MD07G1136600.v1.1

Signal peptide peptidase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
19898741 .. 19905497
6757 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1136600.v1.1.491

Sequence Viewer

Length: 1614 bp
ATGGATTTACAGAGAGGTGTGTGGGTGGTGGTGGGAGTGCTGGTGGTTAGTCTGAGTCTGAGCTCAGCTGGTGACATTGTTCACCACGATAATATTGCTCCCAAGAGGCCTGGATGCGAGAACGACTTCGTTCTGGTAAAGGTCCCAACTTGGATCAACGGCTTAGAAGACGCTGAGTATGTTGGTGTTGGTGCTCGATTTGGACCTACCTTGGAATCAAAGGAAAAACATGCCACCAACACTAGAGTGGTTCTTGCAGACCCCCCTGATTGTTGTAGCCTACCCAAGAATAAGCTCGCTAAAGAGGTCATTTTGGTGCACCGAGGGAATTGCAGTTTCACAACCAAGGCAAATATGGCTGAAGCTGCTAATGCTTCAGCCATCCTCATTATAAACAACCGCACAGAACTTTTCAAGATGGTTTGTGAAAATGATGAACCTGATGTCGAGATAGGCATACCAGCTGTTATGCTTCCCCAAGATGTTGGTGTAATCTTCGAAACTGATTTAAAGAACAACTCCATGGTTTCTGTGCAGCTGTACTCTCCTTTGCGTCCACTGGTTGATATTGCAGAAGTTTTTTTGTGGCTTATGGCTGTTGGTACCATCTTGTTTGCTTCTTATTGGTCTGCGTGGAGTGCAAGAGAAGCAGCTATTGAGCATGAGAAGCTATTGAAGGATGCTTCCGATGATTCTTTACCTATTGAAGTTGATCGTTCCAATGCTTTAGTGGAGATTAGCACCACAGCAGCAATCCTTTTTGTTGTGATTGCTTCATGCTTCTTGATTATGTTTTACAAACTCATGTCATTCTGGTTTGTGGAGATTCTGGTGGTTTTGTTTTGCATTGGCGGGATAGAGGGCCTGCAGACTTGCTTGGTGACTTTGTTATCATGTTTCAGACGGTTTAAACGTGCTGGGGAATCATATGTTCGGCTGCCAATCTTTGGAGCTGTTTCATATCTGACACTAGCTGTTGCTCCCTTCTGCATAGCATTTGCTGTTTTGTGGGCAGTGTATCGCCGCATTTCATTTGCTTGGATCGGTCAAGATATCCTTGGTATTGCACTGATAATCACAGTTCTTCAGCTTGTTCGTATACCGAATCTCAAGGTTGGAACAGTTCTTCTGAGTTGTGCGTTTTTATACGACATCTTCTGGGTATTTGTTTCTAAATGGTGGTTCCATGAGAGCGTAATGATAGTGGTGGCTCGTGGTGATAAAAGTGGAGAGGACGGTATACCAATGCTACTGAAAATCCCACGGATGTTTGATCCCTGGGGTGGCTACAGTATCATCGGATTTGGTGATATTATCTTACCAGGATTGGTTGTAGCCTTTTCACTAAGGTATGATTGGTTAGCAAATAAGAAGCTCCGAGCTGGTTACTTTTTGTGGGCTATGACCGCTTATGGTTTAGGTCTCCTTATCACATATGTGGCTTTAAACTTGATGGACGGCCATGGCCAACCAGCTTTGTTGTATATAGTTCCGTTCACACTTGGTACCTTTTTGACTTTGGGACACATGAGAGGGGATCTCAAAGTTCTGTGGACAAGAGGAGAACCGGAGAGGCCATGCCCGCACGTCCATCTGCAACCCTCCTCTCAATAA

Protein Analysis

538

Amino Acids

59.63

Weight (kDa)

5.97

Isoelectric Point (pI)

34.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 83 - 163 2.9e-11 PA domain
Peptidase_A22B PF04258 240 - 522 6.9e-102 Signal peptide peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 392
Acc65I GGTACC 2 cut(s) 602, 1505
AccB1I GGYRCC 2 cut(s) 602, 1505
AccB7I CCANNNNNTGG 1 cut(s) 947
AccI GTMKAC 2 cut(s) 1099, 1240
AciI CCGC 5 cut(s) 400, 852, 1024, 1407, 1583
AclWI GGATC 4 cut(s) 161, 1049, 1268, 1545
AcoI YGGCCR 2 cut(s) 1459, 1465
AcuI CTGAAG 3 cut(s) 360, 381, 1070
AfaI GTAC 3 cut(s) 542, 604, 1507
AfiI CCNNNNNNNGG 2 cut(s) 947, 1283
AgsI TTSAA 3 cut(s) 415, 676, 707
AjiI CACGTC 1 cut(s) 1588
AjnI CCWGG 3 cut(s) 109, 1277, 1321
AleI CACNNNNGTG 2 cut(s) 245, 1436
Alw21I GWGCWC 3 cut(s) 65, 196, 321
Alw26I GTCTC 1 cut(s) 1427
Alw44I GTGCAC 1 cut(s) 317
AlwI GGATC 4 cut(s) 161, 1049, 1268, 1545
AoxI GGCC 5 cut(s) 107, 862, 1459, 1465, 1574
ApaLI GTGCAC 1 cut(s) 317
ApeKI GCWGC 5 cut(s) 365, 535, 650, 749, 937
Asp700I GAANNNNTTC 1 cut(s) 125
Asp718I GGTACC 2 cut(s) 602, 1505
AspS9I GGNCC 3 cut(s) 142, 203, 862
AsuHPI GGTGA 5 cut(s) 74, 83, 892, 1229, 1319
AsuII TTCGAA 1 cut(s) 498
AvaII GGWCC 2 cut(s) 142, 203
BaeGI GKGCMC 1 cut(s) 321
BalI TGGCCA 1 cut(s) 1467
BanI GGYRCC 2 cut(s) 602, 1505
BanII GRGCYC 1 cut(s) 65
BauI CACGAG 1 cut(s) 1212
BbsI GAAGAC 1 cut(s) 174
Bbv12I GWGCWC 3 cut(s) 65, 196, 321
BbvI GCAGC 5 cut(s) 352, 547, 662, 761, 924
BccI CCATC 5 cut(s) 389, 412, 614, 1447, 1599
BceAI ACGGC 2 cut(s) 175, 1474
BcgI CGANNNNNNTGC 4 cut(s) 77, 111, 312, 346
BciT130I CCWGG 3 cut(s) 111, 1279, 1323
BcoDI GTCTC 1 cut(s) 1427
BfaI CTAG 2 cut(s) 243, 971
BfmI CTRYAG 2 cut(s) 866, 1288
BisI GCNGC 6 cut(s) 366, 536, 651, 750, 938, 1024
BlpI GCTNAGC 1 cut(s) 64
BlsI GCNGC 6 cut(s) 367, 537, 652, 751, 939, 1025
Bme1390I CCNGG 3 cut(s) 111, 1279, 1323
Bme18I GGWCC 2 cut(s) 142, 203
BmgBI CACGTC 1 cut(s) 1588
BmgT120I GGNCC 3 cut(s) 142, 203, 862
BmiI GGNNCC 4 cut(s) 144, 604, 1184, 1507
BmrFI CCNGG 3 cut(s) 111, 1279, 1323
BmsI GCATC 2 cut(s) 104, 670
BpiI GAAGAC 1 cut(s) 174
BplI GAGNNNNNCTC 2 cut(s) 1524, 1556
Bpu1102I GCTNAGC 1 cut(s) 64
Bpu14I TTCGAA 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 1094
BsaI GGTCTC 1 cut(s) 1427
BsaJI CCNNGG 9 cut(s) 210, 322, 345, 522, 1057, 1262, 1277, 1278, 1462
BsaWI WCCGGW 1 cut(s) 1567
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 2 cut(s) 947, 1283
Bse1I ACTGG 1 cut(s) 564
BseBI CCWGG 3 cut(s) 111, 1279, 1323
BseDI CCNNGG 9 cut(s) 210, 322, 345, 522, 1057, 1262, 1277, 1278, 1462
BseGI GGATG 4 cut(s) 119, 381, 685, 1272
BseLI CCNNNNNNNGG 2 cut(s) 947, 1283
BseMII CTCAG 5 cut(s) 44, 50, 78, 165, 1121
BseNI ACTGG 1 cut(s) 564
BseRI GAGGAG 2 cut(s) 1575, 1594
BseSI GKGCMC 1 cut(s) 321
BseXI GCAGC 5 cut(s) 352, 547, 662, 761, 924
BseYI CCCAGC 1 cut(s) 917
BsgI GTGCAG 1 cut(s) 554
BshFI GGCC 5 cut(s) 109, 864, 1461, 1467, 1576
BshNI GGYRCC 2 cut(s) 602, 1505
BsiHKAI GWGCWC 3 cut(s) 65, 196, 321
BsiSI CCGG 1 cut(s) 1568
BslFI GGGAC 2 cut(s) 128, 1536
BslI CCNNNNNNNGG 2 cut(s) 947, 1283
BsmAI GTCTC 1 cut(s) 1427
BsmFI GGGAC 2 cut(s) 128, 1536
BsnI GGCC 5 cut(s) 109, 864, 1461, 1467, 1576
Bso31I GGTCTC 1 cut(s) 1427
Bsp119I TTCGAA 1 cut(s) 498
Bsp1286I GDGCHC 3 cut(s) 65, 196, 321
Bsp143I GATC 5 cut(s) 153, 712, 1041, 1273, 1537
Bsp1720I GCTNAGC 1 cut(s) 64
Bsp19I CCATGG 2 cut(s) 522, 1462
BspACI CCGC 5 cut(s) 400, 852, 1024, 1407, 1583
BspANI GGCC 5 cut(s) 109, 864, 1461, 1467, 1576
BspCNI CTCAG 5 cut(s) 45, 51, 77, 166, 1122
BspLI GGNNCC 4 cut(s) 144, 604, 1184, 1507
BspMAI CTGCAG 1 cut(s) 870
BspPI GGATC 4 cut(s) 161, 1049, 1268, 1545
BspT104I TTCGAA 1 cut(s) 498
BspT107I GGYRCC 2 cut(s) 602, 1505
BspTNI GGTCTC 1 cut(s) 1427
BsrI ACTGG 1 cut(s) 564
BssECI CCNNGG 9 cut(s) 210, 322, 345, 522, 1057, 1262, 1277, 1278, 1462
BssMI GATC 5 cut(s) 153, 712, 1041, 1273, 1537
BssNAI GTATAC 2 cut(s) 1100, 1241
BssSI CACGAG 1 cut(s) 1212
BssT1I CCWWGG 5 cut(s) 210, 345, 522, 1057, 1462
Bst1107I GTATAC 2 cut(s) 1100, 1241
Bst2BI CACGAG 1 cut(s) 1212
Bst2UI CCWGG 3 cut(s) 111, 1279, 1323
Bst4CI ACNGT 5 cut(s) 906, 1081, 1123, 1238, 1292
BstBI TTCGAA 1 cut(s) 498
BstC8I GCNNGC 3 cut(s) 297, 866, 1583
BstDEI CTNAG 7 cut(s) 53, 59, 64, 163, 174, 1130, 1346
BstDSI CCRYGG 3 cut(s) 522, 1262, 1462
BstF5I GGATG 4 cut(s) 119, 381, 685, 1272
BstKTI GATC 5 cut(s) 156, 715, 1044, 1276, 1540
BstMAI GTCTC 1 cut(s) 1427
BstMBI GATC 5 cut(s) 153, 712, 1041, 1273, 1537
BstMWI GCNNNNNNNGC 8 cut(s) 356, 365, 371, 638, 647, 667, 1406, 1582
BstNI CCWGG 3 cut(s) 111, 1279, 1323
BstNSI RCATGY 1 cut(s) 233
BstSCI CCNGG 3 cut(s) 109, 1277, 1321
BstSFI CTRYAG 2 cut(s) 866, 1288
BstSLI GKGCMC 1 cut(s) 321
BstV1I GCAGC 5 cut(s) 352, 547, 662, 761, 924
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 1537
BstXI CCANNNNNNTGG 1 cut(s) 485
BstYI RGATCY 1 cut(s) 1537
BstZ17I GTATAC 2 cut(s) 1100, 1241
BsuRI GGCC 5 cut(s) 109, 864, 1461, 1467, 1576
BtgI CCRYGG 3 cut(s) 522, 1262, 1462
BtrI CACGTC 1 cut(s) 1588
BtsCI GGATG 4 cut(s) 119, 381, 685, 1272
BtsI GCAGTG 1 cut(s) 1020
BtsIMutI CAGTG 3 cut(s) 557, 1020, 1067
Cac8I GCNNGC 3 cut(s) 297, 866, 1583
Cfr13I GGNCC 3 cut(s) 142, 203, 862
CseI GACGC 2 cut(s) 179, 542
Csp6I GTAC 3 cut(s) 541, 603, 1506
CviQI GTAC 3 cut(s) 541, 603, 1506
DdeI CTNAG 7 cut(s) 53, 59, 64, 163, 174, 1130, 1346
DpnI GATC 5 cut(s) 155, 714, 1043, 1275, 1539
DpnII GATC 5 cut(s) 153, 712, 1041, 1273, 1537
DraI TTTAAA 3 cut(s) 510, 910, 1446
EaeI YGGCCR 2 cut(s) 1459, 1465
Ecl136II GAGCTC 1 cut(s) 63
Eco130I CCWWGG 5 cut(s) 210, 345, 522, 1057, 1462
Eco147I AGGCCT 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 65
Eco31I GGTCTC 1 cut(s) 1427
Eco32I GATATC 1 cut(s) 1054
Eco47I GGWCC 2 cut(s) 142, 203
Eco53kI GAGCTC 1 cut(s) 63
Eco57I CTGAAG 3 cut(s) 360, 381, 1070
EcoICRI GAGCTC 1 cut(s) 63
EcoO109I RGGNCCY 2 cut(s) 142, 862
EcoRII CCWGG 3 cut(s) 109, 1277, 1321
EcoRV GATATC 1 cut(s) 1054
EcoT14I CCWWGG 5 cut(s) 210, 345, 522, 1057, 1462
EcoT38I GRGCYC 1 cut(s) 65
ErhI CCWWGG 5 cut(s) 210, 345, 522, 1057, 1462
FalI AAGNNNNNCTT 2 cut(s) 1041, 1073
FaqI GGGAC 2 cut(s) 128, 1536
FauI CCCGC 2 cut(s) 845, 1590
FauNDI CATATG 2 cut(s) 928, 1435
FblI GTMKAC 2 cut(s) 1099, 1240
Fnu4HI GCNGC 6 cut(s) 366, 536, 651, 750, 938, 1024
FokI GGATG 4 cut(s) 126, 368, 692, 1279
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 6 cut(s) 366, 536, 651, 750, 938, 1024
FspBI CTAG 2 cut(s) 243, 971
GluI GCNGC 6 cut(s) 366, 536, 651, 750, 938, 1024
GsaI CCCAGC 1 cut(s) 921
HaeIII GGCC 5 cut(s) 109, 864, 1461, 1467, 1576
HapII CCGG 1 cut(s) 1568
HgaI GACGC 2 cut(s) 179, 542
HinfI GANTC 6 cut(s) 55, 215, 692, 826, 923, 1105
HpaII CCGG 1 cut(s) 1568
HphI GGTGA 5 cut(s) 74, 83, 892, 1229, 1319
Hpy166II GTNNAC 7 cut(s) 82, 319, 557, 1100, 1241, 1497, 1554
Hpy188I TCNGA 8 cut(s) 54, 60, 688, 902, 966, 1131, 1301, 1379
Hpy188III TCNNGA 4 cut(s) 415, 448, 784, 1049
Hpy8I GTNNAC 7 cut(s) 82, 319, 557, 1100, 1241, 1497, 1554
HpyAV CCTTC 2 cut(s) 670, 994
HpyCH4III ACNGT 5 cut(s) 906, 1081, 1123, 1238, 1292
HpyCH4IV ACGT 2 cut(s) 913, 1587
HpyF10VI GCNNNNNNNGC 8 cut(s) 356, 365, 371, 638, 647, 667, 1406, 1582
HpyF3I CTNAG 7 cut(s) 53, 59, 64, 163, 174, 1130, 1346
HpySE526I ACGT 2 cut(s) 913, 1587
KpnI GGTACC 2 cut(s) 606, 1509
Kzo9I GATC 5 cut(s) 153, 712, 1041, 1273, 1537
LmnI GCTCC 4 cut(s) 103, 950, 985, 1380
Lsp1109I GCAGC 5 cut(s) 352, 547, 662, 761, 924
LweI GCATC 2 cut(s) 104, 670
MaeI CTAG 2 cut(s) 243, 971
MaeII ACGT 2 cut(s) 913, 1587
MaeIII GTNAC 3 cut(s) 71, 880, 1385
MalI GATC 5 cut(s) 155, 714, 1043, 1275, 1539
MboI GATC 5 cut(s) 153, 712, 1041, 1273, 1537
MboII GAAGA 5 cut(s) 179, 487, 1076, 1118, 1147
MflI RGATCY 1 cut(s) 1537
MhlI GDGCHC 3 cut(s) 65, 196, 321
MlsI TGGCCA 1 cut(s) 1467
MluCI AATT 1 cut(s) 328
MluNI TGGCCA 1 cut(s) 1467
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 1096
Mox20I TGGCCA 1 cut(s) 1467
MroXI GAANNNNTTC 1 cut(s) 125
MscI TGGCCA 1 cut(s) 1467
MseI TTAA 3 cut(s) 509, 909, 1445
MslI CAYNNNNRTG 3 cut(s) 245, 314, 1436
Msp20I TGGCCA 1 cut(s) 1467
MspA1I CMGCKG 3 cut(s) 68, 464, 538
MspI CCGG 1 cut(s) 1568
MspR9I CCNGG 3 cut(s) 111, 1279, 1323
MssI GTTTAAAC 1 cut(s) 910
MvaI CCWGG 3 cut(s) 111, 1279, 1323
MwoI GCNNNNNNNGC 8 cut(s) 356, 365, 371, 638, 647, 667, 1406, 1582
NcoI CCATGG 2 cut(s) 522, 1462
NdeI CATATG 2 cut(s) 928, 1435
NdeII GATC 5 cut(s) 153, 712, 1041, 1273, 1537
NlaIV GGNNCC 4 cut(s) 144, 604, 1184, 1507
NmuCI GTSAC 2 cut(s) 71, 880
NspI RCATGY 1 cut(s) 233
NspV TTCGAA 1 cut(s) 498
OliI CACNNNNGTG 2 cut(s) 245, 1436
PasI CCCWGGG 1 cut(s) 1278
PceI AGGCCT 1 cut(s) 109
PcsI WCGNNNNNNNCGW 1 cut(s) 910
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 5 cut(s) 215, 692, 826, 923, 1105
PflMI CCANNNNNTGG 1 cut(s) 947
PkrI GCNGC 6 cut(s) 367, 537, 652, 751, 939, 1025
PleI GAGTC 1 cut(s) 63
PmeI GTTTAAAC 1 cut(s) 910
PpsI GAGTC 1 cut(s) 63
PpuMI RGGWCCY 1 cut(s) 142
PsiI TTATAA 1 cut(s) 392
Psp124BI GAGCTC 1 cut(s) 65
Psp5II RGGWCCY 1 cut(s) 142
Psp6I CCWGG 3 cut(s) 109, 1277, 1321
PspFI CCCAGC 1 cut(s) 917
PspGI CCWGG 3 cut(s) 109, 1277, 1321
PspN4I GGNNCC 4 cut(s) 144, 604, 1184, 1507
PspPI GGNCC 3 cut(s) 142, 203, 862
PspPPI RGGWCCY 1 cut(s) 142
PstI CTGCAG 1 cut(s) 870
PsuI RGATCY 1 cut(s) 1537
PvuII CAGCTG 3 cut(s) 68, 464, 538
RsaI GTAC 3 cut(s) 542, 604, 1507
RsaNI GTAC 3 cut(s) 541, 603, 1506
RseI CAYNNNNRTG 3 cut(s) 245, 314, 1436
SacI GAGCTC 1 cut(s) 65
SaqAI TTAA 3 cut(s) 509, 909, 1445
SatI GCNGC 6 cut(s) 366, 536, 651, 750, 938, 1024
Sau3AI GATC 5 cut(s) 153, 712, 1041, 1273, 1537
Sau96I GGNCC 3 cut(s) 142, 203, 862
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 3 cut(s) 111, 1279, 1323
SduI GDGCHC 3 cut(s) 65, 196, 321
SfaNI GCATC 2 cut(s) 104, 670
SfcI CTRYAG 2 cut(s) 866, 1288
SfuI TTCGAA 1 cut(s) 498
SinI GGWCC 2 cut(s) 142, 203
SmiMI CAYNNNNRTG 3 cut(s) 245, 314, 1436
SmlI CTYRAG 1 cut(s) 1109
SmoI CTYRAG 1 cut(s) 1109
Sse9I AATT 1 cut(s) 328
SseBI AGGCCT 1 cut(s) 109
SsiI CCGC 5 cut(s) 400, 852, 1024, 1407, 1583
SspI AATATT 1 cut(s) 94
SspMI CTAG 2 cut(s) 243, 971
SstI GAGCTC 1 cut(s) 65
StuI AGGCCT 1 cut(s) 109
StyD4I CCNGG 3 cut(s) 109, 1277, 1321
StyI CCWWGG 5 cut(s) 210, 345, 522, 1057, 1462
TaaI ACNGT 5 cut(s) 906, 1081, 1123, 1238, 1292
TaiI ACGT 2 cut(s) 916, 1590
TaqI TCGA 3 cut(s) 196, 447, 498
TaqII GACCGA 1 cut(s) 1034
TasI AATT 1 cut(s) 328
TatI WGTACW 1 cut(s) 540
TauI GCSGC 1 cut(s) 1026
TfiI GAWTC 5 cut(s) 215, 692, 826, 923, 1105
Tru1I TTAA 3 cut(s) 509, 909, 1445
Tru9I TTAA 3 cut(s) 509, 909, 1445
TscAI CASTG 3 cut(s) 564, 1020, 1074
TseFI GTSAC 2 cut(s) 71, 880
TseI GCWGC 5 cut(s) 365, 535, 650, 749, 937
Tsp45I GTSAC 2 cut(s) 71, 880
TspDTI ATGAA 4 cut(s) 450, 765, 948, 1020
TspGWI ACGGA 2 cut(s) 1279, 1482
TspRI CASTG 3 cut(s) 564, 1020, 1074
Van91I CCANNNNNTGG 1 cut(s) 947
VneI GTGCAC 1 cut(s) 317
VpaK11BI GGWCC 2 cut(s) 142, 203
XceI RCATGY 1 cut(s) 233
XcmI CCANNNNNNNNNTGG 3 cut(s) 244, 352, 727
XmiI GTMKAC 2 cut(s) 1099, 1240
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 2 cut(s) 243, 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.