNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	473
Eam1104I	CTCTTC	1 cut(s)	225
Eam1105I	GACNNNNNGTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	258
FaiI	YATR	8 cut(s)	123, 297, 371, 426, 428, 435, 450, 484
FaqI	GGGAC	1 cut(s)	475
FbaI	TGATCA	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	292
FokI	GGATG	3 cut(s)	131, 214, 384
FspBI	CTAG	4 cut(s)	113, 173, 242, 438
GsuI	CTGGAG	1 cut(s)	286
HapII	CCGG	1 cut(s)	374
HgaI	GACGC	1 cut(s)	463
Hin1I	GRCGYC	2 cut(s)	105, 474
HinfI	GANTC	3 cut(s)	300, 339, 421
HpaII	CCGG	1 cut(s)	374
Hpy166II	GTNNAC	2 cut(s)	293, 388
Hpy188I	TCNGA	2 cut(s)	65, 338
Hpy188III	TCNNGA	2 cut(s)	173, 265
Hpy8I	GTNNAC	2 cut(s)	293, 388
Hpy99I	CGWCG	2 cut(s)	110, 197
HpyAV	CCTTC	3 cut(s)	234, 241, 350
HpyCH4III	ACNGT	2 cut(s)	59, 408
HpyCH4IV	ACGT	3 cut(s)	39, 105, 321
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	3 cut(s)	39, 105, 321
Hsp92I	GRCGYC	2 cut(s)	105, 474
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	3 cut(s)	9, 34, 348
LmnI	GCTCC	1 cut(s)	267
LpnPI	CCDG	6 cut(s)	81, 231, 245, 250, 272, 387
MaeI	CTAG	4 cut(s)	113, 173, 242, 438
MaeII	ACGT	3 cut(s)	39, 105, 321
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	3 cut(s)	11, 36, 350
MboI	GATC	3 cut(s)	9, 34, 348
MboII	GAAGA	1 cut(s)	212
MluCI	AATT	1 cut(s)	99
MlyI	GAGTC	2 cut(s)	309, 333
MnlI	CCTC	3 cut(s)	158, 228, 385
MseI	TTAA	1 cut(s)	411
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
NdeII	GATC	3 cut(s)	9, 34, 348
NmuCI	GTSAC	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	421
PleI	GAGTC	2 cut(s)	308, 333
PpsI	GAGTC	2 cut(s)	308, 333
PshAI	GACNNNNGTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	394
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	411
Sau3AI	GATC	3 cut(s)	9, 34, 348
Sau96I	GGNCC	1 cut(s)	394
SchI	GAGTC	2 cut(s)	309, 333
ScrFI	CCNGG	1 cut(s)	260
SetI	ASST	8 cut(s)	42, 108, 137, 264, 289, 308, 324, 384
SinI	GGWCC	1 cut(s)	394
Sse9I	AATT	1 cut(s)	99
SspMI	CTAG	4 cut(s)	113, 173, 242, 438
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	59, 408
TaiI	ACGT	3 cut(s)	42, 108, 324
TaqI	TCGA	2 cut(s)	18, 347
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseFI	GTSAC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	394
XbaI	TCTAGA	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	292
XspI	CTAG	4 cut(s)	113, 173, 242, 438
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.