Rroxscaffold_4G00300080

Signal peptide peptidase-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
20092690 .. 20100182
7493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00300080.1

Sequence Viewer

Length: 1437 bp
ATGGAATCTCTTCGGTCGAACCGAGAGTGGGATGCGCAGACGATTGAAGAGATTCTCAGTTTGAGCTCGGCTGGAGATATAGTTGTTCATCATGATAATATTGCTCCCAAGAGGCCTGGTTGTGAAAACGACTTCGTTCTGGTAAAGGTTCCGACTTGGATCAATGGTGTAGAAGCCGACGAGTATGTTGGTGTCGGGGCTCGATTTGGACCTACCCTGGAATCAAAGGAGAAGCATGCCAATAATACTAGAGTGGTTCTGGCAGACCCCCTGATTGTTGTACCAAACCCAAGAATAAGTTTTACCACCAAGGCAAATATGGCTGAATCTGCTAATGCTTCAGCCATCCTCATCATAAATAACCGTCCAGAACTTTTCAAGATGGTTTGTGAAGACGACGAGCCTGATGTCGAGATAGGCATCCCTGCTGTTATGCTTCCCAATAAAATTGGTGAAATCTTGGAAAATGGATTAACGAACAATTCCATAGTTTCTGTGCAGCTATACTCTCCATTGCGTCCACTGGTTGACATTGCAGAAGTATTTTTATGGCTTATGGCTGTTGGTACCATCTTATTTGCTTCTTATTGGTCTGCATGGACTGCAAGAGAAGCAGCTATTGAGCATGAAAAGCTATTGAAGGATGCTTCTGACGAGTCTTCACATGTGGAAGGTGAAGGTGCCAGTCCTCTAGTGGAGATTAGCACCATGGCAGCAATTCTCTTTGTTGTGATTGCTTCATGCTTCTTGGTTATGTTTTACAAACTTATGTCCTTCTGGTTCATCGAGATTCTGGTGGTTTTGTTTTGCATTGGGGGGATAGAGGGCCTACAGACTTGCTTGGTGGCCTTGCTATCATGGGGAGGATTTGATGGACGGTTTAAACGTGCTGGAGAATCATATGTTAAGGTGCCCTTCTTTGGAGCTGTTTCATATTTGACACTAGCTGTCGCTCCCTTCTGCATAGCATTTGCTGTTGTTTGGGCAGTGTATCGCCGTGTGTCATTTGCTTGGATTGGGCAAGATATCCTTGGTATTGCACTGATAATCACTGTTCTTCAGATTGTTTGCGTACCGAATCTCAAGGTGGCTCGTGGTGATAAAAGTGGAGAGGATGGTATCCCAATGCTACTTAAAATCCCACGGATGTTTGATCCTTGGGGTGGCTACAGCATCATCGGGTTTGGTGATATTATCTTACCTGGATTGGTTGTAGCCTTTTCACTAAGGTATGATTGGTTGACAAATAAGACTCTTCGAACGGGTTACTTTGTGTGGGCAATGACAGCTTATGGTGCAGGTCTCCTGGTCACCTATGTGGCTTTGAACTTGATGGATGGACATGGCCAACCTGCTTTGTTATACATAGTTCCATTCACACTCGTGTTGACTATGTTTGAAGTCCGCATCATCAGAGTTCATGTTTTGAAAGAGTGA

Protein Analysis

478

Amino Acids

52.74

Weight (kDa)

5.08

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_A22B PF04258 231 - 363 9.7e-28 Signal peptide peptidase
Peptidase_A22B PF04258 362 - 465 7.3e-41 Signal peptide peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 36
Acc36I ACCTGC 2 cut(s) 1289, 1360
Acc65I GGTACC 1 cut(s) 566
AccB1I GGYRCC 3 cut(s) 566, 680, 910
AciI CCGC 1 cut(s) 1405
AclWI GGATC 2 cut(s) 167, 1148
AcoI YGGCCR 1 cut(s) 1345
AcuI CTGAAG 2 cut(s) 324, 1043
AfaI GTAC 3 cut(s) 282, 568, 1074
AfiI CCNNNNNNNGG 3 cut(s) 28, 920, 1163
AflIII ACRYGT 1 cut(s) 664
AgsI TTSAA 6 cut(s) 47, 379, 640, 1327, 1400, 1429
AjnI CCWGG 4 cut(s) 115, 216, 1201, 1305
AleI CACNNNNGTG 2 cut(s) 1316, 1382
AluBI AGCT 7 cut(s) 66, 502, 617, 634, 926, 947, 1289
AluI AGCT 7 cut(s) 66, 502, 617, 634, 926, 947, 1289
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 1307
AlwI GGATC 2 cut(s) 167, 1148
AoxI GGCC 4 cut(s) 113, 826, 846, 1345
ApeKI GCWGC 3 cut(s) 499, 614, 713
Asp700I GAANNNNTTC 2 cut(s) 9, 51
Asp718I GGTACC 1 cut(s) 566
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 209, 826
AsuHPI GGTGA 5 cut(s) 464, 686, 1109, 1199, 1303
AsuII TTCGAA 1 cut(s) 1258
AvaII GGWCC 1 cut(s) 209
BaeGI GKGCMC 1 cut(s) 915
BalI TGGCCA 1 cut(s) 1347
BanI GGYRCC 3 cut(s) 566, 680, 910
BanII GRGCYC 2 cut(s) 68, 202
BauI CACGAG 2 cut(s) 1092, 1382
BbsI GAAGAC 2 cut(s) 399, 651
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 3 cut(s) 511, 626, 725
BccI CCATC 7 cut(s) 353, 376, 578, 866, 1109, 1327, 1331
BceAI ACGGC 1 cut(s) 981
BciT130I CCWGG 4 cut(s) 117, 218, 1203, 1307
BciVI GTATCC 1 cut(s) 1130
BcoDI GTCTC 1 cut(s) 1307
BfaI CTAG 3 cut(s) 249, 692, 944
BfmI CTRYAG 2 cut(s) 830, 1168
BfuAI ACCTGC 2 cut(s) 1289, 1360
BfuI GTATCC 1 cut(s) 1130
BisI GCNGC 3 cut(s) 500, 615, 714
BlsI GCNGC 3 cut(s) 501, 616, 715
Bme1390I CCNGG 4 cut(s) 117, 218, 1203, 1307
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 2 cut(s) 209, 826
BmiI GGNNCC 4 cut(s) 150, 568, 682, 912
BmrFI CCNGG 4 cut(s) 117, 218, 1203, 1307
BmsI GCATC 5 cut(s) 22, 429, 634, 1182, 1416
BpiI GAAGAC 2 cut(s) 399, 651
BpmI CTGGAG 2 cut(s) 93, 912
Bpu14I TTCGAA 1 cut(s) 1258
BpuEI CTTGAG 1 cut(s) 1067
BsaBI GATNNNNATC 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 1307
BsaJI CCNNGG 6 cut(s) 216, 309, 708, 1030, 1142, 1157
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 920, 1163
Bse1I ACTGG 2 cut(s) 528, 684
Bse3DI GCAATG 3 cut(s) 512, 531, 1287
Bse8I GATNNNNATC 1 cut(s) 419
BseBI CCWGG 4 cut(s) 117, 218, 1203, 1307
BseDI CCNNGG 6 cut(s) 216, 309, 708, 1030, 1142, 1157
BseGI GGATG 7 cut(s) 37, 345, 420, 649, 1120, 1152, 1342
BseJI GATNNNNATC 1 cut(s) 419
BseLI CCNNNNNNNGG 3 cut(s) 28, 920, 1163
BseMI GCAATG 3 cut(s) 512, 531, 1287
BseMII CTCAG 1 cut(s) 70
BseNI ACTGG 2 cut(s) 528, 684
BseSI GKGCMC 1 cut(s) 915
BseXI GCAGC 3 cut(s) 511, 626, 725
BsgI GTGCAG 2 cut(s) 518, 1317
Bsh1285I CGRYCG 1 cut(s) 17
BshFI GGCC 4 cut(s) 115, 828, 848, 1347
BshNI GGYRCC 3 cut(s) 566, 680, 910
BsiEI CGRYCG 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 68
BslI CCNNNNNNNGG 3 cut(s) 28, 920, 1163
BsmAI GTCTC 1 cut(s) 1307
BsnI GGCC 4 cut(s) 115, 828, 848, 1347
Bso31I GGTCTC 1 cut(s) 1307
Bsp119I TTCGAA 1 cut(s) 1258
Bsp1286I GDGCHC 3 cut(s) 68, 202, 915
Bsp143I GATC 2 cut(s) 159, 1153
Bsp19I CCATGG 1 cut(s) 708
BspACI CCGC 1 cut(s) 1405
BspANI GGCC 4 cut(s) 115, 828, 848, 1347
BspCNI CTCAG 1 cut(s) 69
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 4 cut(s) 150, 568, 682, 912
BspMI ACCTGC 2 cut(s) 1289, 1360
BspPI GGATC 2 cut(s) 167, 1148
BspT104I TTCGAA 1 cut(s) 1258
BspT107I GGYRCC 3 cut(s) 566, 680, 910
BspTNI GGTCTC 1 cut(s) 1307
BsrDI GCAATG 3 cut(s) 512, 531, 1287
BsrI ACTGG 2 cut(s) 528, 684
BssECI CCNNGG 6 cut(s) 216, 309, 708, 1030, 1142, 1157
BssMI GATC 2 cut(s) 159, 1153
BssSI CACGAG 2 cut(s) 1092, 1382
BssT1I CCWWGG 4 cut(s) 309, 708, 1030, 1157
Bst2BI CACGAG 2 cut(s) 1092, 1382
Bst2UI CCWGG 4 cut(s) 117, 218, 1203, 1307
Bst4CI ACNGT 3 cut(s) 365, 879, 1054
Bst6I CTCTTC 3 cut(s) 15, 42, 1260
BstAPI GCANNNNNTGC 1 cut(s) 602
BstBI TTCGAA 1 cut(s) 1258
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 2 cut(s) 56, 1226
BstDSI CCRYGG 2 cut(s) 708, 1142
BstEII GGTNACC 1 cut(s) 1309
BstF5I GGATG 7 cut(s) 37, 345, 420, 649, 1120, 1152, 1342
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 2 cut(s) 162, 1156
BstMAI GTCTC 1 cut(s) 1307
BstMBI GATC 2 cut(s) 159, 1153
BstMCI CGRYCG 1 cut(s) 17
BstMWI GCNNNNNNNGC 7 cut(s) 320, 329, 602, 611, 631, 1286, 1295
BstNI CCWGG 4 cut(s) 117, 218, 1203, 1307
BstNSI RCATGY 2 cut(s) 239, 668
BstPI GGTNACC 1 cut(s) 1309
BstSCI CCNGG 4 cut(s) 115, 216, 1201, 1305
BstSFI CTRYAG 2 cut(s) 830, 1168
BstSLI GKGCMC 1 cut(s) 915
BstV1I GCAGC 3 cut(s) 511, 626, 725
BstV2I GAAGAC 2 cut(s) 399, 651
BsuI GTATCC 1 cut(s) 1130
BsuRI GGCC 4 cut(s) 115, 828, 848, 1347
BtgI CCRYGG 2 cut(s) 708, 1142
BtsCI GGATG 7 cut(s) 37, 345, 420, 649, 1120, 1152, 1342
BtsI GCAGTG 1 cut(s) 993
BtsIMutI CAGTG 4 cut(s) 521, 993, 1040, 1050
BveI ACCTGC 2 cut(s) 1289, 1360
Cac8I GCNNGC 1 cut(s) 237
CciI TCATGA 1 cut(s) 91
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 209, 826
CseI GACGC 1 cut(s) 506
Csp6I GTAC 3 cut(s) 281, 567, 1073
CviQI GTAC 3 cut(s) 281, 567, 1073
DdeI CTNAG 2 cut(s) 56, 1226
DpnI GATC 2 cut(s) 161, 1155
DpnII GATC 2 cut(s) 159, 1153
DraI TTTAAA 1 cut(s) 883
EaeI YGGCCR 1 cut(s) 1345
Eam1104I CTCTTC 3 cut(s) 15, 42, 1260
EarI CTCTTC 3 cut(s) 15, 42, 1260
Ecl136II GAGCTC 1 cut(s) 66
Eco130I CCWWGG 4 cut(s) 309, 708, 1030, 1157
Eco147I AGGCCT 1 cut(s) 115
Eco24I GRGCYC 2 cut(s) 68, 202
Eco31I GGTCTC 1 cut(s) 1307
Eco32I GATATC 1 cut(s) 1027
Eco47I GGWCC 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 66
Eco57I CTGAAG 2 cut(s) 324, 1043
Eco91I GGTNACC 1 cut(s) 1309
EcoICRI GAGCTC 1 cut(s) 66
EcoO109I RGGNCCY 1 cut(s) 826
EcoO65I GGTNACC 1 cut(s) 1309
EcoRII CCWGG 4 cut(s) 115, 216, 1201, 1305
EcoRV GATATC 1 cut(s) 1027
EcoT14I CCWWGG 4 cut(s) 309, 708, 1030, 1157
EcoT38I GRGCYC 2 cut(s) 68, 202
ErhI CCWWGG 4 cut(s) 309, 708, 1030, 1157
FalI AAGNNNNNCTT 4 cut(s) 899, 931, 1014, 1046
FauNDI CATATG 1 cut(s) 901
Fnu4HI GCNGC 3 cut(s) 500, 615, 714
FokI GGATG 7 cut(s) 44, 332, 407, 656, 1127, 1159, 1349
FriOI GRGCYC 2 cut(s) 68, 202
Fsp4HI GCNGC 3 cut(s) 500, 615, 714
FspBI CTAG 3 cut(s) 249, 692, 944
FspI TGCGCA 1 cut(s) 36
GlaI GCGC 1 cut(s) 36
GluI GCNGC 3 cut(s) 500, 615, 714
GsuI CTGGAG 2 cut(s) 93, 912
HaeIII GGCC 4 cut(s) 115, 828, 848, 1347
HgaI GACGC 1 cut(s) 506
HhaI GCGC 1 cut(s) 37
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 3 cut(s) 529, 1242, 1389
HindII GTYRAC 3 cut(s) 529, 1242, 1389
HinfI GANTC 9 cut(s) 5, 52, 221, 326, 656, 790, 896, 1078, 1252
HphI GGTGA 5 cut(s) 464, 686, 1109, 1199, 1303
Hpy166II GTNNAC 4 cut(s) 521, 529, 1242, 1389
Hpy188I TCNGA 4 cut(s) 153, 652, 1062, 1415
Hpy188III TCNNGA 5 cut(s) 92, 368, 379, 412, 787
Hpy8I GTNNAC 4 cut(s) 521, 529, 1242, 1389
Hpy99I CGWCG 2 cut(s) 182, 401
HpyAV CCTTC 6 cut(s) 634, 665, 671, 784, 925, 967
HpyCH4III ACNGT 3 cut(s) 365, 879, 1054
HpyCH4IV ACGT 1 cut(s) 886
HpyCH4V TGCA 8 cut(s) 499, 536, 596, 605, 810, 963, 1040, 1298
HpyF10VI GCNNNNNNNGC 7 cut(s) 320, 329, 602, 611, 631, 1286, 1295
HpyF3I CTNAG 2 cut(s) 56, 1226
HpySE526I ACGT 1 cut(s) 886
HspAI GCGC 1 cut(s) 35
KpnI GGTACC 1 cut(s) 570
Kzo9I GATC 2 cut(s) 159, 1153
LmnI GCTCC 3 cut(s) 109, 923, 958
Lsp1109I GCAGC 3 cut(s) 511, 626, 725
LweI GCATC 5 cut(s) 22, 429, 634, 1182, 1416
MaeI CTAG 3 cut(s) 249, 692, 944
MaeII ACGT 1 cut(s) 886
MaeIII GTNAC 2 cut(s) 1265, 1309
MalI GATC 2 cut(s) 161, 1155
MboI GATC 2 cut(s) 159, 1153
MboII GAAGA 5 cut(s) 59, 404, 651, 1049, 1247
MhlI GDGCHC 3 cut(s) 68, 202, 915
MlsI TGGCCA 1 cut(s) 1347
MluCI AATT 3 cut(s) 447, 481, 717
MluNI TGGCCA 1 cut(s) 1347
MlyI GAGTC 2 cut(s) 665, 1246
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 6 cut(s) 105, 359, 699, 817, 857, 1105
Mox20I TGGCCA 1 cut(s) 1347
MroXI GAANNNNTTC 2 cut(s) 9, 51
MscI TGGCCA 1 cut(s) 1347
MseI TTAA 4 cut(s) 473, 882, 906, 1134
MslI CAYNNNNRTG 2 cut(s) 1316, 1382
Msp20I TGGCCA 1 cut(s) 1347
MspR9I CCNGG 4 cut(s) 117, 218, 1203, 1307
MssI GTTTAAAC 1 cut(s) 883
MvaI CCWGG 4 cut(s) 117, 218, 1203, 1307
MwoI GCNNNNNNNGC 7 cut(s) 320, 329, 602, 611, 631, 1286, 1295
NcoI CCATGG 1 cut(s) 708
NdeI CATATG 1 cut(s) 901
NdeII GATC 2 cut(s) 159, 1153
NlaIV GGNNCC 4 cut(s) 150, 568, 682, 912
NmeAIII GCCGAG 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 1309
NsbI TGCGCA 1 cut(s) 36
NspI RCATGY 2 cut(s) 239, 668
NspV TTCGAA 1 cut(s) 1258
OliI CACNNNNGTG 2 cut(s) 1316, 1382
PaeI GCATGC 1 cut(s) 239
PagI TCATGA 1 cut(s) 91
PceI AGGCCT 1 cut(s) 115
PciI ACATGT 1 cut(s) 664
PcsI WCGNNNNNNNCGW 2 cut(s) 19, 883
PdmI GAANNNNTTC 2 cut(s) 9, 51
PfeI GAWTC 7 cut(s) 5, 52, 221, 326, 790, 896, 1078
PkrI GCNGC 3 cut(s) 501, 616, 715
PleI GAGTC 2 cut(s) 664, 1246
PmeI GTTTAAAC 1 cut(s) 883
PpsI GAGTC 2 cut(s) 664, 1246
PscI ACATGT 1 cut(s) 664
Psp124BI GAGCTC 1 cut(s) 68
Psp6I CCWGG 4 cut(s) 115, 216, 1201, 1305
PspEI GGTNACC 1 cut(s) 1309
PspGI CCWGG 4 cut(s) 115, 216, 1201, 1305
PspN4I GGNNCC 4 cut(s) 150, 568, 682, 912
PspPI GGNCC 2 cut(s) 209, 826
RsaI GTAC 3 cut(s) 282, 568, 1074
RsaNI GTAC 3 cut(s) 281, 567, 1073
RseI CAYNNNNRTG 2 cut(s) 1316, 1382
SacI GAGCTC 1 cut(s) 68
SaqAI TTAA 4 cut(s) 473, 882, 906, 1134
SatI GCNGC 3 cut(s) 500, 615, 714
Sau3AI GATC 2 cut(s) 159, 1153
Sau96I GGNCC 2 cut(s) 209, 826
SchI GAGTC 2 cut(s) 665, 1246
ScrFI CCNGG 4 cut(s) 117, 218, 1203, 1307
SduI GDGCHC 3 cut(s) 68, 202, 915
SfaNI GCATC 5 cut(s) 22, 429, 634, 1182, 1416
SfcI CTRYAG 2 cut(s) 830, 1168
SfuI TTCGAA 1 cut(s) 1258
SinI GGWCC 1 cut(s) 209
SmiMI CAYNNNNRTG 2 cut(s) 1316, 1382
SmlI CTYRAG 1 cut(s) 1082
SmoI CTYRAG 1 cut(s) 1082
SphI GCATGC 1 cut(s) 239
Sse9I AATT 3 cut(s) 447, 481, 717
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 1 cut(s) 1405
SspI AATATT 1 cut(s) 100
SspMI CTAG 3 cut(s) 249, 692, 944
SstI GAGCTC 1 cut(s) 68
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 4 cut(s) 115, 216, 1201, 1305
StyI CCWWGG 4 cut(s) 309, 708, 1030, 1157
TaaI ACNGT 3 cut(s) 365, 879, 1054
TaiI ACGT 1 cut(s) 889
TaqI TCGA 5 cut(s) 17, 202, 411, 786, 1258
TasI AATT 3 cut(s) 447, 481, 717
TfiI GAWTC 7 cut(s) 5, 52, 221, 326, 790, 896, 1078
Tru1I TTAA 4 cut(s) 473, 882, 906, 1134
Tru9I TTAA 4 cut(s) 473, 882, 906, 1134
TscAI CASTG 4 cut(s) 528, 993, 1047, 1057
TseFI GTSAC 1 cut(s) 1309
TseI GCWGC 3 cut(s) 499, 614, 713
Tsp45I GTSAC 1 cut(s) 1309
TspDTI ATGAA 6 cut(s) 77, 642, 729, 772, 921, 1409
TspGWI ACGGA 1 cut(s) 1159
TspRI CASTG 4 cut(s) 528, 993, 1047, 1057
VpaK11BI GGWCC 1 cut(s) 209
XceI RCATGY 2 cut(s) 239, 668
XcmI CCANNNNNNNNNTGG 2 cut(s) 316, 691
XmnI GAANNNNTTC 2 cut(s) 9, 51
XspI CTAG 3 cut(s) 249, 692, 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.