Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002300

Physical Location & Seq

Genomic Coordinates Forward (+)

48497550 .. 48502188

Gene Structure 4639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G022920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGTTTGTGAAGACGACGAGCCTGATGTCGAGATAGGCATACCTGCTGTTATGCTTCCCAACAAAATTGGTGAAATCTTGGAAAATGGATTAACGAACAATTCCATATGGGTTTTCTTTTGTTTGTACTATTCTCCATTGCGTCCACTGGTTGACATTGCAGAAGTATTTTTATGGCTTATGGCTGTTGGTACCATCTTATTTGCTTCTTATTGGTCTGCATGGACTGCAAGAGAAGCAGCTATTGAGCATGACAAGTTATTGAAGGATTCTTCTGACGAGTCTTCACATGTGGAAGGTGAAGGTGCCAGTCCTCTAGTGGAGATTAGCACCATGGCAGCAATTCTCTTTGTTGTGATTGCTTCATGCTTCTTGGTTATGTTTTACAAACTTATGTCCTTCTGGTTCATCGAGATTCTGGTGGTTTTGTTTTGCATTGGTGGGATAGAGGGCCTACAGACTTGCTTGGTGGCCTTGCTATCATGGTGCCCTTCTGGAGCTGTTTCATATTTGACACTAGCTGTCGCTCCCTTCTGCATAGCATTTGCTGTTGTTTGGGCAGTGTATCATCGCCGTGTGTCATTTGCTTGGATTGGCCAAGATATCCTTGGTATTGCACTGATAATCACCGTTCTTCAGATTGTTCGCGTACCGAATCTCAAGGTTGGAACAGTTCTTCTCGGTTGTGCCTTTTTTTATGACATCTTCTGGGTATTTGTTTCTAAATGGTGGTTCCATGAGAGTGTCATGATAGTGGTGGCTCGTGGTGATAAAAGTGGAGAGGATGGTATCCCAATGCTACTAAAAATCCCACGGATGTTTGATCCTTGGGGTGGCTACAGCATCATCGGGTTTGGTGATATTATCTTACCTGGATTGGTTGTAGCCTTTTCACTGAGGTATGATTGGTTGACAAATAAGACTCTTCGAACGGGTTACTTTGTGTGGGCAATGACAGCTTATGGTGCAGGTCTCCTGGTCACCTATGTGGCTTTGAACTTGATGGATGGACATGGCCAACCTGCTTTGTTATACATAGTTCCATTCACACTTGGTACCTTTTTAACCTTGGGACAGATGAGAGGTGACCTCAAAGTTCTGTGGACAAGAGGAGAACCAGAGAGGCCTTGCCCGCACGTACGACTCCAATCCTCTCACTCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

388

Amino Acids

43.29

Weight (kDa)

5.08

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_A22B	PF04258	106 - 372	8.2e-95	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01650 AT1G01650 AT1G01650 AT1G01650
fragaria_vesca	FvH4_7g14350 FvH4_7g14350 FvH4_7g14350 FvH4_7g14350 FvH4_7g14350
malus_domestica	MD01G1061500.v1.1 MD07G1136600.v1.1
prunus_persica	Prupe.2G171000_v2.0.a1 Prupe.2G171000_v2.0.a1
pyrus_communis	pycom01g09170 pycom07g13430
rosa_chinensis	RchiOBHm_Chr1g0355371
rosa_laevigata	RLG00000028134 RLG00000028139 RLG00000028145 RLG00000028149
rosa_multiflora	Rmu_sc0004484.1_g000010 Rmu_sc0021229.1_g000001
rosa_roxburghii	Rroxscaffold_4G00300080 Rroxscaffold_4G00300120 Rroxscaffold_4G00300280 Rroxscaffold_4G00300370 Rroxscaffold_4G00300460
rosa_rugosa	Rorug01G0246900
rosa_samantha	Rh1AG259400 Rh1AG259500 Rh1AG259800 Rh1AG260300 Rh1AG260900 Rh1BG229000 Rh1BG229200 Rh1CG243400 Rh1CG243500 Rh1DG256900
rosa_wichuraiana	Rw1G020180 Rw1G022870 Rw1G022900 Rw1G022920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	52, 959, 1030
Acc65I	GGTACC	2 cut(s)	191, 1055
AccB1I	GGYRCC	4 cut(s)	191, 305, 486, 1055
AccII	CGCG	1 cut(s)	648
AciI	CCGC	1 cut(s)	1133
AclWI	GGATC	1 cut(s)	818
AcoI	YGGCCR	2 cut(s)	595, 1015
AcuI	CTGAAG	1 cut(s)	620
AfaI	GTAC	5 cut(s)	128, 193, 651, 1057, 1140
AfiI	CCNNNNNNNGG	1 cut(s)	833
AflIII	ACRYGT	1 cut(s)	289
AgsI	TTSAA	2 cut(s)	265, 997
AjnI	CCWGG	2 cut(s)	871, 975
AleI	CACNNNNGTG	1 cut(s)	986
AluBI	AGCT	4 cut(s)	242, 500, 521, 959
AluI	AGCT	4 cut(s)	242, 500, 521, 959
Alw26I	GTCTC	1 cut(s)	977
AlwI	GGATC	1 cut(s)	818
AoxI	GGCC	5 cut(s)	451, 471, 595, 1015, 1124
ApeKI	GCWGC	2 cut(s)	239, 338
Asp718I	GGTACC	2 cut(s)	191, 1055
AspS9I	GGNCC	1 cut(s)	451
AsuHPI	GGTGA	7 cut(s)	83, 311, 619, 779, 869, 973, 1097
AsuII	TTCGAA	1 cut(s)	928
BaeGI	GKGCMC	1 cut(s)	491
BalI	TGGCCA	2 cut(s)	597, 1017
BanI	GGYRCC	4 cut(s)	191, 305, 486, 1055
BauI	CACGAG	1 cut(s)	762
BbsI	GAAGAC	2 cut(s)	18, 276
BbvI	GCAGC	2 cut(s)	251, 350
BccI	CCATC	4 cut(s)	203, 779, 997, 1001
BceAI	ACGGC	1 cut(s)	558
BciT130I	CCWGG	2 cut(s)	873, 977
BciVI	GTATCC	1 cut(s)	800
BcoDI	GTCTC	1 cut(s)	977
BfaI	CTAG	2 cut(s)	317, 518
BfmI	CTRYAG	2 cut(s)	455, 838
BfuAI	ACCTGC	3 cut(s)	52, 959, 1030
BfuI	GTATCC	1 cut(s)	800
BisI	GCNGC	2 cut(s)	240, 339
BlsI	GCNGC	2 cut(s)	241, 340
Bme1390I	CCNGG	2 cut(s)	873, 977
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	5 cut(s)	193, 307, 488, 734, 1057
BmrFI	CCNGG	2 cut(s)	873, 977
BmsI	GCATC	1 cut(s)	852
BpiI	GAAGAC	2 cut(s)	18, 276
BplI	GAGNNNNNCTC	2 cut(s)	1074, 1106
BpmI	CTGGAG	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	928
BpuEI	CTTGAG	1 cut(s)	644
BsaAI	YACGTR	1 cut(s)	1138
BsaI	GGTCTC	1 cut(s)	977
BsaJI	CCNNGG	5 cut(s)	333, 607, 812, 827, 1068
Bsc4I	CCNNNNNNNGG	1 cut(s)	833
Bse1I	ACTGG	2 cut(s)	153, 309
Bse3DI	GCAATG	3 cut(s)	137, 156, 957
BseBI	CCWGG	2 cut(s)	873, 977
BseDI	CCNNGG	5 cut(s)	333, 607, 812, 827, 1068
BseGI	GGATG	3 cut(s)	790, 822, 1012
BseLI	CCNNNNNNNGG	1 cut(s)	833
BseMI	GCAATG	3 cut(s)	137, 156, 957
BseMII	CTCAG	1 cut(s)	887
BseNI	ACTGG	2 cut(s)	153, 309
BseRI	GAGGAG	1 cut(s)	1125
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	2 cut(s)	251, 350
BsgI	GTGCAG	1 cut(s)	987
Bsh1236I	CGCG	1 cut(s)	648
BshFI	GGCC	5 cut(s)	453, 473, 597, 1017, 1126
BshNI	GGYRCC	4 cut(s)	191, 305, 486, 1055
BsiWI	CGTACG	1 cut(s)	1138
BslFI	GGGAC	1 cut(s)	1086
BslI	CCNNNNNNNGG	1 cut(s)	833
BsmAI	GTCTC	1 cut(s)	977
BsmFI	GGGAC	1 cut(s)	1086
BsnI	GGCC	5 cut(s)	453, 473, 597, 1017, 1126
Bso31I	GGTCTC	1 cut(s)	977
Bsp119I	TTCGAA	1 cut(s)	928
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	1 cut(s)	823
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	1 cut(s)	1133
BspANI	GGCC	5 cut(s)	453, 473, 597, 1017, 1126
BspCNI	CTCAG	1 cut(s)	888
BspFNI	CGCG	1 cut(s)	648
BspHI	TCATGA	1 cut(s)	747
BspLI	GGNNCC	5 cut(s)	193, 307, 488, 734, 1057
BspMI	ACCTGC	3 cut(s)	52, 959, 1030
BspPI	GGATC	1 cut(s)	818
BspT104I	TTCGAA	1 cut(s)	928
BspT107I	GGYRCC	4 cut(s)	191, 305, 486, 1055
BspTNI	GGTCTC	1 cut(s)	977
BsrDI	GCAATG	3 cut(s)	137, 156, 957
BsrI	ACTGG	2 cut(s)	153, 309
BssECI	CCNNGG	5 cut(s)	333, 607, 812, 827, 1068
BssMI	GATC	1 cut(s)	823
BssSI	CACGAG	1 cut(s)	762
BssT1I	CCWWGG	4 cut(s)	333, 607, 827, 1068
Bst2BI	CACGAG	1 cut(s)	762
Bst2UI	CCWGG	2 cut(s)	873, 977
Bst4CI	ACNGT	2 cut(s)	631, 673
Bst6I	CTCTTC	1 cut(s)	930
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstBAI	YACGTR	1 cut(s)	1138
BstBI	TTCGAA	1 cut(s)	928
BstC8I	GCNNGC	1 cut(s)	1133
BstDEI	CTNAG	1 cut(s)	896
BstDSI	CCRYGG	2 cut(s)	333, 812
BstEII	GGTNACC	2 cut(s)	979, 1085
BstF5I	GGATG	3 cut(s)	790, 822, 1012
BstFNI	CGCG	1 cut(s)	648
BstKTI	GATC	1 cut(s)	826
BstMAI	GTCTC	1 cut(s)	977
BstMBI	GATC	1 cut(s)	823
BstMWI	GCNNNNNNNGC	5 cut(s)	227, 236, 956, 965, 1132
BstNI	CCWGG	2 cut(s)	873, 977
BstNSI	RCATGY	1 cut(s)	293
BstPI	GGTNACC	2 cut(s)	979, 1085
BstSCI	CCNGG	2 cut(s)	871, 975
BstSFI	CTRYAG	2 cut(s)	455, 838
BstSLI	GKGCMC	1 cut(s)	491
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	2 cut(s)	251, 350
BstV2I	GAAGAC	2 cut(s)	18, 276
BsuI	GTATCC	1 cut(s)	800
BsuRI	GGCC	5 cut(s)	453, 473, 597, 1017, 1126
BtgI	CCRYGG	2 cut(s)	333, 812
BtgZI	GCGATG	1 cut(s)	554
BtsCI	GGATG	3 cut(s)	790, 822, 1012
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	4 cut(s)	146, 567, 617, 893
BveI	ACCTGC	3 cut(s)	52, 959, 1030
Cac8I	GCNNGC	1 cut(s)	1133
CciI	TCATGA	1 cut(s)	747
Cfr13I	GGNCC	1 cut(s)	451
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	5 cut(s)	127, 192, 650, 1056, 1139
CviAII	CATG	9 cut(s)	222, 251, 290, 334, 366, 483, 737, 748, 1013
CviQI	GTAC	5 cut(s)	127, 192, 650, 1056, 1139
DdeI	CTNAG	1 cut(s)	896
DpnI	GATC	1 cut(s)	825
DpnII	GATC	1 cut(s)	823
EaeI	YGGCCR	2 cut(s)	595, 1015
Eam1104I	CTCTTC	1 cut(s)	930
EarI	CTCTTC	1 cut(s)	930
Eco130I	CCWWGG	4 cut(s)	333, 607, 827, 1068
Eco147I	AGGCCT	1 cut(s)	1126
Eco31I	GGTCTC	1 cut(s)	977
Eco32I	GATATC	1 cut(s)	604
Eco57I	CTGAAG	1 cut(s)	620
Eco91I	GGTNACC	2 cut(s)	979, 1085
EcoO109I	RGGNCCY	1 cut(s)	451
EcoO65I	GGTNACC	2 cut(s)	979, 1085
EcoRII	CCWGG	2 cut(s)	871, 975
EcoRV	GATATC	1 cut(s)	604
EcoT14I	CCWWGG	4 cut(s)	333, 607, 827, 1068
ErhI	CCWWGG	4 cut(s)	333, 607, 827, 1068
FaeI	CATG	9 cut(s)	225, 254, 293, 337, 369, 486, 740, 751, 1016
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FaqI	GGGAC	1 cut(s)	1086
FatI	CATG	9 cut(s)	221, 250, 289, 333, 365, 482, 736, 747, 1012
FauI	CCCGC	1 cut(s)	1140
FauNDI	CATATG	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	240, 339
FokI	GGATG	3 cut(s)	797, 829, 1019
Fsp4HI	GCNGC	2 cut(s)	240, 339
FspBI	CTAG	2 cut(s)	317, 518
GluI	GCNGC	2 cut(s)	240, 339
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	5 cut(s)	453, 473, 597, 1017, 1126
HgaI	GACGC	1 cut(s)	131
Hin1II	CATG	9 cut(s)	225, 254, 293, 337, 369, 486, 740, 751, 1016
HincII	GTYRAC	2 cut(s)	154, 912
HindII	GTYRAC	2 cut(s)	154, 912
HinfI	GANTC	6 cut(s)	269, 281, 415, 655, 922, 1143
HphI	GGTGA	7 cut(s)	83, 311, 619, 779, 869, 973, 1097
Hpy166II	GTNNAC	4 cut(s)	146, 154, 912, 1104
Hpy188I	TCNGA	2 cut(s)	277, 639
Hpy188III	TCNNGA	4 cut(s)	31, 412, 495, 748
Hpy8I	GTNNAC	4 cut(s)	146, 154, 912, 1104
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	6 cut(s)	259, 290, 296, 409, 501, 541
HpyCH4III	ACNGT	2 cut(s)	631, 673
HpyCH4IV	ACGT	1 cut(s)	1137
HpyCH4V	TGCA	7 cut(s)	161, 221, 230, 435, 537, 617, 968
HpyF10VI	GCNNNNNNNGC	5 cut(s)	227, 236, 956, 965, 1132
HpyF3I	CTNAG	1 cut(s)	896
HpySE526I	ACGT	1 cut(s)	1137
Hsp92II	CATG	9 cut(s)	225, 254, 293, 337, 369, 486, 740, 751, 1016
KpnI	GGTACC	2 cut(s)	195, 1059
Kzo9I	GATC	1 cut(s)	823
LmnI	GCTCC	2 cut(s)	497, 532
Lsp1109I	GCAGC	2 cut(s)	251, 350
LweI	GCATC	1 cut(s)	852
MaeI	CTAG	2 cut(s)	317, 518
MaeII	ACGT	1 cut(s)	1137
MaeIII	GTNAC	3 cut(s)	935, 979, 1085
MalI	GATC	1 cut(s)	825
MboI	GATC	1 cut(s)	823
MboII	GAAGA	7 cut(s)	23, 264, 276, 626, 668, 697, 917
MhlI	GDGCHC	1 cut(s)	491
MlsI	TGGCCA	2 cut(s)	597, 1017
MluCI	AATT	3 cut(s)	66, 100, 342
MluNI	TGGCCA	2 cut(s)	597, 1017
MlyI	GAGTC	3 cut(s)	290, 916, 1137
MmeI	TCCRAC	1 cut(s)	646
MnlI	CCTC	9 cut(s)	324, 442, 775, 891, 1076, 1100, 1103, 1116, 1162
Mox20I	TGGCCA	2 cut(s)	597, 1017
MscI	TGGCCA	2 cut(s)	597, 1017
MseI	TTAA	2 cut(s)	92, 1064
MslI	CAYNNNNRTG	4 cut(s)	573, 741, 752, 986
Msp20I	TGGCCA	2 cut(s)	597, 1017
MspR9I	CCNGG	2 cut(s)	873, 977
MvaI	CCWGG	2 cut(s)	873, 977
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	5 cut(s)	227, 236, 956, 965, 1132
NcoI	CCATGG	1 cut(s)	333
NdeI	CATATG	1 cut(s)	107
NdeII	GATC	1 cut(s)	823
NlaIII	CATG	9 cut(s)	225, 254, 293, 337, 369, 486, 740, 751, 1016
NlaIV	GGNNCC	5 cut(s)	193, 307, 488, 734, 1057
NmuCI	GTSAC	2 cut(s)	979, 1085
NspI	RCATGY	1 cut(s)	293
NspV	TTCGAA	1 cut(s)	928
OliI	CACNNNNGTG	1 cut(s)	986
PagI	TCATGA	1 cut(s)	747
PceI	AGGCCT	1 cut(s)	1126
PciI	ACATGT	1 cut(s)	289
PfeI	GAWTC	3 cut(s)	269, 415, 655
Pfl23II	CGTACG	1 cut(s)	1138
PkrI	GCNGC	2 cut(s)	241, 340
PleI	GAGTC	3 cut(s)	289, 916, 1137
PpsI	GAGTC	3 cut(s)	289, 916, 1137
Ppu21I	YACGTR	1 cut(s)	1138
PscI	ACATGT	1 cut(s)	289
Psp6I	CCWGG	2 cut(s)	871, 975
PspEI	GGTNACC	2 cut(s)	979, 1085
PspGI	CCWGG	2 cut(s)	871, 975
PspLI	CGTACG	1 cut(s)	1138
PspN4I	GGNNCC	5 cut(s)	193, 307, 488, 734, 1057
PspPI	GGNCC	1 cut(s)	451
RsaI	GTAC	5 cut(s)	128, 193, 651, 1057, 1140
RsaNI	GTAC	5 cut(s)	127, 192, 650, 1056, 1139
RseI	CAYNNNNRTG	4 cut(s)	573, 741, 752, 986
SaqAI	TTAA	2 cut(s)	92, 1064
SatI	GCNGC	2 cut(s)	240, 339
Sau3AI	GATC	1 cut(s)	823
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	3 cut(s)	290, 916, 1137
ScrFI	CCNGG	2 cut(s)	873, 977
SduI	GDGCHC	1 cut(s)	491
SfaNI	GCATC	1 cut(s)	852
SfcI	CTRYAG	2 cut(s)	455, 838
SfuI	TTCGAA	1 cut(s)	928
SmiMI	CAYNNNNRTG	4 cut(s)	573, 741, 752, 986
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
Sse9I	AATT	3 cut(s)	66, 100, 342
SseBI	AGGCCT	1 cut(s)	1126
SsiI	CCGC	1 cut(s)	1133
SspMI	CTAG	2 cut(s)	317, 518
StuI	AGGCCT	1 cut(s)	1126
StyD4I	CCNGG	2 cut(s)	871, 975
StyI	CCWWGG	4 cut(s)	333, 607, 827, 1068
TaaI	ACNGT	2 cut(s)	631, 673
TaiI	ACGT	1 cut(s)	1140
TaqI	TCGA	3 cut(s)	30, 411, 928
TasI	AATT	3 cut(s)	66, 100, 342
TatI	WGTACW	1 cut(s)	126
TfiI	GAWTC	3 cut(s)	269, 415, 655
Tru1I	TTAA	2 cut(s)	92, 1064
Tru9I	TTAA	2 cut(s)	92, 1064
TscAI	CASTG	4 cut(s)	153, 567, 624, 900
TseFI	GTSAC	2 cut(s)	979, 1085
TseI	GCWGC	2 cut(s)	239, 338
Tsp45I	GTSAC	2 cut(s)	979, 1085
TspDTI	ATGAA	3 cut(s)	354, 397, 495
TspGWI	ACGGA	1 cut(s)	829
TspRI	CASTG	4 cut(s)	153, 567, 624, 900
XceI	RCATGY	1 cut(s)	293
XcmI	CCANNNNNNNNNTGG	2 cut(s)	316, 605
XspI	CTAG	2 cut(s)	317, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.