Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009739

Physical Location & Seq

Genomic Coordinates Forward (+)

25955681 .. 25966137

Gene Structure 10457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG256100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAGTTCGGCGGTGCTGAAGGAGAGAAGAAGGCCAAATGCTCTGACTGTGTCCCTTAATTCAAAGATTTACAGAGTCAGCGATAGGCTCTTCCTCTGCCTCTCCGGACTCACCACCGATGCTCAGACTCTTTCTCTGAAACCATTTGGCCTTAGTTCTGAATATTCACGGAAGGCGAGAAATGAAGGTTCTGAGAATGGAAATGTTGAATCAAAATCATACCTTGAAAAGAAGCTCATAGCTACACGAATGGTTATTCAGTATGGGTGGGGACCTGATGATAGTCCTGCAATATATTATCACAGCAATGCGTCTACTGCTTTAAGCATGGGGAATAACCATGAGTATGATATGGCAGTTAAAGTTGAAAAGGAGGAAGGTCTTGGCAAACTTATCGATGTTGGGGACGTTATCGTTCTGAGAGACGTAGATTCCGACCAAAATTTCTTCAAAGTAATCAAAACCCACAACTTGGCAACCATCTTCAATCTCAACTTTGTGAAACCCAAACTGAAAATTAACAAAAACCCACCACACCAAACCCAGAAACCAAAAAGATCACAGATTGAGAGATTGCGACATTGGGAAGTTGGGGCCTTTGGTAGATCGGAGCCTTCCAGGTTGAAAATGATGTCGAACAAGCAAAGCTATAAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

219

Amino Acids

24.88

Weight (kDa)

9.73

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009739)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396731
rosa_roxburghii	Rroxscaffold_3G00239480
rosa_rugosa	Rorug01G0260500 Rorug04G0356400 Rorug05G0382300 Rorug07G0227200
rosa_samantha	Rh2AG227000 Rh2AG341200 Rh2BG289100 Rh2DG234500 Rh2DG284300 Rh4BG374000 Rh4CG211000 Rh4CG387900 Rh5AG167300 Rh6AG410000 Rh6BG118300 Rh6BG323100 Rh6DG105000 Rh7AG256100 Rh7AG478300 Rh7CG272500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	472
AccI	GTMKAC	1 cut(s)	314
AccIII	TCCGGA	1 cut(s)	104
AciI	CCGC	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	442
AcuI	CTGAAG	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	472
AgsI	TTSAA	7 cut(s)	63, 209, 227, 368, 451, 487, 625
AjnI	CCWGG	1 cut(s)	617
AluBI	AGCT	3 cut(s)	235, 242, 648
AluI	AGCT	3 cut(s)	235, 242, 648
Alw26I	GTCTC	1 cut(s)	417
Aor13HI	TCCGGA	1 cut(s)	104
AoxI	GGCC	3 cut(s)	32, 148, 594
ApoI	RAATTY	1 cut(s)	442
AspS9I	GGNCC	2 cut(s)	272, 594
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	272
BccI	CCATC	1 cut(s)	488
BcgI	CGANNNNNNTGC	2 cut(s)	376, 410
BciT130I	CCWGG	1 cut(s)	619
BcoDI	GTCTC	1 cut(s)	417
Bme1390I	CCNGG	1 cut(s)	619
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	272, 594
BmiI	GGNNCC	3 cut(s)	273, 595, 612
BmrFI	CCNGG	1 cut(s)	619
BmsI	GCATC	1 cut(s)	109
Bsa29I	ATCGAT	1 cut(s)	396
BsaWI	WCCGGW	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
Bse3DI	GCAATG	1 cut(s)	313
BseAI	TCCGGA	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	619
BseCI	ATCGAT	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	3 cut(s)	137, 183, 410
BshFI	GGCC	3 cut(s)	34, 150, 596
BshVI	ATCGAT	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	3 cut(s)	37, 285, 419
BslI	CCNNNNNNNGG	1 cut(s)	472
BsmAI	GTCTC	1 cut(s)	417
BsmBI	CGTCTC	1 cut(s)	417
BsmFI	GGGAC	3 cut(s)	37, 285, 419
BsnI	GGCC	3 cut(s)	34, 150, 596
Bsp13I	TCCGGA	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	557, 605
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	3 cut(s)	34, 150, 596
BspCNI	CTCAG	3 cut(s)	136, 184, 411
BspDI	ATCGAT	1 cut(s)	396
BspEI	TCCGGA	1 cut(s)	104
BspLI	GGNNCC	3 cut(s)	273, 595, 612
BspQI	GCTCTTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	313
BssMI	GATC	2 cut(s)	557, 605
Bst2UI	CCWGG	1 cut(s)	619
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	95
BstDEI	CTNAG	4 cut(s)	123, 152, 192, 419
BstKTI	GATC	2 cut(s)	560, 608
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	2 cut(s)	557, 605
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	1 cut(s)	619
BstSCI	CCNGG	1 cut(s)	617
Bsu15I	ATCGAT	1 cut(s)	396
BsuRI	GGCC	3 cut(s)	34, 150, 596
BsuTUI	ATCGAT	1 cut(s)	396
Cfr13I	GGNCC	2 cut(s)	272, 594
ClaI	ATCGAT	1 cut(s)	396
CseI	GACGC	1 cut(s)	300
CviAII	CATG	2 cut(s)	328, 341
CviJI	RGCY	8 cut(s)	34, 88, 150, 235, 242, 596, 613, 648
CviKI_1	RGCY	8 cut(s)	34, 88, 150, 235, 242, 596, 613, 648
DdeI	CTNAG	4 cut(s)	123, 152, 192, 419
DpnI	GATC	2 cut(s)	559, 607
DpnII	GATC	2 cut(s)	557, 605
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	38
EcoO109I	RGGNCCY	2 cut(s)	272, 594
EcoRII	CCWGG	1 cut(s)	617
Esp3I	CGTCTC	1 cut(s)	417
FaeI	CATG	2 cut(s)	331, 344
FaqI	GGGAC	3 cut(s)	37, 285, 419
FatI	CATG	2 cut(s)	327, 340
FblI	GTMKAC	1 cut(s)	314
HaeIII	GGCC	3 cut(s)	34, 150, 596
HapII	CCGG	1 cut(s)	105
HgaI	GACGC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	331, 344
HinfI	GANTC	5 cut(s)	75, 108, 127, 209, 431
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	8 cut(s)	45, 126, 138, 160, 193, 420, 436, 610
Hpy188III	TCNNGA	1 cut(s)	105
Hpy8I	GTNNAC	1 cut(s)	315
HpyAV	CCTTC	6 cut(s)	13, 24, 166, 179, 371, 624
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	2 cut(s)	408, 426
HpyCH4V	TGCA	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	4 cut(s)	123, 152, 192, 419
HpySE526I	ACGT	2 cut(s)	408, 426
Hsp92II	CATG	2 cut(s)	331, 344
Kpn2I	TCCGGA	1 cut(s)	104
Kzo9I	GATC	2 cut(s)	557, 605
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	1 cut(s)	610
LpnPI	CCDG	6 cut(s)	118, 288, 300, 557, 604, 631
LweI	GCATC	1 cut(s)	109
MaeII	ACGT	2 cut(s)	408, 426
MalI	GATC	2 cut(s)	559, 607
MboI	GATC	2 cut(s)	557, 605
MboII	GAAGA	4 cut(s)	39, 82, 439, 475
MluCI	AATT	3 cut(s)	58, 442, 516
MlyI	GAGTC	3 cut(s)	84, 102, 121
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	3 cut(s)	104, 110, 367
MroI	TCCGGA	1 cut(s)	104
MseI	TTAA	4 cut(s)	57, 323, 360, 519
MslI	CAYNNNNRTG	2 cut(s)	306, 345
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	619
MvaI	CCWGG	1 cut(s)	619
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeII	GATC	2 cut(s)	557, 605
NlaIII	CATG	2 cut(s)	331, 344
NlaIV	GGNNCC	3 cut(s)	273, 595, 612
PciSI	GCTCTTC	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	209, 431
PflFI	GACNNNGTC	1 cut(s)	49
PflMI	CCANNNNNTGG	1 cut(s)	472
PleI	GAGTC	3 cut(s)	83, 102, 121
PpsI	GAGTC	3 cut(s)	83, 102, 121
PpuMI	RGGWCCY	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	617
PspN4I	GGNNCC	3 cut(s)	273, 595, 612
PspPI	GGNCC	2 cut(s)	272, 594
PspPPI	RGGWCCY	1 cut(s)	272
PsyI	GACNNNGTC	1 cut(s)	49
RseI	CAYNNNNRTG	2 cut(s)	306, 345
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	4 cut(s)	57, 323, 360, 519
Sau3AI	GATC	2 cut(s)	557, 605
Sau96I	GGNCC	2 cut(s)	272, 594
SchI	GAGTC	3 cut(s)	84, 102, 121
ScrFI	CCNGG	1 cut(s)	619
SfaNI	GCATC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	306, 345
Sse9I	AATT	3 cut(s)	58, 442, 516
SsiI	CCGC	1 cut(s)	11
SspI	AATATT	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	617
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	2 cut(s)	411, 429
TaqI	TCGA	2 cut(s)	396, 635
TasI	AATT	3 cut(s)	58, 442, 516
TfiI	GAWTC	2 cut(s)	209, 431
Tru1I	TTAA	4 cut(s)	57, 323, 360, 519
Tru9I	TTAA	4 cut(s)	57, 323, 360, 519
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	1 cut(s)	184
Tth111I	GACNNNGTC	1 cut(s)	49
Van91I	CCANNNNNTGG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.