pycom01g09170

Signal peptide peptidase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
10157379 .. 10164249
6871 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g09170.13

Sequence Viewer

Length: 1620 bp
ATGGATTTACAGAGAGGTGTGTGGGTGGTGGTGGGAGTGCTGGTGGTTAGTCTAAGTCTCAGCTCAGCTGGGGACATTGTTCACCATGATGATATTGCTCCCAAGAGACCTGGATGCAACAACAACTTCGTTCTGGTAAAGGTCCCAACTTGGATCAATGGCATAGAAGACGCTGAGTATGTTGGTGCTGGTGCTCGATTTGGACCTACCTTGGAATCAAAGGAAAAATATGCCACCAACACTAAAGTGGTTCTTGCGGACCCCCCTGATTGTTGTACCCCACCCAAGAATAAGCTCGCAAAAGAGGTCATTTTGGTGCACCGAGGAAATTGCAGTTTCACAACCAAGGCAAATATGGCTGAAGCTGCTAACGCTTCAGCCATCCTCATTATAAACAACCGCACAGAACTTTACAAGATGGTTTGTGAAAAAGATGAACCTGATGTCAAGATAGGCATACCAGCTGTTATGCTTCCCCAAGATGTTGGTGCAATCTTCGAAACTGATTTGATGAACAACTCCACAGTTTCTGTGCAGCTGTACTCCCCATTGCGTCCACTAGTAGATATTGCAGAAGTTTTTTTGTGGCTTATGGCTGTTGGTACCATCTTATTTGCTTCTTATTGGTCTGCGTGGAGTGCAAGGGAAGCAGCTATTGAGCATGAGAAGTTGTTGAAGGATGCTTCCGATGATTCTTTACATATGGAAGTTGATCGATCCAATGCTTTAGAGGAGATTAGCACCACAGCAGCAATCCTCTTTGTTGTGATTGCTTCATGCTTCTTGATTATGTTTTACAAACTTATGTCATTCTGGTTTGTGGAGATTCTGGTGGTTTTGTTTTGCATTGGTGGGATAGAGGGCCTGCAGACTTGCTTGGTGACTTTTCTGTCATGTTTCAGTCGGTTCAAACGTGCTGGAGATTCATATGTTAGGCTGCCAATCTTTGGAGCTGTTTCCTATCTGACACTAGCTGTTGCTCCCTTCTGCATAGCATTTGCTGTTTTGTGGGCAGTGTATCGCCGCATTTCATTTGCTTGGATCGGTCAAGATATCCTTGGTATTGCACTGATAATCACAGTTCTTCAGATTGTTCGTGTACCAAATCTCAAGGTTGGAACAGTTCTTCTGTGTTGTGCATTTTTATACGACATCTTTTGGGTATTTGTTTCTAAGTGGTGGTTCCATGAGAGTGTAATGATAGTGGTGGCTCGTGGTGATAAAAGTGGAGAGGACGGTATACCAATGCTACTGAAAATCCCACGGATGTTTGATCCTTGTGGTGGCTACAGCATCATCGGATTTGGTGATATTATCTTACCAGGATTGGTTGTAGCCTTTTCACTAAGGTACGATTGGTTGGCGAATAAAAAGCTTCGAGCTGGTTACTTTGTGTGGGCAATGACCGCTTATGGTTTAGGTCTCCTTATCACATATGTGGCTTTGAACTTGATGGATGGCCATGGCCAACCCGCTTTGTTGTATATAGTTCCGTTCACACTTGGTACCTTTATAACTTTGGGACACATGAGAGGGGATCTCAAAGTGCTGTGGACAAGAGGAGAACCGGAGAGGCCATGCCCGCACGTCCATCTGCAACCGCAACCCTCCTCTCAATAA

Protein Analysis

540

Amino Acids

59.72

Weight (kDa)

6.09

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 392, 1514
AasI GACNNNNNNGTC 1 cut(s) 889
Acc65I GGTACC 2 cut(s) 602, 1505
AccB1I GGYRCC 2 cut(s) 602, 1505
AccB7I CCANNNNNTGG 1 cut(s) 947
AccI GTMKAC 1 cut(s) 1240
AciI CCGC 7 cut(s) 257, 400, 1024, 1407, 1473, 1583, 1601
AclWI GGATC 5 cut(s) 161, 711, 1049, 1268, 1545
AcoI YGGCCR 2 cut(s) 1459, 1465
AcuI CTGAAG 3 cut(s) 360, 381, 1070
AfaI GTAC 6 cut(s) 277, 542, 604, 1101, 1352, 1507
AfiI CCNNNNNNNGG 2 cut(s) 947, 1283
AgsI TTSAA 3 cut(s) 676, 910, 1447
AhlI ACTAGT 1 cut(s) 559
AjiI CACGTC 1 cut(s) 1588
AjnI CCWGG 2 cut(s) 109, 1321
AleI CACNNNNGTG 2 cut(s) 245, 1436
Alw21I GWGCWC 2 cut(s) 196, 321
Alw26I GTCTC 3 cut(s) 62, 100, 1427
Alw44I GTGCAC 1 cut(s) 317
AlwI GGATC 5 cut(s) 161, 711, 1049, 1268, 1545
AlwNI CAGNNNCTG 1 cut(s) 530
AoxI GGCC 4 cut(s) 862, 1459, 1465, 1574
ApaLI GTGCAC 1 cut(s) 317
ApeKI GCWGC 5 cut(s) 365, 535, 650, 749, 937
Asp718I GGTACC 2 cut(s) 602, 1505
AspS9I GGNCC 4 cut(s) 142, 203, 259, 862
AsuHPI GGTGA 4 cut(s) 74, 892, 1229, 1319
AsuII TTCGAA 1 cut(s) 498
AvaII GGWCC 3 cut(s) 142, 203, 259
BaeGI GKGCMC 1 cut(s) 321
BalI TGGCCA 2 cut(s) 1461, 1467
BanI GGYRCC 2 cut(s) 602, 1505
BauI CACGAG 1 cut(s) 1212
BbsI GAAGAC 1 cut(s) 174
Bbv12I GWGCWC 2 cut(s) 196, 321
BbvI GCAGC 5 cut(s) 352, 547, 662, 761, 924
BccI CCATC 6 cut(s) 389, 412, 614, 1447, 1451, 1599
BcgI CGANNNNNNTGC 2 cut(s) 312, 346
BciT130I CCWGG 2 cut(s) 111, 1323
BcoDI GTCTC 3 cut(s) 62, 100, 1427
BcuI ACTAGT 1 cut(s) 559
BfaI CTAG 2 cut(s) 560, 971
BfmI CTRYAG 2 cut(s) 866, 1288
BisI GCNGC 6 cut(s) 366, 536, 651, 750, 938, 1024
BlpI GCTNAGC 1 cut(s) 64
BlsI GCNGC 6 cut(s) 367, 537, 652, 751, 939, 1025
Bme1390I CCNGG 2 cut(s) 111, 1323
Bme18I GGWCC 3 cut(s) 142, 203, 259
BmgBI CACGTC 1 cut(s) 1588
BmgT120I GGNCC 4 cut(s) 142, 203, 259, 862
BmiI GGNNCC 5 cut(s) 144, 261, 604, 1184, 1507
BmrFI CCNGG 2 cut(s) 111, 1323
BmsI GCATC 3 cut(s) 104, 670, 1302
BpiI GAAGAC 1 cut(s) 174
BplI GAGNNNNNCTC 2 cut(s) 1524, 1556
BpmI CTGGAG 1 cut(s) 939
Bpu1102I GCTNAGC 1 cut(s) 64
Bpu14I TTCGAA 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 1094
Bsa29I ATCGAT 1 cut(s) 715
BsaI GGTCTC 2 cut(s) 100, 1427
BsaJI CCNNGG 6 cut(s) 210, 322, 345, 1057, 1262, 1462
BsaWI WCCGGW 1 cut(s) 1567
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 2 cut(s) 947, 1283
Bse3DI GCAATG 2 cut(s) 548, 1407
BseBI CCWGG 2 cut(s) 111, 1323
BseCI ATCGAT 1 cut(s) 715
BseDI CCNNGG 6 cut(s) 210, 322, 345, 1057, 1262, 1462
BseGI GGATG 5 cut(s) 119, 381, 685, 1272, 1462
BseLI CCNNNNNNNGG 2 cut(s) 947, 1283
BseMI GCAATG 2 cut(s) 548, 1407
BseMII CTCAG 3 cut(s) 73, 78, 165
BseRI GAGGAG 3 cut(s) 746, 1575, 1600
BseSI GKGCMC 1 cut(s) 321
BseXI GCAGC 5 cut(s) 352, 547, 662, 761, 924
BseYI CCCAGC 1 cut(s) 68
BsgI GTGCAG 1 cut(s) 554
BshFI GGCC 4 cut(s) 864, 1461, 1467, 1576
BshNI GGYRCC 2 cut(s) 602, 1505
BshVI ATCGAT 1 cut(s) 715
BsiHKAI GWGCWC 2 cut(s) 196, 321
BsiSI CCGG 1 cut(s) 1568
BslFI GGGAC 3 cut(s) 86, 128, 1536
BslI CCNNNNNNNGG 2 cut(s) 947, 1283
BsmAI GTCTC 3 cut(s) 62, 100, 1427
BsmFI GGGAC 3 cut(s) 86, 128, 1536
BsnI GGCC 4 cut(s) 864, 1461, 1467, 1576
Bso31I GGTCTC 2 cut(s) 100, 1427
Bsp119I TTCGAA 1 cut(s) 498
Bsp1286I GDGCHC 2 cut(s) 196, 321
Bsp143I GATC 6 cut(s) 153, 712, 716, 1041, 1273, 1537
Bsp1720I GCTNAGC 1 cut(s) 64
Bsp19I CCATGG 1 cut(s) 1462
BspACI CCGC 7 cut(s) 257, 400, 1024, 1407, 1473, 1583, 1601
BspANI GGCC 4 cut(s) 864, 1461, 1467, 1576
BspCNI CTCAG 3 cut(s) 72, 77, 166
BspDI ATCGAT 1 cut(s) 715
BspLI GGNNCC 5 cut(s) 144, 261, 604, 1184, 1507
BspMAI CTGCAG 1 cut(s) 870
BspPI GGATC 5 cut(s) 161, 711, 1049, 1268, 1545
BspT104I TTCGAA 1 cut(s) 498
BspT107I GGYRCC 2 cut(s) 602, 1505
BspTNI GGTCTC 2 cut(s) 100, 1427
BsrDI GCAATG 2 cut(s) 548, 1407
BssECI CCNNGG 6 cut(s) 210, 322, 345, 1057, 1262, 1462
BssMI GATC 6 cut(s) 153, 712, 716, 1041, 1273, 1537
BssNAI GTATAC 1 cut(s) 1241
BssSI CACGAG 1 cut(s) 1212
BssT1I CCWWGG 4 cut(s) 210, 345, 1057, 1462
Bst1107I GTATAC 1 cut(s) 1241
Bst2BI CACGAG 1 cut(s) 1212
Bst2UI CCWGG 2 cut(s) 111, 1323
Bst4CI ACNGT 4 cut(s) 526, 1081, 1123, 1238
BstBI TTCGAA 1 cut(s) 498
BstC8I GCNNGC 3 cut(s) 297, 866, 1583
BstDEI CTNAG 6 cut(s) 53, 59, 64, 174, 1173, 1346
BstDSI CCRYGG 2 cut(s) 1262, 1462
BstF5I GGATG 5 cut(s) 119, 381, 685, 1272, 1462
BstKTI GATC 6 cut(s) 156, 715, 719, 1044, 1276, 1540
BstMAI GTCTC 3 cut(s) 62, 100, 1427
BstMBI GATC 6 cut(s) 153, 712, 716, 1041, 1273, 1537
BstMWI GCNNNNNNNGC 7 cut(s) 356, 365, 371, 638, 647, 1406, 1582
BstNI CCWGG 2 cut(s) 111, 1323
BstSCI CCNGG 2 cut(s) 109, 1321
BstSFI CTRYAG 2 cut(s) 866, 1288
BstSLI GKGCMC 1 cut(s) 321
BstV1I GCAGC 5 cut(s) 352, 547, 662, 761, 924
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 1537
BstXI CCANNNNNNTGG 1 cut(s) 485
BstYI RGATCY 1 cut(s) 1537
BstZ17I GTATAC 1 cut(s) 1241
Bsu15I ATCGAT 1 cut(s) 715
BsuRI GGCC 4 cut(s) 864, 1461, 1467, 1576
BsuTUI ATCGAT 1 cut(s) 715
BtgI CCRYGG 2 cut(s) 1262, 1462
BtrI CACGTC 1 cut(s) 1588
BtsCI GGATG 5 cut(s) 119, 381, 685, 1272, 1462
BtsI GCAGTG 1 cut(s) 1020
BtsIMutI CAGTG 2 cut(s) 1020, 1067
Cac8I GCNNGC 3 cut(s) 297, 866, 1583
CaiI CAGNNNCTG 1 cut(s) 530
Cfr13I GGNCC 4 cut(s) 142, 203, 259, 862
ClaI ATCGAT 1 cut(s) 715
CseI GACGC 2 cut(s) 179, 542
Csp6I GTAC 6 cut(s) 276, 541, 603, 1100, 1351, 1506
CviAII CATG 8 cut(s) 86, 662, 777, 894, 1187, 1463, 1528, 1578
CviQI GTAC 6 cut(s) 276, 541, 603, 1100, 1351, 1506
DdeI CTNAG 6 cut(s) 53, 59, 64, 174, 1173, 1346
DpnI GATC 6 cut(s) 155, 714, 718, 1043, 1275, 1539
DpnII GATC 6 cut(s) 153, 712, 716, 1041, 1273, 1537
DrdI GACNNNNNNGTC 1 cut(s) 889
DseDI GACNNNNNNGTC 1 cut(s) 889
EaeI YGGCCR 2 cut(s) 1459, 1465
Eco130I CCWWGG 4 cut(s) 210, 345, 1057, 1462
Eco31I GGTCTC 2 cut(s) 100, 1427
Eco32I GATATC 1 cut(s) 1054
Eco47I GGWCC 3 cut(s) 142, 203, 259
Eco57I CTGAAG 3 cut(s) 360, 381, 1070
EcoO109I RGGNCCY 2 cut(s) 142, 862
EcoRII CCWGG 2 cut(s) 109, 1321
EcoRV GATATC 1 cut(s) 1054
EcoT14I CCWWGG 4 cut(s) 210, 345, 1057, 1462
ErhI CCWWGG 4 cut(s) 210, 345, 1057, 1462
FaeI CATG 8 cut(s) 89, 665, 780, 897, 1190, 1466, 1531, 1581
FalI AAGNNNNNCTT 4 cut(s) 237, 269, 1041, 1073
FaqI GGGAC 3 cut(s) 86, 128, 1536
FatI CATG 8 cut(s) 85, 661, 776, 893, 1186, 1462, 1527, 1577
FauI CCCGC 2 cut(s) 1480, 1590
FauNDI CATATG 3 cut(s) 702, 928, 1435
FblI GTMKAC 1 cut(s) 1240
Fnu4HI GCNGC 6 cut(s) 366, 536, 651, 750, 938, 1024
FokI GGATG 5 cut(s) 126, 368, 692, 1279, 1469
Fsp4HI GCNGC 6 cut(s) 366, 536, 651, 750, 938, 1024
FspBI CTAG 2 cut(s) 560, 971
GluI GCNGC 6 cut(s) 366, 536, 651, 750, 938, 1024
GsaI CCCAGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 939
HaeIII GGCC 4 cut(s) 864, 1461, 1467, 1576
HapII CCGG 1 cut(s) 1568
HgaI GACGC 2 cut(s) 179, 542
Hin1II CATG 8 cut(s) 89, 665, 780, 897, 1190, 1466, 1531, 1581
HindIII AAGCTT 1 cut(s) 1373
HinfI GANTC 4 cut(s) 215, 692, 826, 923
HpaII CCGG 1 cut(s) 1568
HphI GGTGA 4 cut(s) 74, 892, 1229, 1319
Hpy166II GTNNAC 7 cut(s) 82, 319, 557, 1100, 1241, 1497, 1554
Hpy188I TCNGA 4 cut(s) 688, 966, 1089, 1301
Hpy188III TCNNGA 3 cut(s) 448, 784, 1049
Hpy8I GTNNAC 7 cut(s) 82, 319, 557, 1100, 1241, 1497, 1554
HpyAV CCTTC 2 cut(s) 670, 994
HpyCH4III ACNGT 4 cut(s) 526, 1081, 1123, 1238
HpyCH4IV ACGT 2 cut(s) 913, 1587
HpyF10VI GCNNNNNNNGC 7 cut(s) 356, 365, 371, 638, 647, 1406, 1582
HpyF3I CTNAG 6 cut(s) 53, 59, 64, 174, 1173, 1346
HpySE526I ACGT 2 cut(s) 913, 1587
Hsp92II CATG 8 cut(s) 89, 665, 780, 897, 1190, 1466, 1531, 1581
KpnI GGTACC 2 cut(s) 606, 1509
Kzo9I GATC 6 cut(s) 153, 712, 716, 1041, 1273, 1537
LmnI GCTCC 3 cut(s) 103, 950, 985
Lsp1109I GCAGC 5 cut(s) 352, 547, 662, 761, 924
LweI GCATC 3 cut(s) 104, 670, 1302
MaeI CTAG 2 cut(s) 560, 971
MaeII ACGT 2 cut(s) 913, 1587
MaeIII GTNAC 2 cut(s) 880, 1385
MalI GATC 6 cut(s) 155, 714, 718, 1043, 1275, 1539
MboI GATC 6 cut(s) 153, 712, 716, 1041, 1273, 1537
MboII GAAGA 4 cut(s) 179, 487, 1076, 1118
MflI RGATCY 1 cut(s) 1537
MhlI GDGCHC 2 cut(s) 196, 321
MlsI TGGCCA 2 cut(s) 1461, 1467
MluCI AATT 1 cut(s) 328
MluNI TGGCCA 2 cut(s) 1461, 1467
MmeI TCCRAC 1 cut(s) 1096
Mox20I TGGCCA 2 cut(s) 1461, 1467
MscI TGGCCA 2 cut(s) 1461, 1467
MslI CAYNNNNRTG 5 cut(s) 87, 245, 314, 1191, 1436
Msp20I TGGCCA 2 cut(s) 1461, 1467
MspA1I CMGCKG 3 cut(s) 68, 464, 538
MspI CCGG 1 cut(s) 1568
MspR9I CCNGG 2 cut(s) 111, 1323
MvaI CCWGG 2 cut(s) 111, 1323
MwoI GCNNNNNNNGC 7 cut(s) 356, 365, 371, 638, 647, 1406, 1582
NcoI CCATGG 1 cut(s) 1462
NdeI CATATG 3 cut(s) 702, 928, 1435
NdeII GATC 6 cut(s) 153, 712, 716, 1041, 1273, 1537
NlaIII CATG 8 cut(s) 89, 665, 780, 897, 1190, 1466, 1531, 1581
NlaIV GGNNCC 5 cut(s) 144, 261, 604, 1184, 1507
NmuCI GTSAC 1 cut(s) 880
NspV TTCGAA 1 cut(s) 498
OliI CACNNNNGTG 2 cut(s) 245, 1436
PcsI WCGNNNNNNNCGW 1 cut(s) 910
PfeI GAWTC 4 cut(s) 215, 692, 826, 923
PflMI CCANNNNNTGG 1 cut(s) 947
PkrI GCNGC 6 cut(s) 367, 537, 652, 751, 939, 1025
PpuMI RGGWCCY 1 cut(s) 142
PsiI TTATAA 2 cut(s) 392, 1514
Psp5II RGGWCCY 1 cut(s) 142
Psp6I CCWGG 2 cut(s) 109, 1321
PspFI CCCAGC 1 cut(s) 68
PspGI CCWGG 2 cut(s) 109, 1321
PspN4I GGNNCC 5 cut(s) 144, 261, 604, 1184, 1507
PspPI GGNCC 4 cut(s) 142, 203, 259, 862
PspPPI RGGWCCY 1 cut(s) 142
PstI CTGCAG 1 cut(s) 870
PstNI CAGNNNCTG 1 cut(s) 530
PsuI RGATCY 1 cut(s) 1537
PvuII CAGCTG 3 cut(s) 68, 464, 538
RsaI GTAC 6 cut(s) 277, 542, 604, 1101, 1352, 1507
RsaNI GTAC 6 cut(s) 276, 541, 603, 1100, 1351, 1506
RseI CAYNNNNRTG 5 cut(s) 87, 245, 314, 1191, 1436
SatI GCNGC 6 cut(s) 366, 536, 651, 750, 938, 1024
Sau3AI GATC 6 cut(s) 153, 712, 716, 1041, 1273, 1537
Sau96I GGNCC 4 cut(s) 142, 203, 259, 862
ScrFI CCNGG 2 cut(s) 111, 1323
SduI GDGCHC 2 cut(s) 196, 321
SfaNI GCATC 3 cut(s) 104, 670, 1302
SfcI CTRYAG 2 cut(s) 866, 1288
SfuI TTCGAA 1 cut(s) 498
SinI GGWCC 3 cut(s) 142, 203, 259
SmiMI CAYNNNNRTG 5 cut(s) 87, 245, 314, 1191, 1436
SmlI CTYRAG 1 cut(s) 1109
SmoI CTYRAG 1 cut(s) 1109
SpeI ACTAGT 1 cut(s) 559
Sse9I AATT 1 cut(s) 328
SsiI CCGC 7 cut(s) 257, 400, 1024, 1407, 1473, 1583, 1601
SspMI CTAG 2 cut(s) 560, 971
StyD4I CCNGG 2 cut(s) 109, 1321
StyI CCWWGG 4 cut(s) 210, 345, 1057, 1462
TaaI ACNGT 4 cut(s) 526, 1081, 1123, 1238
TaiI ACGT 2 cut(s) 916, 1590
TaqI TCGA 4 cut(s) 196, 498, 715, 1378
TaqII GACCGA 1 cut(s) 1034
TasI AATT 1 cut(s) 328
TatI WGTACW 1 cut(s) 540
TauI GCSGC 1 cut(s) 1026
TfiI GAWTC 4 cut(s) 215, 692, 826, 923
TscAI CASTG 2 cut(s) 1020, 1074
TseFI GTSAC 1 cut(s) 880
TseI GCWGC 5 cut(s) 365, 535, 650, 749, 937
Tsp45I GTSAC 1 cut(s) 880
TspDTI ATGAA 5 cut(s) 450, 527, 765, 915, 1020
TspGWI ACGGA 2 cut(s) 1279, 1482
TspRI CASTG 2 cut(s) 1020, 1074
Van91I CCANNNNNTGG 1 cut(s) 947
VneI GTGCAC 1 cut(s) 317
VpaK11BI GGWCC 3 cut(s) 142, 203, 259
XcmI CCANNNNNNNNNTGG 2 cut(s) 244, 352
XmiI GTMKAC 1 cut(s) 1240
XspI CTAG 2 cut(s) 560, 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.