Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002300

Physical Location & Seq

Genomic Coordinates Forward (+)

47827530 .. 47834656

Gene Structure 7127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG259500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGTTTGTGAAGACGACGAGCCTGATGTCGAGATAGGCATACCTGCCGTTATGCTTCCCAACAAAATTGGTGAAATCTTGGAAAATGGATTAACGAACAATTCCATAGTTTCTGTGCAGCTATATTCTCCATTGCGTCCACTGGTTGACATTGCAGAAGTATTTTTATGGCTTATGGCTGTTGGTACCATCTTATTTGCTTCTTATTGGTCTGCATGGACTGCAAGAGAAGCAGCTATTGAGCATGACAAGCTATTGAAGGATGCTTCTGACGAGTCTTCACATGTGGAAGGTGAAAGTACCAGTCCTCTAGGGGAGATTAGCACCATGGCAGCAATTCTCTTTGTTGTGATTGCTTCATGCTTCTTGGTTATGTTTTACAAACTTATGTCCTTCTGGTTCATCGAGATTCTGGTGGTTTTGTTTTGCATTGGTGGGATAGAGGTGCCCTTCTTTGGAGCTGTTTCATATTTGACACTAGCTGTCGCTCCCTTCTGCATAGCATTTGCTGTTGTTTGGGCAGTGAATCGCCATGTGTCATTTGCTTGGATTGGCCAAGATATCCTTGGTATTGCACTGATAATCACCGTTCTTCAGATTGTTCGCGTACCAAATCTCAAGGTTGGAACAGTTCTTCTCGGTTGTGCCTTTTTTTATGACATCTTCTGGGTATTTGTTTCTAAATGGTGGTTCAATGAGAGTGTCATGATAGTGGTGGCTCGTGGTGATAAAAGTGGAGAGGATGGTATCCCAATGCTACTAAAAATCCCACGGATGTTTGATCCTTGGGGTGGCTACAGCATCATCGGGTTTGGTGATATTATCTTACCTGGATTGGTTGTAGCCTTTTCACTAAGGTATGATTGGTTGACAAATAAGACTCTTCGAACGGGTTACTTTGTGTGGGCAATGACAGCTTATGGTGCAGGTCTCCTGGTCACCTATGTGGCTTTGAACTTGATGGATGGACATGGCCAACCTGCTTTGTTATACATAGTTCCATTCACACTTGGGTACCTTCTTAACCTTGGGACAGATGAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

348

Amino Acids

38.58

Weight (kDa)

4.57

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_A22B	PF04258	103 - 148	2.4e-06	Signal peptide peptidase
Peptidase_A22B	PF04258	149 - 343	2.6e-79	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01650 AT1G01650 AT1G01650 AT1G01650
fragaria_vesca	FvH4_7g14350 FvH4_7g14350 FvH4_7g14350 FvH4_7g14350 FvH4_7g14350
malus_domestica	MD01G1061500.v1.1 MD07G1136600.v1.1
prunus_persica	Prupe.2G171000_v2.0.a1 Prupe.2G171000_v2.0.a1
pyrus_communis	pycom01g09170 pycom07g13430
rosa_chinensis	RchiOBHm_Chr1g0355371
rosa_laevigata	RLG00000028134 RLG00000028139 RLG00000028145 RLG00000028149
rosa_multiflora	Rmu_sc0004484.1_g000010 Rmu_sc0021229.1_g000001
rosa_roxburghii	Rroxscaffold_4G00300080 Rroxscaffold_4G00300120 Rroxscaffold_4G00300280 Rroxscaffold_4G00300370 Rroxscaffold_4G00300460
rosa_rugosa	Rorug01G0246900
rosa_samantha	Rh1AG259400 Rh1AG259500 Rh1AG259800 Rh1AG260300 Rh1AG260900 Rh1BG229000 Rh1BG229200 Rh1CG243400 Rh1CG243500 Rh1DG256900
rosa_wichuraiana	Rw1G020180 Rw1G022870 Rw1G022900 Rw1G022920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	52, 917, 988
Acc65I	GGTACC	2 cut(s)	185, 1014
AccB1I	GGYRCC	3 cut(s)	185, 445, 1014
AccII	CGCG	1 cut(s)	606
AclWI	GGATC	1 cut(s)	776
AcoI	YGGCCR	2 cut(s)	553, 973
AcuI	CTGAAG	1 cut(s)	578
AfaI	GTAC	4 cut(s)	187, 301, 609, 1016
AfiI	CCNNNNNNNGG	2 cut(s)	455, 791
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	259, 694, 955
AjnI	CCWGG	2 cut(s)	829, 933
AleI	CACNNNNGTG	1 cut(s)	944
AluBI	AGCT	6 cut(s)	121, 236, 253, 461, 482, 917
AluI	AGCT	6 cut(s)	121, 236, 253, 461, 482, 917
Alw26I	GTCTC	1 cut(s)	935
AlwI	GGATC	1 cut(s)	776
AoxI	GGCC	2 cut(s)	553, 973
ApeKI	GCWGC	3 cut(s)	118, 233, 332
Asp718I	GGTACC	2 cut(s)	185, 1014
AsuHPI	GGTGA	6 cut(s)	83, 305, 577, 737, 827, 931
AsuII	TTCGAA	1 cut(s)	886
BaeGI	GKGCMC	1 cut(s)	450
BaeI	ACNNNNGTAYC	2 cut(s)	998, 1031
BalI	TGGCCA	2 cut(s)	555, 975
BanI	GGYRCC	3 cut(s)	185, 445, 1014
BauI	CACGAG	1 cut(s)	720
BbsI	GAAGAC	2 cut(s)	18, 270
BbvI	GCAGC	3 cut(s)	130, 245, 344
BccI	CCATC	4 cut(s)	197, 737, 955, 959
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	2 cut(s)	831, 935
BciVI	GTATCC	1 cut(s)	758
BcoDI	GTCTC	1 cut(s)	935
BfaI	CTAG	2 cut(s)	311, 479
BfmI	CTRYAG	1 cut(s)	796
BfuAI	ACCTGC	3 cut(s)	52, 917, 988
BfuI	GTATCC	1 cut(s)	758
BisI	GCNGC	3 cut(s)	119, 234, 333
BlsI	GCNGC	3 cut(s)	120, 235, 334
Bme1390I	CCNGG	2 cut(s)	831, 935
BmiI	GGNNCC	3 cut(s)	187, 447, 1016
BmrFI	CCNGG	2 cut(s)	831, 935
BmsI	GCATC	2 cut(s)	253, 810
BpiI	GAAGAC	2 cut(s)	18, 270
Bpu14I	TTCGAA	1 cut(s)	886
BpuEI	CTTGAG	1 cut(s)	602
BsaI	GGTCTC	1 cut(s)	935
BsaJI	CCNNGG	5 cut(s)	327, 565, 770, 785, 1027
Bsc4I	CCNNNNNNNGG	2 cut(s)	455, 791
Bse1I	ACTGG	2 cut(s)	147, 303
Bse3DI	GCAATG	3 cut(s)	131, 150, 915
BseBI	CCWGG	2 cut(s)	831, 935
BseDI	CCNNGG	5 cut(s)	327, 565, 770, 785, 1027
BseGI	GGATG	4 cut(s)	268, 748, 780, 970
BseLI	CCNNNNNNNGG	2 cut(s)	455, 791
BseMI	GCAATG	3 cut(s)	131, 150, 915
BseNI	ACTGG	2 cut(s)	147, 303
BseSI	GKGCMC	1 cut(s)	450
BseXI	GCAGC	3 cut(s)	130, 245, 344
BsgI	GTGCAG	2 cut(s)	137, 945
Bsh1236I	CGCG	1 cut(s)	606
BshFI	GGCC	2 cut(s)	555, 975
BshNI	GGYRCC	3 cut(s)	185, 445, 1014
BslI	CCNNNNNNNGG	2 cut(s)	455, 791
BsmAI	GTCTC	1 cut(s)	935
BsnI	GGCC	2 cut(s)	555, 975
Bso31I	GGTCTC	1 cut(s)	935
Bsp119I	TTCGAA	1 cut(s)	886
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	1 cut(s)	781
Bsp19I	CCATGG	1 cut(s)	327
BspANI	GGCC	2 cut(s)	555, 975
BspFNI	CGCG	1 cut(s)	606
BspHI	TCATGA	1 cut(s)	705
BspLI	GGNNCC	3 cut(s)	187, 447, 1016
BspMI	ACCTGC	3 cut(s)	52, 917, 988
BspPI	GGATC	1 cut(s)	776
BspT104I	TTCGAA	1 cut(s)	886
BspT107I	GGYRCC	3 cut(s)	185, 445, 1014
BspTNI	GGTCTC	1 cut(s)	935
BsrDI	GCAATG	3 cut(s)	131, 150, 915
BsrI	ACTGG	2 cut(s)	147, 303
BssECI	CCNNGG	5 cut(s)	327, 565, 770, 785, 1027
BssMI	GATC	1 cut(s)	781
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	4 cut(s)	327, 565, 785, 1027
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	2 cut(s)	831, 935
Bst4CI	ACNGT	2 cut(s)	589, 631
Bst6I	CTCTTC	1 cut(s)	888
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstBI	TTCGAA	1 cut(s)	886
BstDEI	CTNAG	1 cut(s)	854
BstDSI	CCRYGG	2 cut(s)	327, 770
BstEII	GGTNACC	1 cut(s)	937
BstF5I	GGATG	4 cut(s)	268, 748, 780, 970
BstFNI	CGCG	1 cut(s)	606
BstKTI	GATC	1 cut(s)	784
BstMAI	GTCTC	1 cut(s)	935
BstMBI	GATC	1 cut(s)	781
BstMWI	GCNNNNNNNGC	5 cut(s)	221, 230, 250, 914, 923
BstNI	CCWGG	2 cut(s)	831, 935
BstNSI	RCATGY	1 cut(s)	287
BstPI	GGTNACC	1 cut(s)	937
BstSCI	CCNGG	2 cut(s)	829, 933
BstSFI	CTRYAG	1 cut(s)	796
BstSLI	GKGCMC	1 cut(s)	450
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	3 cut(s)	130, 245, 344
BstV2I	GAAGAC	2 cut(s)	18, 270
BsuI	GTATCC	1 cut(s)	758
BsuRI	GGCC	2 cut(s)	555, 975
BtgI	CCRYGG	2 cut(s)	327, 770
BtsCI	GGATG	4 cut(s)	268, 748, 780, 970
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	3 cut(s)	140, 528, 575
BveI	ACCTGC	3 cut(s)	52, 917, 988
CciI	TCATGA	1 cut(s)	705
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	4 cut(s)	186, 300, 608, 1015
CviAII	CATG	8 cut(s)	216, 245, 284, 328, 360, 533, 706, 971
CviQI	GTAC	4 cut(s)	186, 300, 608, 1015
DdeI	CTNAG	1 cut(s)	854
DpnI	GATC	1 cut(s)	783
DpnII	GATC	1 cut(s)	781
EaeI	YGGCCR	2 cut(s)	553, 973
Eam1104I	CTCTTC	1 cut(s)	888
EarI	CTCTTC	1 cut(s)	888
Eco130I	CCWWGG	4 cut(s)	327, 565, 785, 1027
Eco31I	GGTCTC	1 cut(s)	935
Eco32I	GATATC	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	578
Eco91I	GGTNACC	1 cut(s)	937
EcoO65I	GGTNACC	1 cut(s)	937
EcoRII	CCWGG	2 cut(s)	829, 933
EcoRV	GATATC	1 cut(s)	562
EcoT14I	CCWWGG	4 cut(s)	327, 565, 785, 1027
ErhI	CCWWGG	4 cut(s)	327, 565, 785, 1027
FaeI	CATG	8 cut(s)	219, 248, 287, 331, 363, 536, 709, 974
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FatI	CATG	8 cut(s)	215, 244, 283, 327, 359, 532, 705, 970
Fnu4HI	GCNGC	3 cut(s)	119, 234, 333
FokI	GGATG	4 cut(s)	275, 755, 787, 977
Fsp4HI	GCNGC	3 cut(s)	119, 234, 333
FspBI	CTAG	2 cut(s)	311, 479
GluI	GCNGC	3 cut(s)	119, 234, 333
HaeIII	GGCC	2 cut(s)	555, 975
HgaI	GACGC	1 cut(s)	125
Hin1II	CATG	8 cut(s)	219, 248, 287, 331, 363, 536, 709, 974
HincII	GTYRAC	2 cut(s)	148, 870
HindII	GTYRAC	2 cut(s)	148, 870
HinfI	GANTC	4 cut(s)	275, 409, 526, 880
HphI	GGTGA	6 cut(s)	83, 305, 577, 737, 827, 931
Hpy166II	GTNNAC	3 cut(s)	140, 148, 870
Hpy188I	TCNGA	2 cut(s)	271, 597
Hpy188III	TCNNGA	3 cut(s)	31, 406, 706
Hpy8I	GTNNAC	3 cut(s)	140, 148, 870
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	6 cut(s)	253, 284, 403, 460, 502, 1028
HpyCH4III	ACNGT	2 cut(s)	589, 631
HpyCH4V	TGCA	8 cut(s)	118, 155, 215, 224, 429, 498, 575, 926
HpyF10VI	GCNNNNNNNGC	5 cut(s)	221, 230, 250, 914, 923
HpyF3I	CTNAG	1 cut(s)	854
Hsp92II	CATG	8 cut(s)	219, 248, 287, 331, 363, 536, 709, 974
KpnI	GGTACC	2 cut(s)	189, 1018
Kzo9I	GATC	1 cut(s)	781
LmnI	GCTCC	2 cut(s)	458, 493
Lsp1109I	GCAGC	3 cut(s)	130, 245, 344
LweI	GCATC	2 cut(s)	253, 810
MaeI	CTAG	2 cut(s)	311, 479
MaeIII	GTNAC	2 cut(s)	893, 937
MalI	GATC	1 cut(s)	783
MboI	GATC	1 cut(s)	781
MboII	GAAGA	6 cut(s)	23, 270, 584, 626, 655, 875
MhlI	GDGCHC	1 cut(s)	450
MlsI	TGGCCA	2 cut(s)	555, 975
MluCI	AATT	3 cut(s)	66, 100, 336
MluNI	TGGCCA	2 cut(s)	555, 975
MlyI	GAGTC	2 cut(s)	284, 874
MmeI	TCCRAC	1 cut(s)	604
MnlI	CCTC	4 cut(s)	318, 436, 733, 1035
Mox20I	TGGCCA	2 cut(s)	555, 975
MscI	TGGCCA	2 cut(s)	555, 975
MseI	TTAA	2 cut(s)	92, 1023
MslI	CAYNNNNRTG	2 cut(s)	710, 944
Msp20I	TGGCCA	2 cut(s)	555, 975
MspR9I	CCNGG	2 cut(s)	831, 935
MvaI	CCWGG	2 cut(s)	831, 935
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	5 cut(s)	221, 230, 250, 914, 923
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	1 cut(s)	781
NlaIII	CATG	8 cut(s)	219, 248, 287, 331, 363, 536, 709, 974
NlaIV	GGNNCC	3 cut(s)	187, 447, 1016
NmuCI	GTSAC	1 cut(s)	937
NspI	RCATGY	1 cut(s)	287
NspV	TTCGAA	1 cut(s)	886
OliI	CACNNNNGTG	1 cut(s)	944
PagI	TCATGA	1 cut(s)	705
PciI	ACATGT	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	409, 526
PkrI	GCNGC	3 cut(s)	120, 235, 334
PleI	GAGTC	2 cut(s)	283, 874
PpsI	GAGTC	2 cut(s)	283, 874
PscI	ACATGT	1 cut(s)	283
Psp6I	CCWGG	2 cut(s)	829, 933
PspEI	GGTNACC	1 cut(s)	937
PspGI	CCWGG	2 cut(s)	829, 933
PspN4I	GGNNCC	3 cut(s)	187, 447, 1016
RsaI	GTAC	4 cut(s)	187, 301, 609, 1016
RsaNI	GTAC	4 cut(s)	186, 300, 608, 1015
RseI	CAYNNNNRTG	2 cut(s)	710, 944
SaqAI	TTAA	2 cut(s)	92, 1023
SatI	GCNGC	3 cut(s)	119, 234, 333
Sau3AI	GATC	1 cut(s)	781
SchI	GAGTC	2 cut(s)	284, 874
ScrFI	CCNGG	2 cut(s)	831, 935
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	2 cut(s)	253, 810
SfcI	CTRYAG	1 cut(s)	796
SfuI	TTCGAA	1 cut(s)	886
SmiMI	CAYNNNNRTG	2 cut(s)	710, 944
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	3 cut(s)	66, 100, 336
SspMI	CTAG	2 cut(s)	311, 479
StyD4I	CCNGG	2 cut(s)	829, 933
StyI	CCWWGG	4 cut(s)	327, 565, 785, 1027
TaaI	ACNGT	2 cut(s)	589, 631
TaqI	TCGA	3 cut(s)	30, 405, 886
TasI	AATT	3 cut(s)	66, 100, 336
TfiI	GAWTC	2 cut(s)	409, 526
Tru1I	TTAA	2 cut(s)	92, 1023
Tru9I	TTAA	2 cut(s)	92, 1023
TscAI	CASTG	3 cut(s)	147, 528, 582
TseFI	GTSAC	1 cut(s)	937
TseI	GCWGC	3 cut(s)	118, 233, 332
Tsp45I	GTSAC	1 cut(s)	937
TspDTI	ATGAA	3 cut(s)	348, 391, 456
TspGWI	ACGGA	1 cut(s)	787
TspRI	CASTG	3 cut(s)	147, 528, 582
XceI	RCATGY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XspI	CTAG	2 cut(s)	311, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.