Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002300

Physical Location & Seq

Genomic Coordinates Forward (+)

48282223 .. 48286461

Gene Structure 4239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG260900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGTTTGTGAAGACGACGAGCCTGATGTCGAGATAGGCATACCTGCTGTTATGCTTCCCAACAAAATTGGTGAAATCTTGGAAAATGGATTAACGAACAATTCCATAGTTTCTGTGCAGCTATACTCTCCATTGCGTCCACCGGTTGACATTGCAGAAGTATTTTTATGGCTTATGGCTGTTGGTACCATCTTATTTGCTTCTTATTGGTCTGCATGGACTGCAAGAGAAGCAGCTATTGAGCATGACAAGCTATTGAAGGTTACTTCTGACGAGTCTTCACATGTGGAAGGTGAAAGTGCCAGTCCTCTAGTGGAGATTAGCACCATGGCAGCAATTCTCTTTGTTGTGATTGCTTCATGCTTCTTGGTTATGTTTTACAAACTTATGTCCTTCTGGTTCATCGAGATTCTGGTGGTTTTGTTTTGCATTGGTGGGATAGAGGTTGGAACAGTTCTTCTCGGTTGTGCCTTTTTTTATGACATCTTCTGGGTATTTGTTTCTAAATGGTGGTTCCATGAGAGTGTCATGATAGTGGTGGCTCGTGGTGATAAAAGTGGAGAGGATGGTATCCCAATGCTACTAAAAATCCCACGGATGTTTGATCCTTGGGGTGGCTACAGCATCATCGGGTTTGGTGATATTATCTTACCTGGATTGGTTGTAGCCTTTTCACTAAGGTATGATTGGTTGACAAATAAGACTCTTCGAACGGGTTACTTTGTGTGGGCAATGACAGCTTATGGTGCAGGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

252

Amino Acids

28.11

Weight (kDa)

4.48

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_A22B	PF04258	104 - 148	2.2e-06	Signal peptide peptidase
Peptidase_A22B	PF04258	147 - 251	1.9e-43	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01650 AT1G01650 AT1G01650 AT1G01650
fragaria_vesca	FvH4_7g14350 FvH4_7g14350 FvH4_7g14350 FvH4_7g14350 FvH4_7g14350
malus_domestica	MD01G1061500.v1.1 MD07G1136600.v1.1
prunus_persica	Prupe.2G171000_v2.0.a1 Prupe.2G171000_v2.0.a1
pyrus_communis	pycom01g09170 pycom07g13430
rosa_chinensis	RchiOBHm_Chr1g0355371
rosa_laevigata	RLG00000028134 RLG00000028139 RLG00000028145 RLG00000028149
rosa_multiflora	Rmu_sc0004484.1_g000010 Rmu_sc0021229.1_g000001
rosa_roxburghii	Rroxscaffold_4G00300080 Rroxscaffold_4G00300120 Rroxscaffold_4G00300280 Rroxscaffold_4G00300370 Rroxscaffold_4G00300460
rosa_rugosa	Rorug01G0246900
rosa_samantha	Rh1AG259400 Rh1AG259500 Rh1AG259800 Rh1AG260300 Rh1AG260900 Rh1BG229000 Rh1BG229200 Rh1CG243400 Rh1CG243500 Rh1DG256900
rosa_wichuraiana	Rw1G020180 Rw1G022870 Rw1G022900 Rw1G022920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	52, 740
Acc65I	GGTACC	1 cut(s)	185
AccB1I	GGYRCC	1 cut(s)	185
AclWI	GGATC	1 cut(s)	599
AfaI	GTAC	2 cut(s)	187, 754
AfiI	CCNNNNNNNGG	1 cut(s)	614
AflIII	ACRYGT	1 cut(s)	283
AgeI	ACCGGT	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	652
AluBI	AGCT	4 cut(s)	121, 236, 253, 740
AluI	AGCT	4 cut(s)	121, 236, 253, 740
AlwI	GGATC	1 cut(s)	599
ApeKI	GCWGC	3 cut(s)	118, 233, 332
AsiGI	ACCGGT	1 cut(s)	142
Asp718I	GGTACC	1 cut(s)	185
AsuHPI	GGTGA	4 cut(s)	83, 305, 560, 650
AsuII	TTCGAA	1 cut(s)	709
BanI	GGYRCC	1 cut(s)	185
BauI	CACGAG	1 cut(s)	543
BbsI	GAAGAC	2 cut(s)	18, 270
BbvI	GCAGC	3 cut(s)	130, 245, 344
BccI	CCATC	2 cut(s)	197, 560
BciT130I	CCWGG	1 cut(s)	654
BciVI	GTATCC	1 cut(s)	581
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	619
BfuAI	ACCTGC	2 cut(s)	52, 740
BfuI	GTATCC	1 cut(s)	581
BisI	GCNGC	3 cut(s)	119, 234, 333
BlsI	GCNGC	3 cut(s)	120, 235, 334
Bme1390I	CCNGG	1 cut(s)	654
BmiI	GGNNCC	2 cut(s)	187, 515
BmrFI	CCNGG	1 cut(s)	654
BmsI	GCATC	1 cut(s)	633
BpiI	GAAGAC	2 cut(s)	18, 270
Bpu14I	TTCGAA	1 cut(s)	709
BsaJI	CCNNGG	3 cut(s)	327, 593, 608
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	1 cut(s)	614
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	303
Bse3DI	GCAATG	3 cut(s)	131, 150, 738
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	3 cut(s)	327, 593, 608
BseGI	GGATG	2 cut(s)	571, 603
BseLI	CCNNNNNNNGG	1 cut(s)	614
BseMI	GCAATG	3 cut(s)	131, 150, 738
BseNI	ACTGG	1 cut(s)	303
BseXI	GCAGC	3 cut(s)	130, 245, 344
BsgI	GTGCAG	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	185
BshTI	ACCGGT	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	614
Bsp119I	TTCGAA	1 cut(s)	709
Bsp143I	GATC	1 cut(s)	604
Bsp19I	CCATGG	1 cut(s)	327
BspHI	TCATGA	1 cut(s)	528
BspLI	GGNNCC	2 cut(s)	187, 515
BspMI	ACCTGC	2 cut(s)	52, 740
BspPI	GGATC	1 cut(s)	599
BspT104I	TTCGAA	1 cut(s)	709
BspT107I	GGYRCC	1 cut(s)	185
BsrDI	GCAATG	3 cut(s)	131, 150, 738
BsrFI	RCCGGY	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	303
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	3 cut(s)	327, 593, 608
BssMI	GATC	1 cut(s)	604
BssSI	CACGAG	1 cut(s)	543
BssT1I	CCWWGG	2 cut(s)	327, 608
Bst2BI	CACGAG	1 cut(s)	543
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	1 cut(s)	454
Bst6I	CTCTTC	1 cut(s)	711
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstBI	TTCGAA	1 cut(s)	709
BstDEI	CTNAG	1 cut(s)	677
BstDSI	CCRYGG	2 cut(s)	327, 593
BstF5I	GGATG	2 cut(s)	571, 603
BstKTI	GATC	1 cut(s)	607
BstMBI	GATC	1 cut(s)	604
BstMWI	GCNNNNNNNGC	5 cut(s)	221, 230, 250, 737, 746
BstNI	CCWGG	1 cut(s)	654
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	652
BstSFI	CTRYAG	1 cut(s)	619
BstV1I	GCAGC	3 cut(s)	130, 245, 344
BstV2I	GAAGAC	2 cut(s)	18, 270
BsuI	GTATCC	1 cut(s)	581
BtgI	CCRYGG	2 cut(s)	327, 593
BtsCI	GGATG	2 cut(s)	571, 603
BveI	ACCTGC	2 cut(s)	52, 740
CciI	TCATGA	1 cut(s)	528
Cfr10I	RCCGGY	1 cut(s)	142
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	186, 753
CspAI	ACCGGT	1 cut(s)	142
CviAII	CATG	7 cut(s)	216, 245, 284, 328, 360, 518, 529
CviQI	GTAC	2 cut(s)	186, 753
DdeI	CTNAG	1 cut(s)	677
DpnI	GATC	1 cut(s)	606
DpnII	GATC	1 cut(s)	604
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
Eco130I	CCWWGG	2 cut(s)	327, 608
EcoRII	CCWGG	1 cut(s)	652
EcoT14I	CCWWGG	2 cut(s)	327, 608
ErhI	CCWWGG	2 cut(s)	327, 608
FaeI	CATG	7 cut(s)	219, 248, 287, 331, 363, 521, 532
FatI	CATG	7 cut(s)	215, 244, 283, 327, 359, 517, 528
Fnu4HI	GCNGC	3 cut(s)	119, 234, 333
FokI	GGATG	2 cut(s)	578, 610
Fsp4HI	GCNGC	3 cut(s)	119, 234, 333
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	3 cut(s)	119, 234, 333
HapII	CCGG	1 cut(s)	143
HgaI	GACGC	1 cut(s)	125
Hin1II	CATG	7 cut(s)	219, 248, 287, 331, 363, 521, 532
HincII	GTYRAC	2 cut(s)	148, 693
HindII	GTYRAC	2 cut(s)	148, 693
HinfI	GANTC	3 cut(s)	275, 409, 703
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	4 cut(s)	83, 305, 560, 650
Hpy166II	GTNNAC	3 cut(s)	140, 148, 693
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	3 cut(s)	31, 406, 529
Hpy8I	GTNNAC	3 cut(s)	140, 148, 693
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	3 cut(s)	253, 284, 403
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4V	TGCA	6 cut(s)	118, 155, 215, 224, 429, 749
HpyF10VI	GCNNNNNNNGC	5 cut(s)	221, 230, 250, 737, 746
HpyF3I	CTNAG	1 cut(s)	677
Hsp92II	CATG	7 cut(s)	219, 248, 287, 331, 363, 521, 532
KpnI	GGTACC	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	604
Lsp1109I	GCAGC	3 cut(s)	130, 245, 344
LweI	GCATC	1 cut(s)	633
MaeI	CTAG	1 cut(s)	311
MaeIII	GTNAC	2 cut(s)	262, 716
MalI	GATC	1 cut(s)	606
MboI	GATC	1 cut(s)	604
MboII	GAAGA	5 cut(s)	23, 270, 449, 478, 698
MluCI	AATT	3 cut(s)	66, 100, 336
MlyI	GAGTC	2 cut(s)	284, 697
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	3 cut(s)	318, 436, 556
MseI	TTAA	1 cut(s)	92
MslI	CAYNNNNRTG	2 cut(s)	522, 533
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	654
MvaI	CCWGG	1 cut(s)	654
MwoI	GCNNNNNNNGC	5 cut(s)	221, 230, 250, 737, 746
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	1 cut(s)	604
NlaIII	CATG	7 cut(s)	219, 248, 287, 331, 363, 521, 532
NlaIV	GGNNCC	2 cut(s)	187, 515
NspI	RCATGY	1 cut(s)	287
NspV	TTCGAA	1 cut(s)	709
PagI	TCATGA	1 cut(s)	528
PciI	ACATGT	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	409
PinAI	ACCGGT	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	120, 235, 334
PleI	GAGTC	2 cut(s)	283, 697
PpsI	GAGTC	2 cut(s)	283, 697
PscI	ACATGT	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	2 cut(s)	187, 515
RsaI	GTAC	2 cut(s)	187, 754
RsaNI	GTAC	2 cut(s)	186, 753
RseI	CAYNNNNRTG	2 cut(s)	522, 533
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	3 cut(s)	119, 234, 333
Sau3AI	GATC	1 cut(s)	604
SchI	GAGTC	2 cut(s)	284, 697
ScrFI	CCNGG	1 cut(s)	654
SfaNI	GCATC	1 cut(s)	633
SfcI	CTRYAG	1 cut(s)	619
SfuI	TTCGAA	1 cut(s)	709
SmiMI	CAYNNNNRTG	2 cut(s)	522, 533
Sse9I	AATT	3 cut(s)	66, 100, 336
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	652
StyI	CCWWGG	2 cut(s)	327, 608
TaaI	ACNGT	1 cut(s)	454
TaqI	TCGA	3 cut(s)	30, 405, 709
TasI	AATT	3 cut(s)	66, 100, 336
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TseI	GCWGC	3 cut(s)	118, 233, 332
TspDTI	ATGAA	2 cut(s)	348, 391
TspGWI	ACGGA	1 cut(s)	610
XceI	RCATGY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.