Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002300

Physical Location & Seq

Genomic Coordinates Forward (+)

48202043 .. 48212723

Gene Structure 10681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG260300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGTTTGTGAAGACGACGAGCCTGATGTCGAGATAGGCATACCTGCTGTTATGCTTCCCAACAAAATTGGTGAAATCTTGGAAAATGGATTAACGAACAATTCCATAGTTTCTGTGCAGCTATACTCTCCATTGCGTCCACTGGTTGACATTGCAGAAGTATTTTTATGGCTTATGGCTGTTGGTACCATCTTATTTGCTTCTTATTGGTCTGCATGGACTGCAAGAGAAGCAGCTATTGAGCATGAAAAGCTATTGAAGGATGCTTCTGACGAGTCTTCACATGTGGAAGGTGAAGGTGCCAGTCCTCTAGTGGAGATTAGCACCATGGCAGCAATTCTCTTTGTTGTGATTGCTTCATGCTTCTTGGTTATGTTTTACAAACTTATGTCCTTCTGGTTCATCGAGATTCTGGTGGTTTTGTTTTGCATTGGGGGGATAGAGGTGCCCTTCTTTGGAGCTGTTTCATATTTGACACTAGCTGTCGCTCCCTTCTGCATAGCATTTGCTGTTGTTTGGGCAGTGTATCGCCGTGTGTCATTTGCTTGGATTGGGCAAGATATCCTTGGTATTGCACTGATAATCACTGTTCTTCAGATTGTTCGCGTACCGAATCTCAAGGTTGGAACAGTTCTTCTCGGTTGTGCCTTTTTTTATGACATCTTCTGGGTATTTGTTTCTAAATGGTGGTTCCATGAGAGTGTCATGATAGTGGTGGCTCGTGGTGATAAAAGTGGAGAGGATGGTATCCCAATGCTACTAAAAATCCCACGGATGTTTGATCCTTGGGGTGGCTACAGCATCATCGGGTTTGGTGATATTATCTTACCTGGATTGGTTGTAGCCTTTTCACTAAGGTATGATTGGTTGACAAATAAGACTCTTCGAACGGGTTACTTTGTGTGGGCAATGACAGCTTATGGTGCAGGTCTCCTGGTCACCTATGTGGCTTTGAACTTGATGGATGGACATGGCCAACCTGCTTTGTTATACATAGTTCCATTCACACTCGGTACCTTTTTAACCTTGGGACAGATGAGAGGTGACCTCAAAGTTCTGTGGACAAGAGGAGAACCAGAGAGGCCTTGCCCGCACGTACGACTCCAATCCTCTCACTCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

374

Amino Acids

41.64

Weight (kDa)

5.01

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_A22B	PF04258	104 - 148	5.3e-06	Signal peptide peptidase
Peptidase_A22B	PF04258	149 - 358	6.1e-85	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01650 AT1G01650 AT1G01650 AT1G01650
fragaria_vesca	FvH4_7g14350 FvH4_7g14350 FvH4_7g14350 FvH4_7g14350 FvH4_7g14350
malus_domestica	MD01G1061500.v1.1 MD07G1136600.v1.1
prunus_persica	Prupe.2G171000_v2.0.a1 Prupe.2G171000_v2.0.a1
pyrus_communis	pycom01g09170 pycom07g13430
rosa_chinensis	RchiOBHm_Chr1g0355371
rosa_laevigata	RLG00000028134 RLG00000028139 RLG00000028145 RLG00000028149
rosa_multiflora	Rmu_sc0004484.1_g000010 Rmu_sc0021229.1_g000001
rosa_roxburghii	Rroxscaffold_4G00300080 Rroxscaffold_4G00300120 Rroxscaffold_4G00300280 Rroxscaffold_4G00300370 Rroxscaffold_4G00300460
rosa_rugosa	Rorug01G0246900
rosa_samantha	Rh1AG259400 Rh1AG259500 Rh1AG259800 Rh1AG260300 Rh1AG260900 Rh1BG229000 Rh1BG229200 Rh1CG243400 Rh1CG243500 Rh1DG256900
rosa_wichuraiana	Rw1G020180 Rw1G022870 Rw1G022900 Rw1G022920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	52, 917, 988
Acc65I	GGTACC	2 cut(s)	185, 1013
AccB1I	GGYRCC	4 cut(s)	185, 299, 445, 1013
AccII	CGCG	1 cut(s)	606
AciI	CCGC	1 cut(s)	1091
AclWI	GGATC	1 cut(s)	776
AcoI	YGGCCR	1 cut(s)	973
AcuI	CTGAAG	1 cut(s)	578
AfaI	GTAC	4 cut(s)	187, 609, 1015, 1098
AfiI	CCNNNNNNNGG	2 cut(s)	455, 791
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	2 cut(s)	259, 955
AjnI	CCWGG	2 cut(s)	829, 933
AleI	CACNNNNGTG	1 cut(s)	944
AluBI	AGCT	6 cut(s)	121, 236, 253, 461, 482, 917
AluI	AGCT	6 cut(s)	121, 236, 253, 461, 482, 917
Alw26I	GTCTC	1 cut(s)	935
AlwI	GGATC	1 cut(s)	776
AoxI	GGCC	2 cut(s)	973, 1082
ApeKI	GCWGC	3 cut(s)	118, 233, 332
Asp718I	GGTACC	2 cut(s)	185, 1013
AsuHPI	GGTGA	6 cut(s)	83, 305, 737, 827, 931, 1055
AsuII	TTCGAA	1 cut(s)	886
BaeGI	GKGCMC	1 cut(s)	450
BalI	TGGCCA	1 cut(s)	975
BanI	GGYRCC	4 cut(s)	185, 299, 445, 1013
BauI	CACGAG	1 cut(s)	720
BbsI	GAAGAC	2 cut(s)	18, 270
BbvI	GCAGC	3 cut(s)	130, 245, 344
BccI	CCATC	4 cut(s)	197, 737, 955, 959
BceAI	ACGGC	1 cut(s)	516
BciT130I	CCWGG	2 cut(s)	831, 935
BciVI	GTATCC	1 cut(s)	758
BcoDI	GTCTC	1 cut(s)	935
BfaI	CTAG	2 cut(s)	311, 479
BfmI	CTRYAG	1 cut(s)	796
BfuAI	ACCTGC	3 cut(s)	52, 917, 988
BfuI	GTATCC	1 cut(s)	758
BisI	GCNGC	3 cut(s)	119, 234, 333
BlsI	GCNGC	3 cut(s)	120, 235, 334
Bme1390I	CCNGG	2 cut(s)	831, 935
BmiI	GGNNCC	5 cut(s)	187, 301, 447, 692, 1015
BmrFI	CCNGG	2 cut(s)	831, 935
BmsI	GCATC	2 cut(s)	253, 810
BpiI	GAAGAC	2 cut(s)	18, 270
BplI	GAGNNNNNCTC	2 cut(s)	1032, 1064
Bpu14I	TTCGAA	1 cut(s)	886
BpuEI	CTTGAG	1 cut(s)	602
BsaAI	YACGTR	1 cut(s)	1096
BsaI	GGTCTC	1 cut(s)	935
BsaJI	CCNNGG	5 cut(s)	327, 565, 770, 785, 1026
Bsc4I	CCNNNNNNNGG	2 cut(s)	455, 791
Bse1I	ACTGG	2 cut(s)	147, 303
Bse3DI	GCAATG	3 cut(s)	131, 150, 915
BseBI	CCWGG	2 cut(s)	831, 935
BseDI	CCNNGG	5 cut(s)	327, 565, 770, 785, 1026
BseGI	GGATG	4 cut(s)	268, 748, 780, 970
BseLI	CCNNNNNNNGG	2 cut(s)	455, 791
BseMI	GCAATG	3 cut(s)	131, 150, 915
BseNI	ACTGG	2 cut(s)	147, 303
BseRI	GAGGAG	1 cut(s)	1083
BseSI	GKGCMC	1 cut(s)	450
BseXI	GCAGC	3 cut(s)	130, 245, 344
BsgI	GTGCAG	2 cut(s)	137, 945
Bsh1236I	CGCG	1 cut(s)	606
BshFI	GGCC	2 cut(s)	975, 1084
BshNI	GGYRCC	4 cut(s)	185, 299, 445, 1013
BsiWI	CGTACG	1 cut(s)	1096
BslFI	GGGAC	1 cut(s)	1044
BslI	CCNNNNNNNGG	2 cut(s)	455, 791
BsmAI	GTCTC	1 cut(s)	935
BsmFI	GGGAC	1 cut(s)	1044
BsnI	GGCC	2 cut(s)	975, 1084
Bso31I	GGTCTC	1 cut(s)	935
Bsp119I	TTCGAA	1 cut(s)	886
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	1 cut(s)	781
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	1 cut(s)	1091
BspANI	GGCC	2 cut(s)	975, 1084
BspFNI	CGCG	1 cut(s)	606
BspHI	TCATGA	1 cut(s)	705
BspLI	GGNNCC	5 cut(s)	187, 301, 447, 692, 1015
BspMI	ACCTGC	3 cut(s)	52, 917, 988
BspPI	GGATC	1 cut(s)	776
BspT104I	TTCGAA	1 cut(s)	886
BspT107I	GGYRCC	4 cut(s)	185, 299, 445, 1013
BspTNI	GGTCTC	1 cut(s)	935
BsrDI	GCAATG	3 cut(s)	131, 150, 915
BsrI	ACTGG	2 cut(s)	147, 303
BssECI	CCNNGG	5 cut(s)	327, 565, 770, 785, 1026
BssMI	GATC	1 cut(s)	781
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	4 cut(s)	327, 565, 785, 1026
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	2 cut(s)	831, 935
Bst4CI	ACNGT	2 cut(s)	589, 631
Bst6I	CTCTTC	1 cut(s)	888
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstBAI	YACGTR	1 cut(s)	1096
BstBI	TTCGAA	1 cut(s)	886
BstC8I	GCNNGC	1 cut(s)	1091
BstDEI	CTNAG	1 cut(s)	854
BstDSI	CCRYGG	2 cut(s)	327, 770
BstEII	GGTNACC	2 cut(s)	937, 1043
BstF5I	GGATG	4 cut(s)	268, 748, 780, 970
BstFNI	CGCG	1 cut(s)	606
BstKTI	GATC	1 cut(s)	784
BstMAI	GTCTC	1 cut(s)	935
BstMBI	GATC	1 cut(s)	781
BstMWI	GCNNNNNNNGC	6 cut(s)	221, 230, 250, 914, 923, 1090
BstNI	CCWGG	2 cut(s)	831, 935
BstNSI	RCATGY	1 cut(s)	287
BstPI	GGTNACC	2 cut(s)	937, 1043
BstSCI	CCNGG	2 cut(s)	829, 933
BstSFI	CTRYAG	1 cut(s)	796
BstSLI	GKGCMC	1 cut(s)	450
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	3 cut(s)	130, 245, 344
BstV2I	GAAGAC	2 cut(s)	18, 270
BsuI	GTATCC	1 cut(s)	758
BsuRI	GGCC	2 cut(s)	975, 1084
BtgI	CCRYGG	2 cut(s)	327, 770
BtsCI	GGATG	4 cut(s)	268, 748, 780, 970
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	4 cut(s)	140, 528, 575, 585
BveI	ACCTGC	3 cut(s)	52, 917, 988
Cac8I	GCNNGC	1 cut(s)	1091
CciI	TCATGA	1 cut(s)	705
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	4 cut(s)	186, 608, 1014, 1097
CviAII	CATG	8 cut(s)	216, 245, 284, 328, 360, 695, 706, 971
CviQI	GTAC	4 cut(s)	186, 608, 1014, 1097
DdeI	CTNAG	1 cut(s)	854
DpnI	GATC	1 cut(s)	783
DpnII	GATC	1 cut(s)	781
EaeI	YGGCCR	1 cut(s)	973
Eam1104I	CTCTTC	1 cut(s)	888
EarI	CTCTTC	1 cut(s)	888
Eco130I	CCWWGG	4 cut(s)	327, 565, 785, 1026
Eco147I	AGGCCT	1 cut(s)	1084
Eco31I	GGTCTC	1 cut(s)	935
Eco32I	GATATC	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	578
Eco91I	GGTNACC	2 cut(s)	937, 1043
EcoO65I	GGTNACC	2 cut(s)	937, 1043
EcoRII	CCWGG	2 cut(s)	829, 933
EcoRV	GATATC	1 cut(s)	562
EcoT14I	CCWWGG	4 cut(s)	327, 565, 785, 1026
ErhI	CCWWGG	4 cut(s)	327, 565, 785, 1026
FaeI	CATG	8 cut(s)	219, 248, 287, 331, 363, 698, 709, 974
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FaqI	GGGAC	1 cut(s)	1044
FatI	CATG	8 cut(s)	215, 244, 283, 327, 359, 694, 705, 970
FauI	CCCGC	1 cut(s)	1098
Fnu4HI	GCNGC	3 cut(s)	119, 234, 333
FokI	GGATG	4 cut(s)	275, 755, 787, 977
Fsp4HI	GCNGC	3 cut(s)	119, 234, 333
FspBI	CTAG	2 cut(s)	311, 479
GluI	GCNGC	3 cut(s)	119, 234, 333
HaeIII	GGCC	2 cut(s)	975, 1084
HgaI	GACGC	1 cut(s)	125
Hin1II	CATG	8 cut(s)	219, 248, 287, 331, 363, 698, 709, 974
HincII	GTYRAC	2 cut(s)	148, 870
HindII	GTYRAC	2 cut(s)	148, 870
HinfI	GANTC	5 cut(s)	275, 409, 613, 880, 1101
HphI	GGTGA	6 cut(s)	83, 305, 737, 827, 931, 1055
Hpy166II	GTNNAC	4 cut(s)	140, 148, 870, 1062
Hpy188I	TCNGA	2 cut(s)	271, 597
Hpy188III	TCNNGA	3 cut(s)	31, 406, 706
Hpy8I	GTNNAC	4 cut(s)	140, 148, 870, 1062
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	6 cut(s)	253, 284, 290, 403, 460, 502
HpyCH4III	ACNGT	2 cut(s)	589, 631
HpyCH4IV	ACGT	1 cut(s)	1095
HpyCH4V	TGCA	8 cut(s)	118, 155, 215, 224, 429, 498, 575, 926
HpyF10VI	GCNNNNNNNGC	6 cut(s)	221, 230, 250, 914, 923, 1090
HpyF3I	CTNAG	1 cut(s)	854
HpySE526I	ACGT	1 cut(s)	1095
Hsp92II	CATG	8 cut(s)	219, 248, 287, 331, 363, 698, 709, 974
KpnI	GGTACC	2 cut(s)	189, 1017
Kzo9I	GATC	1 cut(s)	781
LmnI	GCTCC	2 cut(s)	458, 493
Lsp1109I	GCAGC	3 cut(s)	130, 245, 344
LweI	GCATC	2 cut(s)	253, 810
MaeI	CTAG	2 cut(s)	311, 479
MaeII	ACGT	1 cut(s)	1095
MaeIII	GTNAC	3 cut(s)	893, 937, 1043
MalI	GATC	1 cut(s)	783
MboI	GATC	1 cut(s)	781
MboII	GAAGA	6 cut(s)	23, 270, 584, 626, 655, 875
MhlI	GDGCHC	1 cut(s)	450
MlsI	TGGCCA	1 cut(s)	975
MluCI	AATT	3 cut(s)	66, 100, 336
MluNI	TGGCCA	1 cut(s)	975
MlyI	GAGTC	3 cut(s)	284, 874, 1095
MmeI	TCCRAC	1 cut(s)	604
MnlI	CCTC	8 cut(s)	318, 436, 733, 1034, 1058, 1061, 1074, 1120
Mox20I	TGGCCA	1 cut(s)	975
MscI	TGGCCA	1 cut(s)	975
MseI	TTAA	2 cut(s)	92, 1022
MslI	CAYNNNNRTG	3 cut(s)	699, 710, 944
Msp20I	TGGCCA	1 cut(s)	975
MspR9I	CCNGG	2 cut(s)	831, 935
MvaI	CCWGG	2 cut(s)	831, 935
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	6 cut(s)	221, 230, 250, 914, 923, 1090
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	1 cut(s)	781
NlaIII	CATG	8 cut(s)	219, 248, 287, 331, 363, 698, 709, 974
NlaIV	GGNNCC	5 cut(s)	187, 301, 447, 692, 1015
NmuCI	GTSAC	2 cut(s)	937, 1043
NspI	RCATGY	1 cut(s)	287
NspV	TTCGAA	1 cut(s)	886
OliI	CACNNNNGTG	1 cut(s)	944
PagI	TCATGA	1 cut(s)	705
PceI	AGGCCT	1 cut(s)	1084
PciI	ACATGT	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	409, 613
Pfl23II	CGTACG	1 cut(s)	1096
PkrI	GCNGC	3 cut(s)	120, 235, 334
PleI	GAGTC	3 cut(s)	283, 874, 1095
PpsI	GAGTC	3 cut(s)	283, 874, 1095
Ppu21I	YACGTR	1 cut(s)	1096
PscI	ACATGT	1 cut(s)	283
Psp6I	CCWGG	2 cut(s)	829, 933
PspEI	GGTNACC	2 cut(s)	937, 1043
PspGI	CCWGG	2 cut(s)	829, 933
PspLI	CGTACG	1 cut(s)	1096
PspN4I	GGNNCC	5 cut(s)	187, 301, 447, 692, 1015
RsaI	GTAC	4 cut(s)	187, 609, 1015, 1098
RsaNI	GTAC	4 cut(s)	186, 608, 1014, 1097
RseI	CAYNNNNRTG	3 cut(s)	699, 710, 944
SaqAI	TTAA	2 cut(s)	92, 1022
SatI	GCNGC	3 cut(s)	119, 234, 333
Sau3AI	GATC	1 cut(s)	781
SchI	GAGTC	3 cut(s)	284, 874, 1095
ScrFI	CCNGG	2 cut(s)	831, 935
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	2 cut(s)	253, 810
SfcI	CTRYAG	1 cut(s)	796
SfuI	TTCGAA	1 cut(s)	886
SmiMI	CAYNNNNRTG	3 cut(s)	699, 710, 944
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	3 cut(s)	66, 100, 336
SseBI	AGGCCT	1 cut(s)	1084
SsiI	CCGC	1 cut(s)	1091
SspMI	CTAG	2 cut(s)	311, 479
StuI	AGGCCT	1 cut(s)	1084
StyD4I	CCNGG	2 cut(s)	829, 933
StyI	CCWWGG	4 cut(s)	327, 565, 785, 1026
TaaI	ACNGT	2 cut(s)	589, 631
TaiI	ACGT	1 cut(s)	1098
TaqI	TCGA	3 cut(s)	30, 405, 886
TasI	AATT	3 cut(s)	66, 100, 336
TfiI	GAWTC	2 cut(s)	409, 613
Tru1I	TTAA	2 cut(s)	92, 1022
Tru9I	TTAA	2 cut(s)	92, 1022
TscAI	CASTG	4 cut(s)	147, 528, 582, 592
TseFI	GTSAC	2 cut(s)	937, 1043
TseI	GCWGC	3 cut(s)	118, 233, 332
Tsp45I	GTSAC	2 cut(s)	937, 1043
TspDTI	ATGAA	4 cut(s)	261, 348, 391, 456
TspGWI	ACGGA	1 cut(s)	787
TspRI	CASTG	4 cut(s)	147, 528, 582, 592
XceI	RCATGY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XspI	CTAG	2 cut(s)	311, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.