Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002300

Physical Location & Seq

Genomic Coordinates Reverse (-)

19256681 .. 19258433

Gene Structure 1753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028139

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCTGAATCGGCTAATGGTTCAGCCATCCTCATCATAAATAACCGTCCAGAACTTTTCAAGATGGTTTGTGAAGACGATAAGCCTGATGTCAAGATAGGCATACCTGCTGTTATGCTTCCCAACAAAATTGGTGAAATCTTGGAAAATGGATTAAGGAACAATTCCATAGTTTCTGTGCAGCTGTTCTCTCCATTGCGTCCACTGGTTGACATTGCAGCAGTATTTTTATGGCTTATGGCTGTTGGTACCATCTTATTTGCTTCTTATTGGTCTGCATGGACTGCAAGAGAAGCAGCTATTGAGCATGACAAGATATTGAAGGATGCTTCCGACGAGTCTTCACATATGGAAGGAGAAGTTGCCAGTCCTCTAGTGGAGATTAGCACCAAGGCAGCAATTCTCTTTGTTGTCATTGCTTCATGCTTCTTGGTTATGTTTTACAAACTTATGTCCTTCTGGTTCATCGAGATTCTGGTGGTTTTGTTTTGCATTGGTGGGATAGAGCTTGCAAACTATAAGAAGGCAAAGTATGTTGGTTACTTGGGTCACATTGCCAATGCGTACCAGCACTTCTTTAAGAAACACTTTTACTTAGAAGTGGTTTTTGGAAGCAATGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

209

Amino Acids

23.2

Weight (kDa)

5.73

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_A22B	PF04258	125 - 169	4.1e-08	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01650 AT1G01650 AT1G01650 AT1G01650
fragaria_vesca	FvH4_7g14350 FvH4_7g14350 FvH4_7g14350 FvH4_7g14350 FvH4_7g14350
malus_domestica	MD01G1061500.v1.1 MD07G1136600.v1.1
prunus_persica	Prupe.2G171000_v2.0.a1 Prupe.2G171000_v2.0.a1
pyrus_communis	pycom01g09170 pycom07g13430
rosa_chinensis	RchiOBHm_Chr1g0355371
rosa_laevigata	RLG00000028134 RLG00000028139 RLG00000028145 RLG00000028149
rosa_multiflora	Rmu_sc0004484.1_g000010 Rmu_sc0021229.1_g000001
rosa_roxburghii	Rroxscaffold_4G00300080 Rroxscaffold_4G00300120 Rroxscaffold_4G00300280 Rroxscaffold_4G00300370 Rroxscaffold_4G00300460
rosa_rugosa	Rorug01G0246900
rosa_samantha	Rh1AG259400 Rh1AG259500 Rh1AG259800 Rh1AG260300 Rh1AG260900 Rh1BG229000 Rh1BG229200 Rh1CG243400 Rh1CG243500 Rh1DG256900
rosa_wichuraiana	Rw1G020180 Rw1G022870 Rw1G022900 Rw1G022920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	115
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AfaI	GTAC	2 cut(s)	250, 566
AgsI	TTSAA	2 cut(s)	61, 322
AjuI	GAANNNNNNNTTGG	2 cut(s)	591, 623
AluBI	AGCT	3 cut(s)	184, 299, 508
AluI	AGCT	3 cut(s)	184, 299, 508
ApeKI	GCWGC	4 cut(s)	181, 218, 296, 395
Asp718I	GGTACC	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	248
BarI	GAAGNNNNNNTAC	2 cut(s)	557, 589
BbsI	GAAGAC	2 cut(s)	81, 333
BbvI	GCAGC	4 cut(s)	193, 230, 308, 407
BccI	CCATC	3 cut(s)	35, 58, 260
BfaI	CTAG	1 cut(s)	374
BfuAI	ACCTGC	1 cut(s)	115
BisI	GCNGC	4 cut(s)	182, 219, 297, 396
BlsI	GCNGC	4 cut(s)	183, 220, 298, 397
BmiI	GGNNCC	1 cut(s)	250
BmsI	GCATC	1 cut(s)	316
BpiI	GAAGAC	2 cut(s)	81, 333
BsaJI	CCNNGG	1 cut(s)	390
Bse1I	ACTGG	2 cut(s)	210, 366
Bse3DI	GCAATG	5 cut(s)	194, 213, 414, 552, 622
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	2 cut(s)	27, 331
BseMI	GCAATG	5 cut(s)	194, 213, 414, 552, 622
BseNI	ACTGG	2 cut(s)	210, 366
BseXI	GCAGC	4 cut(s)	193, 230, 308, 407
BsgI	GTGCAG	1 cut(s)	200
BshNI	GGYRCC	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	248
BsrDI	GCAATG	5 cut(s)	194, 213, 414, 552, 622
BsrI	ACTGG	2 cut(s)	210, 366
BssECI	CCNNGG	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	47
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	1 cut(s)	595
BstF5I	GGATG	2 cut(s)	27, 331
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 284, 293
BstV1I	GCAGC	4 cut(s)	193, 230, 308, 407
BstV2I	GAAGAC	2 cut(s)	81, 333
BtsCI	GGATG	2 cut(s)	27, 331
BtsIMutI	CAGTG	1 cut(s)	203
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	510
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	249, 565
CviAII	CATG	3 cut(s)	279, 308, 423
CviJI	RGCY	9 cut(s)	5, 14, 26, 85, 184, 235, 242, 299, 508
CviKI_1	RGCY	9 cut(s)	5, 14, 26, 85, 184, 235, 242, 299, 508
CviQI	GTAC	2 cut(s)	249, 565
DdeI	CTNAG	1 cut(s)	595
Eco130I	CCWWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	3 cut(s)	282, 311, 426
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FatI	CATG	3 cut(s)	278, 307, 422
FauNDI	CATATG	1 cut(s)	348
Fnu4HI	GCNGC	4 cut(s)	182, 219, 297, 396
FokI	GGATG	2 cut(s)	14, 338
Fsp4HI	GCNGC	4 cut(s)	182, 219, 297, 396
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	4 cut(s)	182, 219, 297, 396
HgaI	GACGC	1 cut(s)	188
Hin1II	CATG	3 cut(s)	282, 311, 426
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	3 cut(s)	8, 338, 472
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	203, 211
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	4 cut(s)	50, 61, 94, 469
Hpy8I	GTNNAC	2 cut(s)	203, 211
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	4 cut(s)	316, 347, 466, 517
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	7 cut(s)	181, 218, 278, 287, 492, 512, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 284, 293
HpyF3I	CTNAG	1 cut(s)	595
Hsp92II	CATG	3 cut(s)	282, 311, 426
KpnI	GGTACC	1 cut(s)	252
LpnPI	CCDG	8 cut(s)	63, 99, 120, 191, 379, 445, 461, 581
Lsp1109I	GCAGC	4 cut(s)	193, 230, 308, 407
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	374
MaeIII	GTNAC	2 cut(s)	539, 548
MboII	GAAGA	2 cut(s)	86, 333
MluCI	AATT	4 cut(s)	129, 163, 399, 622
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	2 cut(s)	41, 381
MseI	TTAA	3 cut(s)	155, 579, 625
MspA1I	CMGCKG	1 cut(s)	184
MwoI	GCNNNNNNNGC	3 cut(s)	11, 284, 293
NdeI	CATATG	1 cut(s)	348
NlaIII	CATG	3 cut(s)	282, 311, 426
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	548
PfeI	GAWTC	2 cut(s)	8, 472
PkrI	GCNGC	4 cut(s)	183, 220, 298, 397
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	184
RsaI	GTAC	2 cut(s)	250, 566
RsaNI	GTAC	2 cut(s)	249, 565
SaqAI	TTAA	3 cut(s)	155, 579, 625
SatI	GCNGC	4 cut(s)	182, 219, 297, 396
SchI	GAGTC	1 cut(s)	347
SetI	ASST	4 cut(s)	109, 186, 301, 510
SfaNI	GCATC	1 cut(s)	316
Sse9I	AATT	4 cut(s)	129, 163, 399, 622
SspMI	CTAG	1 cut(s)	374
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	468
TasI	AATT	4 cut(s)	129, 163, 399, 622
TfiI	GAWTC	2 cut(s)	8, 472
Tru1I	TTAA	3 cut(s)	155, 579, 625
Tru9I	TTAA	3 cut(s)	155, 579, 625
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	4 cut(s)	181, 218, 296, 395
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	2 cut(s)	411, 454
TspRI	CASTG	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.