AT1G01650

Signal peptide peptidase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
232840 .. 237905
5066 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01650.1

Sequence Viewer

Length: 1623 bp
ATGATCTTGTGGAAATCTCTCAGTTGTTTCTCGTTCGTCTTCGGGTTGTTGTTGTACAGTGCTAGTTTCGTTTGTGCTGGAGACATAGTTCACCACGACGATTCGCTTCCGCAGAGACCTGGTTGCAACAACAATTTCGTTCTGGTGAAAGTCCCAACTCGAGTCAATGGGTCGGAGTACACGGAGTATGTTGGTGTTGGTGCTAGGTTTGGCCCAACCTTGGAATCTAAGGAGAAACATGCTACCCTCATCAAACTTGCTATTGCTGACCCTCCTGATTGTTGCAGCACTCCCAAAAATAAGCTTACAGGAGAGGTCATTCTTGTTCATCGTGGTAAATGCAGTTTTACCACCAAAACTAAGGTTGCTGAAGCAGCTGGTGCCTCTGCCATCCTTATCATAAACAACAGTACAGATCTTTTCAAGATGGTCTGCGAGAAGGGTGAAAACGTTTTAGATATTACTATTCCTGTTGTTATGCTACCTGTTGATGCTGGTAGAAGTCTGGAGAACATAGTCAAAAGTAACGCTATAGTTACTCTGCAGCTCTACTCGCCGAAACGTCCAGCAGTTGATGTGGCTGAGGTCTTTCTTTGGCTTATGGCTGTCGGTACCATTTTATGTGCTTCTTATTGGTCTGCGTGGACCGTCAGGGAAGAAGCTATTGAGCAAGACAAGCTGCTAAAGGACGGATCAGATGAACTTTTGCAGTTATCAACCACCAGCTCTAGAGGTGTTGTTGAGGTCACCGTGATATCAGCAATTTTGTTTGTAGTGGTGGCTTCTTGTTTCCTGATCATGCTCTACAAGCTTATGTCATTCTGGTTTATAGAGGTGTTGGTGGTACTCTTTTGCATAGGTGGCGTAGAGGGGCTGCAAACTTGTTTGGTCTCTCTACTCTCATGTTTCAGATGGTTCCGCCGCTTTGGAGAATCATATGTCAAAGTTCCTTTCCTGGGTGCTGTCTCATACTTGACTCTGGCTATTTGTCCCTTTTGCATAGCATTTGCTGTATTTTGGGCGGTTAAACGTCAATACTCTTATGCTTGGATAGGGCAAGATATACTTGGAATCTCACTGATAATCACGGTTCTTCAAATTGTCCGCGTACCAAATCTTAAGGTCGGGTTTGTTCTTCTCAGCTGTGCCTTCATGTATGACATCTTCTGGGTTTTTGTTTCAAAATGGTGGTTCCGTGAAAGCGTGATGATTGTGGTAGCCCGTGGTGACAGAAGCGGAGAGGACGGAATTCCAATGCTACTAAAGATCCCACGAATGTTTGATCCTTGGGGTGGCTACAGCATAATTGGATTTGGTGACATTATCTTACCAGGACTGCTTGTAACTTTCGCACTGAGGTACGACTGGCTGGCGAACAAGAGGCTAAAGTCAGGGTACTTCCTTGGGACAATGTCTGCTTATGGTCTAGGTCTTCTCATAACATACATAGCTCTAAACTTGATGGACGGACATGGGCAACCGGCTCTGCTTTACATCGTCCCATTCATACTAGGTACTTTGTTCGTGTTGGGTCACAAGAGAGGTGACTTGAAGACGCTGTGGACAACAGGGGAACCCGACAGGCCATGCCCTCACGTTCGTCTTCAACCTCAATCGTCTTAA

Protein Analysis

540

Amino Acids

59.97

Weight (kDa)

8.38

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 91 - 169 1e-12 PA domain
Peptidase_A22B PF04258 243 - 525 1.2e-103 Signal peptide peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 611
AccB1I GGYRCC 2 cut(s) 380, 611
AccII CGCG 1 cut(s) 1107
AciI CCGC 6 cut(s) 110, 919, 922, 1022, 1105, 1236
AclI AACGTT 1 cut(s) 450
AclWI GGATC 3 cut(s) 700, 1261, 1277
AcsI RAATTY 1 cut(s) 1248
AcuI CTGAAG 1 cut(s) 390
AfaI GTAC 9 cut(s) 56, 179, 412, 613, 846, 1110, 1361, 1397, 1516
AfiI CCNNNNNNNGG 3 cut(s) 220, 956, 1292
AflII CTTAAG 1 cut(s) 1118
AgsI TTSAA 5 cut(s) 424, 1097, 1182, 1552, 1607
AjnI CCWGG 3 cut(s) 118, 954, 1330
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AluBI AGCT 9 cut(s) 304, 377, 547, 662, 679, 726, 811, 1143, 1451
AluI AGCT 9 cut(s) 304, 377, 547, 662, 679, 726, 811, 1143, 1451
Alw26I GTCTC 4 cut(s) 75, 109, 895, 970
AlwI GGATC 3 cut(s) 700, 1261, 1277
Ama87I CYCGRG 1 cut(s) 159
AoxI GGCC 2 cut(s) 211, 1583
ApeKI GCWGC 5 cut(s) 285, 374, 544, 679, 874
ApoI RAATTY 1 cut(s) 1248
Asp718I GGTACC 1 cut(s) 611
AspS9I GGNCC 2 cut(s) 212, 645
AsuHPI GGTGA 7 cut(s) 83, 157, 455, 739, 1238, 1328, 1556
AvaI CYCGRG 1 cut(s) 159
AvaII GGWCC 1 cut(s) 645
BanI GGYRCC 2 cut(s) 380, 611
BarI GAAGNNNNNNTAC 2 cut(s) 1148, 1180
BbsI GAAGAC 4 cut(s) 31, 1424, 1559, 1595
BbvCI CCTCAGC 1 cut(s) 582
BbvI GCAGC 5 cut(s) 297, 386, 556, 666, 861
BccI CCATC 4 cut(s) 398, 421, 906, 1456
BciT130I CCWGG 3 cut(s) 120, 956, 1332
BclI TGATCA 1 cut(s) 795
BcoDI GTCTC 4 cut(s) 75, 109, 895, 970
BfaI CTAG 5 cut(s) 63, 204, 729, 1427, 1511
BfmI CTRYAG 3 cut(s) 531, 542, 1297
BfrI CTTAAG 1 cut(s) 1118
BglII AGATCT 1 cut(s) 415
BisI GCNGC 6 cut(s) 286, 375, 545, 680, 875, 922
BlsI GCNGC 6 cut(s) 287, 376, 546, 681, 876, 923
Bme1390I CCNGG 3 cut(s) 120, 956, 1332
Bme18I GGWCC 1 cut(s) 645
BmeT110I CYCGRG 1 cut(s) 159
BmgT120I GGNCC 2 cut(s) 212, 645
BmiI GGNNCC 5 cut(s) 382, 613, 917, 1193, 1575
BmrFI CCNGG 3 cut(s) 120, 956, 1332
BmsI GCATC 1 cut(s) 481
BpiI GAAGAC 4 cut(s) 31, 1424, 1559, 1595
BpmI CTGGAG 2 cut(s) 99, 527
Bpu10I CCTNAGC 1 cut(s) 582
BsaI GGTCTC 2 cut(s) 109, 895
BsaJI CCNNGG 5 cut(s) 219, 955, 1222, 1286, 1402
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 956, 1292
Bse118I RCCGGY 1 cut(s) 1480
Bse1I ACTGG 1 cut(s) 1370
BseBI CCWGG 3 cut(s) 120, 956, 1332
BseDI CCNNGG 5 cut(s) 219, 955, 1222, 1286, 1402
BseGI GGATG 1 cut(s) 390
BseLI CCNNNNNNNGG 3 cut(s) 220, 956, 1292
BseMII CTCAG 4 cut(s) 34, 573, 1153, 1346
BseNI ACTGG 1 cut(s) 1370
BseXI GCAGC 5 cut(s) 297, 386, 556, 666, 861
Bsh1236I CGCG 1 cut(s) 1107
BshFI GGCC 2 cut(s) 213, 1585
BshNI GGYRCC 2 cut(s) 380, 611
BsiHKCI CYCGRG 1 cut(s) 159
BsiSI CCGG 1 cut(s) 1481
BslFI GGGAC 4 cut(s) 137, 975, 1420, 1484
BslI CCNNNNNNNGG 3 cut(s) 220, 956, 1292
BsmAI GTCTC 4 cut(s) 75, 109, 895, 970
BsmFI GGGAC 4 cut(s) 137, 975, 1420, 1484
BsnI GGCC 2 cut(s) 213, 1585
Bso31I GGTCTC 2 cut(s) 109, 895
BsoBI CYCGRG 1 cut(s) 159
Bsp1407I TGTACA 1 cut(s) 54
Bsp143I GATC 6 cut(s) 3, 415, 692, 795, 1266, 1282
BspACI CCGC 6 cut(s) 110, 919, 922, 1022, 1105, 1236
BspANI GGCC 2 cut(s) 213, 1585
BspCNI CTCAG 4 cut(s) 33, 574, 1152, 1347
BspFNI CGCG 1 cut(s) 1107
BspLI GGNNCC 5 cut(s) 382, 613, 917, 1193, 1575
BspMAI CTGCAG 1 cut(s) 546
BspPI GGATC 3 cut(s) 700, 1261, 1277
BspT107I GGYRCC 2 cut(s) 380, 611
BspTI CTTAAG 1 cut(s) 1118
BspTNI GGTCTC 2 cut(s) 109, 895
BsrFI RCCGGY 1 cut(s) 1480
BsrGI TGTACA 1 cut(s) 54
BsrI ACTGG 1 cut(s) 1370
BssAI RCCGGY 1 cut(s) 1480
BssECI CCNNGG 5 cut(s) 219, 955, 1222, 1286, 1402
BssMI GATC 6 cut(s) 3, 415, 692, 795, 1266, 1282
BssT1I CCWWGG 3 cut(s) 219, 1286, 1402
Bst2UI CCWGG 3 cut(s) 120, 956, 1332
Bst4CI ACNGT 5 cut(s) 59, 410, 649, 751, 1090
BstAFI CTTAAG 1 cut(s) 1118
BstAPI GCANNNNNTGC 1 cut(s) 380
BstAUI TGTACA 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 1371
BstDEI CTNAG 6 cut(s) 20, 228, 360, 582, 1139, 1355
BstDSI CCRYGG 1 cut(s) 1222
BstEII GGTNACC 1 cut(s) 745
BstF5I GGATG 1 cut(s) 390
BstFNI CGCG 1 cut(s) 1107
BstKTI GATC 6 cut(s) 6, 418, 695, 798, 1269, 1285
BstMAI GTCTC 4 cut(s) 75, 109, 895, 970
BstMBI GATC 6 cut(s) 3, 415, 692, 795, 1266, 1282
BstMWI GCNNNNNNNGC 6 cut(s) 374, 380, 553, 676, 808, 861
BstNI CCWGG 3 cut(s) 120, 956, 1332
BstNSI RCATGY 1 cut(s) 242
BstPI GGTNACC 1 cut(s) 745
BstSCI CCNGG 3 cut(s) 118, 954, 1330
BstSFI CTRYAG 3 cut(s) 531, 542, 1297
BstUI CGCG 1 cut(s) 1107
BstV1I GCAGC 5 cut(s) 297, 386, 556, 666, 861
BstV2I GAAGAC 4 cut(s) 31, 1424, 1559, 1595
BstX2I RGATCY 2 cut(s) 415, 1266
BstYI RGATCY 2 cut(s) 415, 1266
BsuRI GGCC 2 cut(s) 213, 1585
BtgI CCRYGG 1 cut(s) 1222
BtsCI GGATG 1 cut(s) 390
BtsIMutI CAGTG 3 cut(s) 64, 1076, 1352
Cac8I GCNNGC 1 cut(s) 1371
Cfr10I RCCGGY 1 cut(s) 1480
Cfr13I GGNCC 2 cut(s) 212, 645
CseI GACGC 1 cut(s) 1564
CsiI ACCWGGT 1 cut(s) 118
Csp6I GTAC 9 cut(s) 55, 178, 411, 612, 845, 1109, 1360, 1396, 1515
CviAII CATG 6 cut(s) 239, 799, 903, 1153, 1472, 1587
CviQI GTAC 9 cut(s) 55, 178, 411, 612, 845, 1109, 1360, 1396, 1515
DdeI CTNAG 6 cut(s) 20, 228, 360, 582, 1139, 1355
DpnI GATC 6 cut(s) 5, 417, 694, 797, 1268, 1284
DpnII GATC 6 cut(s) 3, 415, 692, 795, 1266, 1282
EciI GGCGGA 1 cut(s) 908
Eco130I CCWWGG 3 cut(s) 219, 1286, 1402
Eco31I GGTCTC 2 cut(s) 109, 895
Eco32I GATATC 1 cut(s) 756
Eco47I GGWCC 1 cut(s) 645
Eco57I CTGAAG 1 cut(s) 390
Eco88I CYCGRG 1 cut(s) 159
Eco91I GGTNACC 1 cut(s) 745
EcoO65I GGTNACC 1 cut(s) 745
EcoRI GAATTC 1 cut(s) 1248
EcoRII CCWGG 3 cut(s) 118, 954, 1330
EcoRV GATATC 1 cut(s) 756
EcoT14I CCWWGG 3 cut(s) 219, 1286, 1402
ErhI CCWWGG 3 cut(s) 219, 1286, 1402
FaeI CATG 6 cut(s) 242, 802, 906, 1156, 1475, 1590
FalI AAGNNNNNCTT 2 cut(s) 1050, 1082
FaqI GGGAC 4 cut(s) 137, 975, 1420, 1484
FatI CATG 6 cut(s) 238, 798, 902, 1152, 1471, 1586
FauNDI CATATG 1 cut(s) 937
FbaI TGATCA 1 cut(s) 795
Fnu4HI GCNGC 6 cut(s) 286, 375, 545, 680, 875, 922
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 6 cut(s) 286, 375, 545, 680, 875, 922
FspBI CTAG 5 cut(s) 63, 204, 729, 1427, 1511
GluI GCNGC 6 cut(s) 286, 375, 545, 680, 875, 922
GsuI CTGGAG 2 cut(s) 99, 527
HaeIII GGCC 2 cut(s) 213, 1585
HapII CCGG 1 cut(s) 1481
HgaI GACGC 1 cut(s) 1564
Hin1II CATG 6 cut(s) 242, 802, 906, 1156, 1475, 1590
HindIII AAGCTT 2 cut(s) 302, 809
HinfI GANTC 6 cut(s) 101, 162, 224, 932, 976, 1071
HpaII CCGG 1 cut(s) 1481
HphI GGTGA 7 cut(s) 83, 157, 455, 739, 1238, 1328, 1556
Hpy166II GTNNAC 4 cut(s) 91, 180, 645, 1563
Hpy188I TCNGA 3 cut(s) 175, 697, 911
Hpy188III TCNNGA 5 cut(s) 275, 424, 506, 729, 793
Hpy8I GTNNAC 4 cut(s) 91, 180, 645, 1563
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 433, 1159
HpyCH4III ACNGT 5 cut(s) 59, 410, 649, 751, 1090
HpyCH4IV ACGT 4 cut(s) 450, 562, 1030, 1596
HpyCH4V TGCA 8 cut(s) 126, 285, 342, 544, 709, 855, 877, 999
HpyF10VI GCNNNNNNNGC 6 cut(s) 374, 380, 553, 676, 808, 861
HpyF3I CTNAG 6 cut(s) 20, 228, 360, 582, 1139, 1355
HpySE526I ACGT 4 cut(s) 450, 562, 1030, 1596
Hsp92II CATG 6 cut(s) 242, 802, 906, 1156, 1475, 1590
KpnI GGTACC 1 cut(s) 615
Ksp22I TGATCA 1 cut(s) 795
Kzo9I GATC 6 cut(s) 3, 415, 692, 795, 1266, 1282
Lsp1109I GCAGC 5 cut(s) 297, 386, 556, 666, 861
LweI GCATC 1 cut(s) 481
MabI ACCWGGT 1 cut(s) 118
MaeI CTAG 5 cut(s) 63, 204, 729, 1427, 1511
MaeII ACGT 4 cut(s) 450, 562, 1030, 1596
MaeIII GTNAC 8 cut(s) 524, 535, 745, 1226, 1316, 1342, 1532, 1544
MalI GATC 6 cut(s) 5, 417, 694, 797, 1268, 1284
MboI GATC 6 cut(s) 3, 415, 692, 795, 1266, 1282
MboII GAAGA 8 cut(s) 31, 668, 1085, 1127, 1156, 1424, 1564, 1595
MflI RGATCY 2 cut(s) 415, 1266
MluCI AATT 5 cut(s) 133, 762, 1098, 1248, 1305
MlyI GAGTC 2 cut(s) 171, 970
MmeI TCCRAC 1 cut(s) 153
MseI TTAA 3 cut(s) 1026, 1119, 1621
MspA1I CMGCKG 2 cut(s) 377, 1143
MspCI CTTAAG 1 cut(s) 1118
MspI CCGG 1 cut(s) 1481
MspR9I CCNGG 3 cut(s) 120, 956, 1332
MvaI CCWGG 3 cut(s) 120, 956, 1332
MvnI CGCG 1 cut(s) 1107
MwoI GCNNNNNNNGC 6 cut(s) 374, 380, 553, 676, 808, 861
NdeI CATATG 1 cut(s) 937
NdeII GATC 6 cut(s) 3, 415, 692, 795, 1266, 1282
NlaIII CATG 6 cut(s) 242, 802, 906, 1156, 1475, 1590
NlaIV GGNNCC 5 cut(s) 382, 613, 917, 1193, 1575
NmuCI GTSAC 5 cut(s) 745, 1226, 1316, 1532, 1544
NspI RCATGY 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 159
PfeI GAWTC 4 cut(s) 101, 224, 932, 1071
PflFI GACNNNGTC 1 cut(s) 1411
PkrI GCNGC 6 cut(s) 287, 376, 546, 681, 876, 923
PleI GAGTC 2 cut(s) 170, 970
PpsI GAGTC 2 cut(s) 170, 970
Psp1406I AACGTT 1 cut(s) 450
Psp6I CCWGG 3 cut(s) 118, 954, 1330
PspEI GGTNACC 1 cut(s) 745
PspGI CCWGG 3 cut(s) 118, 954, 1330
PspN4I GGNNCC 5 cut(s) 382, 613, 917, 1193, 1575
PspPI GGNCC 2 cut(s) 212, 645
PspXI VCTCGAGB 1 cut(s) 159
PstI CTGCAG 1 cut(s) 546
PsuI RGATCY 2 cut(s) 415, 1266
PsyI GACNNNGTC 1 cut(s) 1411
PvuII CAGCTG 2 cut(s) 377, 1143
RsaI GTAC 9 cut(s) 56, 179, 412, 613, 846, 1110, 1361, 1397, 1516
RsaNI GTAC 9 cut(s) 55, 178, 411, 612, 845, 1109, 1360, 1396, 1515
SaqAI TTAA 3 cut(s) 1026, 1119, 1621
SatI GCNGC 6 cut(s) 286, 375, 545, 680, 875, 922
Sau3AI GATC 6 cut(s) 3, 415, 692, 795, 1266, 1282
Sau96I GGNCC 2 cut(s) 212, 645
SchI GAGTC 2 cut(s) 171, 970
ScrFI CCNGG 3 cut(s) 120, 956, 1332
SexAI ACCWGGT 1 cut(s) 118
SfaNI GCATC 1 cut(s) 481
SfcI CTRYAG 3 cut(s) 531, 542, 1297
Sfr274I CTCGAG 1 cut(s) 159
SinI GGWCC 1 cut(s) 645
SlaI CTCGAG 1 cut(s) 159
SmlI CTYRAG 2 cut(s) 159, 1118
SmoI CTYRAG 2 cut(s) 159, 1118
Sse9I AATT 5 cut(s) 133, 762, 1098, 1248, 1305
SsiI CCGC 6 cut(s) 110, 919, 922, 1022, 1105, 1236
SspMI CTAG 5 cut(s) 63, 204, 729, 1427, 1511
StyD4I CCNGG 3 cut(s) 118, 954, 1330
StyI CCWWGG 3 cut(s) 219, 1286, 1402
TaaI ACNGT 5 cut(s) 59, 410, 649, 751, 1090
TaiI ACGT 4 cut(s) 453, 565, 1033, 1599
TaqI TCGA 1 cut(s) 160
TasI AATT 5 cut(s) 133, 762, 1098, 1248, 1305
TatI WGTACW 3 cut(s) 54, 177, 410
TauI GCSGC 1 cut(s) 924
TfiI GAWTC 4 cut(s) 101, 224, 932, 1071
Tru1I TTAA 3 cut(s) 1026, 1119, 1621
Tru9I TTAA 3 cut(s) 1026, 1119, 1621
TscAI CASTG 3 cut(s) 64, 1083, 1359
TseFI GTSAC 5 cut(s) 745, 1226, 1316, 1532, 1544
TseI GCWGC 5 cut(s) 285, 374, 544, 679, 874
Tsp45I GTSAC 5 cut(s) 745, 1226, 1316, 1532, 1544
TspDTI ATGAA 4 cut(s) 317, 714, 1141, 1495
TspGWI ACGGA 5 cut(s) 197, 705, 1184, 1260, 1482
TspRI CASTG 3 cut(s) 64, 1083, 1359
Tth111I GACNNNGTC 1 cut(s) 1411
Vha464I CTTAAG 1 cut(s) 1118
VpaK11BI GGWCC 1 cut(s) 645
XapI RAATTY 1 cut(s) 1248
XbaI TCTAGA 1 cut(s) 728
XceI RCATGY 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 159
XspI CTAG 5 cut(s) 63, 204, 729, 1427, 1511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.