Rroxscaffold_4G00300370

Signal peptide peptidase-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
20655426 .. 20660292
4867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00300370.1

Sequence Viewer

Length: 1221 bp
ATGGCGGACCGCGACCCCTTGTCGGCTCCGGTCGGTAAAGGTCCCGACTTGGATCAACGGTGTAGAAGCCAACGAATGGTTTGTGAAGACAACGAGCCTGATGTTGAGATAGGCATACCTGCTGTTATGCTTCCCAACAAAATTGGTGAAATCTTGGAAAATGGATTAACGAACAATTCCATAGTTTCTGTGCAGCTATACTCTCCATTGCGTCCACTGGTTGACATTGCAGAAGTATTTTTATGGCTTATGGCTGTTGGTACCATCTTATTTGCTTCTTATTGGTCTGCATGGACTGCAAGAGAAGCAGCTATTGAGCATGACAAGCTATTGAAGGATGCTTCTGACGAGTCTTCACATGTGGAAGGTGAAAGTGCCAGTCCTCTAGTGGAGATTAGCACCATGGCAGCAATTCTCTTTGTTGTGATTGCTTCATGCTTCTTGGTTATGTTTTACAAACTTATGTCCTTCTGGTTCATCGAGATTCTGGTGGTTTTGTTTTGCATTGGTGGGATAGAGTCTCCTCCTTTTTATAGGGCCTACAGACTTGCTTGGTGGCCTTGCTATCATGGGGAGGATTTGATGGCAGAATTTGATAGACGGTTTAAACGTGCTGGAGAATCATATGTTAAGGTGCCCTTCTTTGGAGCTGTTTCATATTTGACACTAGCTGTCGCTCCCTTCTGCATAGCATTTGCTGTTGTTTGGGCAGTGAATCGCCGTGTGTCATTTGCTTGGATTGGCCAAGATATCCTTGGTATTGCACTTATAATCACCGTTCTTCAGATTGTTGGCGTACCGAATCTCAAGGTGGCTCGTGGTGATAAAAGTGGAGAGGATGGTATCCCAATGCTACTAAAAATCCCACGGATGTTTGATCCTTGGGGTGGCTACAGCATCATTGGGTTTGGTGATATTATCTTACCTGGATTGGTTGTAGCCTTTTCACTAAGGTATGATTGGTTGACAAATAAGACTCTTCGAACGGGTTACTTTGTGTGGGCAATGACAGCTTATGGTGCAGGAAGTCTAGTGCTCTATTCTAGTGAATATATGCAATTGGTTAGCAAGCCACCAGATATTTACATCATTGATTTCATCTTTAATAATTGCTTGGCAATTTGCACAAGCAGTCTCCTGGTCACCTATGTGGCTTTGAACTTGATGGATGGACATGGCCAACCTGCTTTGTTATACATAGTTCCATTCACACTTGGGTAA

Protein Analysis

406

Amino Acids

45.16

Weight (kDa)

4.92

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_A22B PF04258 129 - 271 6.1e-24 Signal peptide peptidase
Peptidase_A22B PF04258 269 - 375 2.4e-26 Signal peptide peptidase
Peptidase_A22B PF04258 376 - 406 1.4e-07 Signal peptide peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 770
Acc36I ACCTGC 2 cut(s) 127, 1192
Acc65I GGTACC 1 cut(s) 260
AccB1I GGYRCC 2 cut(s) 260, 634
AccB7I CCANNNNNTGG 1 cut(s) 76
AccII CGCG 1 cut(s) 12
AciI CCGC 2 cut(s) 5, 10
AclWI GGATC 2 cut(s) 60, 872
AcoI YGGCCR 2 cut(s) 742, 1177
AcsI RAATTY 1 cut(s) 590
AcuI CTGAAG 1 cut(s) 767
AfaI GTAC 2 cut(s) 262, 798
AfiI CCNNNNNNNGG 4 cut(s) 22, 76, 644, 887
AflIII ACRYGT 1 cut(s) 358
AgsI TTSAA 2 cut(s) 334, 1159
AhdI GACNNNNNGTC 1 cut(s) 19
AjnI CCWGG 2 cut(s) 925, 1137
AleI CACNNNNGTG 1 cut(s) 1148
AluBI AGCT 6 cut(s) 196, 311, 328, 650, 671, 1013
AluI AGCT 6 cut(s) 196, 311, 328, 650, 671, 1013
Alw21I GWGCWC 1 cut(s) 1038
Alw26I GTCTC 2 cut(s) 525, 1139
AlwI GGATC 2 cut(s) 60, 872
AoxI GGCC 4 cut(s) 537, 557, 742, 1177
ApeKI GCWGC 3 cut(s) 193, 308, 407
ApoI RAATTY 1 cut(s) 590
Asp718I GGTACC 1 cut(s) 260
AspS9I GGNCC 3 cut(s) 7, 41, 537
AsuHPI GGTGA 6 cut(s) 158, 380, 766, 833, 923, 1135
AsuII TTCGAA 1 cut(s) 982
AvaII GGWCC 2 cut(s) 7, 41
BaeGI GKGCMC 1 cut(s) 639
BalI TGGCCA 2 cut(s) 744, 1179
BanI GGYRCC 2 cut(s) 260, 634
BauI CACGAG 1 cut(s) 816
BbsI GAAGAC 2 cut(s) 93, 345
Bbv12I GWGCWC 1 cut(s) 1038
BbvI GCAGC 3 cut(s) 205, 320, 419
BccI CCATC 5 cut(s) 272, 577, 833, 1159, 1163
BceAI ACGGC 1 cut(s) 705
BciT130I CCWGG 2 cut(s) 927, 1139
BciVI GTATCC 1 cut(s) 854
BcoDI GTCTC 2 cut(s) 525, 1139
BfaI CTAG 4 cut(s) 386, 668, 1031, 1044
BfmI CTRYAG 2 cut(s) 541, 892
BfuAI ACCTGC 2 cut(s) 127, 1192
BfuI GTATCC 1 cut(s) 854
BisI GCNGC 3 cut(s) 194, 309, 408
BlsI GCNGC 3 cut(s) 195, 310, 409
Bme1390I CCNGG 2 cut(s) 927, 1139
Bme18I GGWCC 2 cut(s) 7, 41
BmeRI GACNNNNNGTC 1 cut(s) 19
BmgT120I GGNCC 3 cut(s) 7, 41, 537
BmiI GGNNCC 4 cut(s) 27, 43, 262, 636
BmrFI CCNGG 2 cut(s) 927, 1139
BmsI GCATC 2 cut(s) 328, 906
BpiI GAAGAC 2 cut(s) 93, 345
BpmI CTGGAG 1 cut(s) 636
Bpu14I TTCGAA 1 cut(s) 982
BpuEI CTTGAG 1 cut(s) 791
BsaJI CCNNGG 4 cut(s) 402, 754, 866, 881
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 76, 644, 887
Bse1I ACTGG 2 cut(s) 222, 378
Bse3DI GCAATG 3 cut(s) 206, 225, 1011
BseBI CCWGG 2 cut(s) 927, 1139
BseDI CCNNGG 4 cut(s) 402, 754, 866, 881
BseGI GGATG 4 cut(s) 343, 844, 876, 1174
BseLI CCNNNNNNNGG 4 cut(s) 22, 76, 644, 887
BseMI GCAATG 3 cut(s) 206, 225, 1011
BseNI ACTGG 2 cut(s) 222, 378
BseRI GAGGAG 1 cut(s) 513
BseSI GKGCMC 1 cut(s) 639
BseXI GCAGC 3 cut(s) 205, 320, 419
BsgI GTGCAG 2 cut(s) 212, 1041
Bsh1236I CGCG 1 cut(s) 12
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 4 cut(s) 539, 559, 744, 1179
BshNI GGYRCC 2 cut(s) 260, 634
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 1038
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 4 cut(s) 22, 76, 644, 887
BsmAI GTCTC 2 cut(s) 525, 1139
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 4 cut(s) 539, 559, 744, 1179
Bsp119I TTCGAA 1 cut(s) 982
Bsp1286I GDGCHC 2 cut(s) 639, 1038
Bsp143I GATC 2 cut(s) 52, 877
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 2 cut(s) 5, 10
BspANI GGCC 4 cut(s) 539, 559, 744, 1179
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 4 cut(s) 27, 43, 262, 636
BspMI ACCTGC 2 cut(s) 127, 1192
BspPI GGATC 2 cut(s) 60, 872
BspT104I TTCGAA 1 cut(s) 982
BspT107I GGYRCC 2 cut(s) 260, 634
BsrDI GCAATG 3 cut(s) 206, 225, 1011
BsrI ACTGG 2 cut(s) 222, 378
BssECI CCNNGG 4 cut(s) 402, 754, 866, 881
BssMI GATC 2 cut(s) 52, 877
BssSI CACGAG 1 cut(s) 816
BssT1I CCWWGG 3 cut(s) 402, 754, 881
Bst2BI CACGAG 1 cut(s) 816
Bst2UI CCWGG 2 cut(s) 927, 1139
Bst4CI ACNGT 3 cut(s) 60, 603, 778
Bst6I CTCTTC 1 cut(s) 984
BstAPI GCANNNNNTGC 1 cut(s) 296
BstBI TTCGAA 1 cut(s) 982
BstC8I GCNNGC 1 cut(s) 1070
BstDEI CTNAG 1 cut(s) 950
BstDSI CCRYGG 2 cut(s) 402, 866
BstEII GGTNACC 1 cut(s) 1141
BstF5I GGATG 4 cut(s) 343, 844, 876, 1174
BstFNI CGCG 1 cut(s) 12
BstKTI GATC 2 cut(s) 55, 880
BstMAI GTCTC 2 cut(s) 525, 1139
BstMBI GATC 2 cut(s) 52, 877
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 5 cut(s) 296, 305, 325, 1010, 1019
BstNI CCWGG 2 cut(s) 927, 1139
BstNSI RCATGY 1 cut(s) 362
BstPI GGTNACC 1 cut(s) 1141
BstSCI CCNGG 2 cut(s) 925, 1137
BstSFI CTRYAG 2 cut(s) 541, 892
BstSLI GKGCMC 1 cut(s) 639
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 3 cut(s) 205, 320, 419
BstV2I GAAGAC 2 cut(s) 93, 345
BsuI GTATCC 1 cut(s) 854
BsuRI GGCC 4 cut(s) 539, 559, 744, 1179
BtgI CCRYGG 2 cut(s) 402, 866
BtsCI GGATG 4 cut(s) 343, 844, 876, 1174
BtsI GCAGTG 1 cut(s) 717
BtsIMutI CAGTG 2 cut(s) 215, 717
BveI ACCTGC 2 cut(s) 127, 1192
Cac8I GCNNGC 1 cut(s) 1070
Cfr13I GGNCC 3 cut(s) 7, 41, 537
CpoI CGGWCCG 1 cut(s) 7
CseI GACGC 1 cut(s) 200
Csp6I GTAC 2 cut(s) 261, 797
CspI CGGWCCG 1 cut(s) 7
CviAII CATG 7 cut(s) 291, 320, 359, 403, 435, 569, 1175
CviQI GTAC 2 cut(s) 261, 797
DdeI CTNAG 1 cut(s) 950
DpnI GATC 2 cut(s) 54, 879
DpnII GATC 2 cut(s) 52, 877
DraI TTTAAA 1 cut(s) 607
DriI GACNNNNNGTC 1 cut(s) 19
EaeI YGGCCR 2 cut(s) 742, 1177
Eam1104I CTCTTC 1 cut(s) 984
Eam1105I GACNNNNNGTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 984
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 3 cut(s) 402, 754, 881
Eco32I GATATC 1 cut(s) 751
Eco47I GGWCC 2 cut(s) 7, 41
Eco57I CTGAAG 1 cut(s) 767
Eco91I GGTNACC 1 cut(s) 1141
EcoO109I RGGNCCY 2 cut(s) 41, 537
EcoO65I GGTNACC 1 cut(s) 1141
EcoRII CCWGG 2 cut(s) 925, 1137
EcoRV GATATC 1 cut(s) 751
EcoT14I CCWWGG 3 cut(s) 402, 754, 881
ErhI CCWWGG 3 cut(s) 402, 754, 881
FaeI CATG 7 cut(s) 294, 323, 362, 406, 438, 572, 1178
FalI AAGNNNNNCTT 4 cut(s) 623, 655, 738, 770
FaqI GGGAC 1 cut(s) 27
FatI CATG 7 cut(s) 290, 319, 358, 402, 434, 568, 1174
FauNDI CATATG 1 cut(s) 625
Fnu4HI GCNGC 3 cut(s) 194, 309, 408
FokI GGATG 4 cut(s) 350, 851, 883, 1181
Fsp4HI GCNGC 3 cut(s) 194, 309, 408
FspBI CTAG 4 cut(s) 386, 668, 1031, 1044
GluI GCNGC 3 cut(s) 194, 309, 408
GsuI CTGGAG 1 cut(s) 636
HaeIII GGCC 4 cut(s) 539, 559, 744, 1179
HapII CCGG 1 cut(s) 29
HgaI GACGC 1 cut(s) 200
Hin1II CATG 7 cut(s) 294, 323, 362, 406, 438, 572, 1178
HincII GTYRAC 2 cut(s) 223, 966
HindII GTYRAC 2 cut(s) 223, 966
HinfI GANTC 7 cut(s) 350, 484, 518, 620, 715, 802, 976
HpaII CCGG 1 cut(s) 29
HphI GGTGA 6 cut(s) 158, 380, 766, 833, 923, 1135
Hpy166II GTNNAC 3 cut(s) 215, 223, 966
Hpy188I TCNGA 2 cut(s) 346, 786
Hpy188III TCNNGA 2 cut(s) 44, 481
Hpy8I GTNNAC 3 cut(s) 215, 223, 966
HpyAV CCTTC 5 cut(s) 328, 359, 478, 649, 691
HpyCH4III ACNGT 3 cut(s) 60, 603, 778
HpyCH4IV ACGT 1 cut(s) 610
HpyF10VI GCNNNNNNNGC 5 cut(s) 296, 305, 325, 1010, 1019
HpyF3I CTNAG 1 cut(s) 950
HpySE526I ACGT 1 cut(s) 610
Hsp92II CATG 7 cut(s) 294, 323, 362, 406, 438, 572, 1178
KpnI GGTACC 1 cut(s) 264
Kzo9I GATC 2 cut(s) 52, 877
LmnI GCTCC 3 cut(s) 31, 647, 682
Lsp1109I GCAGC 3 cut(s) 205, 320, 419
LweI GCATC 2 cut(s) 328, 906
MaeI CTAG 4 cut(s) 386, 668, 1031, 1044
MaeII ACGT 1 cut(s) 610
MaeIII GTNAC 2 cut(s) 989, 1141
MalI GATC 2 cut(s) 54, 879
MboI GATC 2 cut(s) 52, 877
MboII GAAGA 4 cut(s) 98, 345, 773, 971
MfeI CAATTG 1 cut(s) 1058
MhlI GDGCHC 2 cut(s) 639, 1038
MlsI TGGCCA 2 cut(s) 744, 1179
MluCI AATT 7 cut(s) 141, 175, 411, 590, 1058, 1108, 1119
MluNI TGGCCA 2 cut(s) 744, 1179
MlyI GAGTC 3 cut(s) 359, 527, 970
MnlI CCTC 4 cut(s) 393, 534, 568, 829
Mox20I TGGCCA 2 cut(s) 744, 1179
MscI TGGCCA 2 cut(s) 744, 1179
MseI TTAA 4 cut(s) 167, 606, 630, 1104
MslI CAYNNNNRTG 1 cut(s) 1148
Msp20I TGGCCA 2 cut(s) 744, 1179
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 2 cut(s) 927, 1139
MssI GTTTAAAC 1 cut(s) 607
MunI CAATTG 1 cut(s) 1058
MvaI CCWGG 2 cut(s) 927, 1139
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 5 cut(s) 296, 305, 325, 1010, 1019
NcoI CCATGG 1 cut(s) 402
NdeI CATATG 1 cut(s) 625
NdeII GATC 2 cut(s) 52, 877
NlaIII CATG 7 cut(s) 294, 323, 362, 406, 438, 572, 1178
NlaIV GGNNCC 4 cut(s) 27, 43, 262, 636
NmuCI GTSAC 1 cut(s) 1141
NspI RCATGY 1 cut(s) 362
NspV TTCGAA 1 cut(s) 982
OliI CACNNNNGTG 1 cut(s) 1148
PciI ACATGT 1 cut(s) 358
PcsI WCGNNNNNNNCGW 1 cut(s) 607
PfeI GAWTC 4 cut(s) 484, 620, 715, 802
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 3 cut(s) 195, 310, 409
PleI GAGTC 3 cut(s) 358, 526, 970
PmeI GTTTAAAC 1 cut(s) 607
PpsI GAGTC 3 cut(s) 358, 526, 970
PpuMI RGGWCCY 1 cut(s) 41
PscI ACATGT 1 cut(s) 358
PsiI TTATAA 1 cut(s) 770
Psp5II RGGWCCY 1 cut(s) 41
Psp6I CCWGG 2 cut(s) 925, 1137
PspEI GGTNACC 1 cut(s) 1141
PspGI CCWGG 2 cut(s) 925, 1137
PspN4I GGNNCC 4 cut(s) 27, 43, 262, 636
PspPI GGNCC 3 cut(s) 7, 41, 537
PspPPI RGGWCCY 1 cut(s) 41
RsaI GTAC 2 cut(s) 262, 798
RsaNI GTAC 2 cut(s) 261, 797
RseI CAYNNNNRTG 1 cut(s) 1148
Rsr2I CGGWCCG 1 cut(s) 7
RsrII CGGWCCG 1 cut(s) 7
SaqAI TTAA 4 cut(s) 167, 606, 630, 1104
SatI GCNGC 3 cut(s) 194, 309, 408
Sau3AI GATC 2 cut(s) 52, 877
Sau96I GGNCC 3 cut(s) 7, 41, 537
SchI GAGTC 3 cut(s) 359, 527, 970
ScrFI CCNGG 2 cut(s) 927, 1139
SduI GDGCHC 2 cut(s) 639, 1038
SfaNI GCATC 2 cut(s) 328, 906
SfcI CTRYAG 2 cut(s) 541, 892
SfuI TTCGAA 1 cut(s) 982
SinI GGWCC 2 cut(s) 7, 41
SmiMI CAYNNNNRTG 1 cut(s) 1148
SmlI CTYRAG 1 cut(s) 806
SmoI CTYRAG 1 cut(s) 806
Sse9I AATT 7 cut(s) 141, 175, 411, 590, 1058, 1108, 1119
SsiI CCGC 2 cut(s) 5, 10
SspMI CTAG 4 cut(s) 386, 668, 1031, 1044
StyD4I CCNGG 2 cut(s) 925, 1137
StyI CCWWGG 3 cut(s) 402, 754, 881
TaaI ACNGT 3 cut(s) 60, 603, 778
TaiI ACGT 1 cut(s) 613
TaqI TCGA 2 cut(s) 480, 982
TasI AATT 7 cut(s) 141, 175, 411, 590, 1058, 1108, 1119
TfiI GAWTC 4 cut(s) 484, 620, 715, 802
Tru1I TTAA 4 cut(s) 167, 606, 630, 1104
Tru9I TTAA 4 cut(s) 167, 606, 630, 1104
TscAI CASTG 2 cut(s) 222, 717
TseFI GTSAC 1 cut(s) 1141
TseI GCWGC 3 cut(s) 193, 308, 407
Tsp45I GTSAC 1 cut(s) 1141
TspDTI ATGAA 4 cut(s) 423, 466, 645, 1087
TspGWI ACGGA 1 cut(s) 883
TspRI CASTG 2 cut(s) 222, 717
Van91I CCANNNNNTGG 1 cut(s) 76
VpaK11BI GGWCC 2 cut(s) 7, 41
XapI RAATTY 1 cut(s) 590
XceI RCATGY 1 cut(s) 362
XcmI CCANNNNNNNNNTGG 2 cut(s) 385, 752
XspI CTAG 4 cut(s) 386, 668, 1031, 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.