Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009739

Physical Location & Seq

Genomic Coordinates Forward (+)

32628981 .. 32632404

Gene Structure 3424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG284300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGATACATGTGTGAGGAATGGAAATTATGATGAAGCTCTTGACTTAGAGACGTTTGTTTGCAAGCTTTCAACCATGCACCCCAAGTTGCCCGTTATACAAGCTCTGGCTGCAGAAGTCAGGCAGACCACCCAATCTCTTCTTTCTCAGCTTCTTCAGAAACTTCGCTCAAACATTCAGTATTGTGCTATGGGGCTTGGTTATTGGGTTGGGCTAGATTTCCGGGGACTGCTACCATCACTTTTTGAAGAGGCAGTTCTCAACTTGTTCGCAAAAAATATGAGTACAGCAGTTGAAAATTTTCAGTTGGTCTTGGATTCACATCGTTGGGTCCCACTACCAGCAGTTGGTTTTCCAGCAAATAGTGTTAATGATGAAAGTCTGGATGATGTGCCGGTAGAAGTACCTTATTGGAATCAAGTCTTCAGGGACCCAGGATGGGCACTGATGGTGGATATTGGAAGGGGGAAGGCTAGAAATGAAGGTTCTGGGAATGGAAATGCTGAATCAAGATCATACCTTGAAAAGAAGCTCGTATTTTGTTTTGGTTCGCACATTGCAGCACAAATGCTACTCCCTTTTGGAGAGGAGAACTTGCTTTCTTCTTCAGAGTTAACGCAAGCACAGGAGATTGATTTCATTCTATGCTTTCTGCTTTTCAACGTTCCCTTCACTCTTTTACTCAATTTGCAACAGATAGCTACACGGATGGTTATTCAGTATGGGTGGGGACCTGATGATAGTCCTGCAATATATTATCACAGTAATGCGTCTACTGCTTTAAGCATGAGGAATAACCATGAGTATGATATGGCAGTTAAAGTTGAAAAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dor1

Protein Analysis

278

Amino Acids

31.19

Weight (kDa)

4.89

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dor1	PF04124	1 - 60	1e-21	Dor1-like family
Dor1	PF04124	60 - 99	2.2e-07	Dor1-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009739)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396731
rosa_roxburghii	Rroxscaffold_3G00239480
rosa_rugosa	Rorug01G0260500 Rorug04G0356400 Rorug05G0382300 Rorug07G0227200
rosa_samantha	Rh2AG227000 Rh2AG341200 Rh2BG289100 Rh2DG234500 Rh2DG284300 Rh4BG374000 Rh4CG211000 Rh4CG387900 Rh5AG167300 Rh6AG410000 Rh6BG118300 Rh6BG323100 Rh6DG105000 Rh7AG256100 Rh7AG478300 Rh7CG272500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	773
AclI	AACGTT	1 cut(s)	663
AcsI	RAATTY	1 cut(s)	298
AcuI	CTGAAG	3 cut(s)	140, 409, 591
AfaI	GTAC	2 cut(s)	286, 405
AfiI	CCNNNNNNNGG	2 cut(s)	347, 439
AflIII	ACRYGT	1 cut(s)	8
AgsI	TTSAA	6 cut(s)	72, 248, 296, 524, 661, 827
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	6 cut(s)	38, 67, 104, 151, 532, 701
AluI	AGCT	6 cut(s)	38, 67, 104, 151, 532, 701
Alw26I	GTCTC	1 cut(s)	44
ApeKI	GCWGC	2 cut(s)	110, 560
ApoI	RAATTY	1 cut(s)	298
Asp700I	GAANNNNTTC	1 cut(s)	300
AspS9I	GGNCC	3 cut(s)	331, 430, 731
AsuC2I	CCSGG	1 cut(s)	224
AvaII	GGWCC	3 cut(s)	331, 430, 731
BaeGI	GKGCMC	1 cut(s)	445
BaeI	ACNNNNGTAYC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	415
BbvI	GCAGC	2 cut(s)	97, 572
BccI	CCATC	4 cut(s)	244, 432, 442, 703
BciT130I	CCWGG	1 cut(s)	435
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	2 cut(s)	215, 474
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	2 cut(s)	111, 561
BlsI	GCNGC	2 cut(s)	112, 562
Bme1390I	CCNGG	2 cut(s)	224, 435
Bme18I	GGWCC	3 cut(s)	331, 430, 731
BmgT120I	GGNCC	3 cut(s)	331, 430, 731
BmiI	GGNNCC	5 cut(s)	332, 333, 431, 432, 732
BmrFI	CCNGG	2 cut(s)	224, 435
BpiI	GAAGAC	1 cut(s)	415
BpuMI	CCSGG	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	223, 433
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 439
Bse118I	RCCGGY	1 cut(s)	394
Bse3DI	GCAATG	1 cut(s)	555
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	223, 433
BseGI	GGATG	3 cut(s)	391, 443, 714
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	2 cut(s)	347, 439
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	602
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	2 cut(s)	97, 572
BsiSI	CCGG	2 cut(s)	223, 395
BslFI	GGGAC	4 cut(s)	240, 317, 443, 744
BslI	CCNNNNNNNGG	2 cut(s)	347, 439
BsmAI	GTCTC	1 cut(s)	44
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	4 cut(s)	240, 317, 443, 744
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	1 cut(s)	512
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	5 cut(s)	332, 333, 431, 432, 732
BspMAI	CTGCAG	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	555
BsrFI	RCCGGY	1 cut(s)	394
BssAI	RCCGGY	1 cut(s)	394
BssECI	CCNNGG	2 cut(s)	223, 433
BssMI	GATC	1 cut(s)	512
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	764
Bst6I	CTCTTC	2 cut(s)	144, 243
BstC8I	GCNNGC	2 cut(s)	65, 621
BstDEI	CTNAG	2 cut(s)	46, 147
BstF5I	GGATG	3 cut(s)	391, 443, 714
BstKTI	GATC	1 cut(s)	515
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	512
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 776
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	1 cut(s)	12
BstSCI	CCNGG	2 cut(s)	222, 433
BstSFI	CTRYAG	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	445
BstV1I	GCAGC	2 cut(s)	97, 572
BstV2I	GAAGAC	1 cut(s)	415
BtsCI	GGATG	3 cut(s)	391, 443, 714
BtsIMutI	CAGTG	1 cut(s)	443
Cac8I	GCNNGC	2 cut(s)	65, 621
Cfr10I	RCCGGY	1 cut(s)	394
Cfr13I	GGNCC	3 cut(s)	331, 430, 731
CseI	GACGC	1 cut(s)	759
Csp6I	GTAC	2 cut(s)	285, 404
CviAII	CATG	4 cut(s)	9, 76, 787, 800
CviQI	GTAC	2 cut(s)	285, 404
DdeI	CTNAG	2 cut(s)	46, 147
DpnI	GATC	1 cut(s)	514
DpnII	GATC	1 cut(s)	512
Eam1104I	CTCTTC	2 cut(s)	144, 243
EarI	CTCTTC	2 cut(s)	144, 243
Eco47I	GGWCC	3 cut(s)	331, 430, 731
Eco57I	CTGAAG	3 cut(s)	140, 409, 591
EcoO109I	RGGNCCY	3 cut(s)	331, 430, 731
EcoRII	CCWGG	1 cut(s)	433
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	4 cut(s)	12, 79, 790, 803
FaqI	GGGAC	4 cut(s)	240, 317, 443, 744
FatI	CATG	4 cut(s)	8, 75, 786, 799
FblI	GTMKAC	1 cut(s)	773
Fnu4HI	GCNGC	2 cut(s)	111, 561
FokI	GGATG	3 cut(s)	398, 450, 721
Fsp4HI	GCNGC	2 cut(s)	111, 561
FspBI	CTAG	2 cut(s)	215, 474
GluI	GCNGC	2 cut(s)	111, 561
HapII	CCGG	2 cut(s)	223, 395
HgaI	GACGC	1 cut(s)	759
Hin1II	CATG	4 cut(s)	12, 79, 790, 803
HincII	GTYRAC	1 cut(s)	615
HindII	GTYRAC	1 cut(s)	615
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	3 cut(s)	317, 415, 506
HpaI	GTTAAC	1 cut(s)	615
HpaII	CCGG	2 cut(s)	223, 395
Hpy166II	GTNNAC	2 cut(s)	615, 774
Hpy188I	TCNGA	2 cut(s)	159, 610
Hpy188III	TCNNGA	3 cut(s)	41, 383, 510
Hpy8I	GTNNAC	2 cut(s)	615, 774
HpyAV	CCTTC	4 cut(s)	456, 463, 476, 679
HpyCH4III	ACNGT	1 cut(s)	764
HpyCH4IV	ACGT	2 cut(s)	53, 663
HpyCH4V	TGCA	6 cut(s)	63, 79, 113, 560, 691, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 776
HpyF3I	CTNAG	2 cut(s)	46, 147
HpySE526I	ACGT	2 cut(s)	53, 663
Hsp92II	CATG	4 cut(s)	12, 79, 790, 803
KflI	GGGWCCC	2 cut(s)	331, 430
KspAI	GTTAAC	1 cut(s)	615
Kzo9I	GATC	1 cut(s)	512
Lsp1109I	GCAGC	2 cut(s)	97, 572
MaeI	CTAG	2 cut(s)	215, 474
MaeII	ACGT	2 cut(s)	53, 663
MalI	GATC	1 cut(s)	514
MboI	GATC	1 cut(s)	512
MboII	GAAGA	6 cut(s)	131, 146, 260, 415, 594, 597
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	3 cut(s)	25, 298, 685
MnlI	CCTC	4 cut(s)	9, 244, 580, 783
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	4 cut(s)	369, 614, 782, 819
MslI	CAYNNNNRTG	2 cut(s)	765, 804
MspI	CCGG	2 cut(s)	223, 395
MspR9I	CCNGG	2 cut(s)	224, 435
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	2 cut(s)	110, 776
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	1 cut(s)	512
NlaIII	CATG	4 cut(s)	12, 79, 790, 803
NlaIV	GGNNCC	5 cut(s)	332, 333, 431, 432, 732
NspI	RCATGY	1 cut(s)	12
PciI	ACATGT	1 cut(s)	8
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	3 cut(s)	317, 415, 506
PflMI	CCANNNNNTGG	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	112, 562
PpuMI	RGGWCCY	3 cut(s)	331, 430, 731
PscI	ACATGT	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	663
Psp5II	RGGWCCY	3 cut(s)	331, 430, 731
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	5 cut(s)	332, 333, 431, 432, 732
PspPI	GGNCC	3 cut(s)	331, 430, 731
PspPPI	RGGWCCY	3 cut(s)	331, 430, 731
PstI	CTGCAG	1 cut(s)	115
RsaI	GTAC	2 cut(s)	286, 405
RsaNI	GTAC	2 cut(s)	285, 404
RseI	CAYNNNNRTG	2 cut(s)	765, 804
SaqAI	TTAA	4 cut(s)	369, 614, 782, 819
SatI	GCNGC	2 cut(s)	111, 561
Sau3AI	GATC	1 cut(s)	512
Sau96I	GGNCC	3 cut(s)	331, 430, 731
ScrFI	CCNGG	2 cut(s)	224, 435
SduI	GDGCHC	1 cut(s)	445
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	3 cut(s)	331, 430, 731
SmiMI	CAYNNNNRTG	2 cut(s)	765, 804
Sse9I	AATT	3 cut(s)	25, 298, 685
SspMI	CTAG	2 cut(s)	215, 474
StyD4I	CCNGG	2 cut(s)	222, 433
TaaI	ACNGT	1 cut(s)	764
TaiI	ACGT	2 cut(s)	56, 666
TasI	AATT	3 cut(s)	25, 298, 685
TatI	WGTACW	1 cut(s)	284
TfiI	GAWTC	3 cut(s)	317, 415, 506
Tru1I	TTAA	4 cut(s)	369, 614, 782, 819
Tru9I	TTAA	4 cut(s)	369, 614, 782, 819
TscAI	CASTG	1 cut(s)	450
TseI	GCWGC	2 cut(s)	110, 560
TspDTI	ATGAA	4 cut(s)	48, 390, 495, 628
TspGWI	ACGGA	1 cut(s)	721
TspRI	CASTG	1 cut(s)	450
Van91I	CCANNNNNTGG	1 cut(s)	347
VpaK11BI	GGWCC	3 cut(s)	331, 430, 731
XapI	RAATTY	1 cut(s)	298
XceI	RCATGY	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	773
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	2 cut(s)	215, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.