Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004484.1

Orthogroup ID

OG0002300

Physical Location & Seq

Genomic Coordinates Reverse (-)

53395 .. 54424

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004484.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atggtttgtgaagacggcgagcctgatgtcgagataggcatacctgctgttatgcttcccaacaaaattggtgaaatcttggaaaatgatttaatgaacaattcagtagtttctgtgcagctatactctccattgcgtccactggttgacattgcagaagtatttttatggcttatggcggttggtaccatcttatttgcttcttattggtctgcatggactgcaagagaagcagctattgagcatgacaagctattgaaggatgcttctgacgagtcttcacatgtggaaggtgaaggtgccagtcctttagtggagattagcaccatggcagcaattctctttgttgtgattgcttcatgcttcttggttatgttttacaaacttatgtccttctggttcatcgagattctggtggtttcattttgcattggtgggatagaggtgcccttgtttggagctgtttcatatttgacactagctgtcgctcccttctgcatagcatttgctgttgtttgggcagtgaatcgccgtgtgtcatttgcttggattggccaagatattcttgtaagaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

192

Amino Acids

21.17

Weight (kDa)

4.31

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01650 AT1G01650 AT1G01650 AT1G01650
fragaria_vesca	FvH4_7g14350 FvH4_7g14350 FvH4_7g14350 FvH4_7g14350 FvH4_7g14350
malus_domestica	MD01G1061500.v1.1 MD07G1136600.v1.1
prunus_persica	Prupe.2G171000_v2.0.a1 Prupe.2G171000_v2.0.a1
pyrus_communis	pycom01g09170 pycom07g13430
rosa_chinensis	RchiOBHm_Chr1g0355371
rosa_laevigata	RLG00000028134 RLG00000028139 RLG00000028145 RLG00000028149
rosa_multiflora	Rmu_sc0004484.1_g000010 Rmu_sc0021229.1_g000001
rosa_roxburghii	Rroxscaffold_4G00300080 Rroxscaffold_4G00300120 Rroxscaffold_4G00300280 Rroxscaffold_4G00300370 Rroxscaffold_4G00300460
rosa_rugosa	Rorug01G0246900
rosa_samantha	Rh1AG259400 Rh1AG259500 Rh1AG259800 Rh1AG260300 Rh1AG260900 Rh1BG229000 Rh1BG229200 Rh1CG243400 Rh1CG243500 Rh1DG256900
rosa_wichuraiana	Rw1G020180 Rw1G022870 Rw1G022900 Rw1G022920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	52
Acc65I	GGTACC	1 cut(s)	185
AccB1I	GGYRCC	3 cut(s)	185, 299, 445
AciI	CCGC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	553
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	5 cut(s)	121, 236, 253, 461, 482
AluI	AGCT	5 cut(s)	121, 236, 253, 461, 482
AoxI	GGCC	1 cut(s)	553
ApeKI	GCWGC	3 cut(s)	118, 233, 332
Asp718I	GGTACC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	83, 305
BaeGI	GKGCMC	1 cut(s)	450
BalI	TGGCCA	1 cut(s)	555
BanI	GGYRCC	3 cut(s)	185, 299, 445
BbsI	GAAGAC	2 cut(s)	18, 270
BbvI	GCAGC	3 cut(s)	130, 245, 344
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	2 cut(s)	31, 516
BfaI	CTAG	2 cut(s)	479, 577
BfuAI	ACCTGC	1 cut(s)	52
BisI	GCNGC	3 cut(s)	119, 234, 333
BlsI	GCNGC	3 cut(s)	120, 235, 334
BmiI	GGNNCC	3 cut(s)	187, 301, 447
BmsI	GCATC	1 cut(s)	253
BpiI	GAAGAC	2 cut(s)	18, 270
BsaJI	CCNNGG	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse1I	ACTGG	2 cut(s)	147, 303
Bse3DI	GCAATG	2 cut(s)	131, 150
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMI	GCAATG	2 cut(s)	131, 150
BseNI	ACTGG	2 cut(s)	147, 303
BseSI	GKGCMC	1 cut(s)	450
BseXI	GCAGC	3 cut(s)	130, 245, 344
BsgI	GTGCAG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	555
BshNI	GGYRCC	3 cut(s)	185, 299, 445
BslI	CCNNNNNNNGG	1 cut(s)	455
BsnI	GGCC	1 cut(s)	555
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	555
BspLI	GGNNCC	3 cut(s)	187, 301, 447
BspMI	ACCTGC	1 cut(s)	52
BspT107I	GGYRCC	3 cut(s)	185, 299, 445
BsrDI	GCAATG	2 cut(s)	131, 150
BsrI	ACTGG	2 cut(s)	147, 303
BssECI	CCNNGG	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	20
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 230, 250
BstNSI	RCATGY	1 cut(s)	287
BstSLI	GKGCMC	1 cut(s)	450
BstV1I	GCAGC	3 cut(s)	130, 245, 344
BstV2I	GAAGAC	2 cut(s)	18, 270
BsuRI	GGCC	1 cut(s)	555
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	268
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	2 cut(s)	140, 528
BveI	ACCTGC	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	20
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	5 cut(s)	216, 245, 284, 328, 360
CviJI	RGCY	8 cut(s)	22, 121, 172, 236, 253, 461, 482, 555
CviKI_1	RGCY	8 cut(s)	22, 121, 172, 236, 253, 461, 482, 555
CviQI	GTAC	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	5 cut(s)	219, 248, 287, 331, 363
FalI	AAGNNNNNCTT	1 cut(s)	549
FatI	CATG	5 cut(s)	215, 244, 283, 327, 359
Fnu4HI	GCNGC	3 cut(s)	119, 234, 333
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	3 cut(s)	119, 234, 333
FspBI	CTAG	2 cut(s)	479, 577
GluI	GCNGC	3 cut(s)	119, 234, 333
HaeIII	GGCC	1 cut(s)	555
HgaI	GACGC	1 cut(s)	125
Hin1II	CATG	5 cut(s)	219, 248, 287, 331, 363
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	3 cut(s)	275, 409, 526
HphI	GGTGA	2 cut(s)	83, 305
Hpy166II	GTNNAC	2 cut(s)	140, 148
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	2 cut(s)	31, 406
Hpy8I	GTNNAC	2 cut(s)	140, 148
HpyAV	CCTTC	5 cut(s)	253, 284, 290, 403, 502
HpyCH4V	TGCA	6 cut(s)	118, 155, 215, 224, 429, 498
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 230, 250
Hsp92II	CATG	5 cut(s)	219, 248, 287, 331, 363
KpnI	GGTACC	1 cut(s)	189
LmnI	GCTCC	2 cut(s)	458, 493
LpnPI	CCDG	6 cut(s)	36, 57, 128, 316, 382, 398
Lsp1109I	GCAGC	3 cut(s)	130, 245, 344
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	479, 577
MboII	GAAGA	2 cut(s)	23, 270
MhlI	GDGCHC	1 cut(s)	450
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	3 cut(s)	66, 100, 336
MluNI	TGGCCA	1 cut(s)	555
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	1 cut(s)	436
Mox20I	TGGCCA	1 cut(s)	555
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	555
MwoI	GCNNNNNNNGC	3 cut(s)	221, 230, 250
NcoI	CCATGG	1 cut(s)	327
NlaIII	CATG	5 cut(s)	219, 248, 287, 331, 363
NlaIV	GGNNCC	3 cut(s)	187, 301, 447
NspI	RCATGY	1 cut(s)	287
PciI	ACATGT	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	409, 526
PkrI	GCNGC	3 cut(s)	120, 235, 334
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PscI	ACATGT	1 cut(s)	283
PspN4I	GGNNCC	3 cut(s)	187, 301, 447
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	3 cut(s)	119, 234, 333
SchI	GAGTC	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	450
SetI	ASST	9 cut(s)	46, 123, 238, 255, 295, 301, 447, 463, 484
SfaNI	GCATC	1 cut(s)	253
Sse9I	AATT	3 cut(s)	66, 100, 336
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	2 cut(s)	479, 577
StyI	CCWWGG	1 cut(s)	327
TaqI	TCGA	2 cut(s)	30, 405
TasI	AATT	3 cut(s)	66, 100, 336
TfiI	GAWTC	2 cut(s)	409, 526
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	2 cut(s)	147, 528
TseI	GCWGC	3 cut(s)	118, 233, 332
TspDTI	ATGAA	5 cut(s)	110, 348, 391, 411, 456
TspRI	CASTG	2 cut(s)	147, 528
XceI	RCATGY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XspI	CTAG	2 cut(s)	479, 577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.