Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002300

Physical Location & Seq

Genomic Coordinates Forward (+)

34923261 .. 34938600

Gene Structure 15340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG229200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAACAATTCCATAGTTTCTGTGCAGCTATACTCTCCATTGCGTCCACTGGTTGACATTGCAGAAGTATTTTTATGGCTTATGGCTGTTGGTACCATCTTATTTGCTTCTTATTGGTCTGCATGGACTGCAAGAGAAGCAGCTATTGAGCATGACAAGCTATTGAAGGATGCTTCTGACGAGTCTTCACATGTGGAAGGTGAAGGTGCCAGTCCTCTAGTGGAGATTAGCACCATGGCAGCAATTCTCTTTGTTGTGATTGCTTCATGCTTCTTGACTTGCTTGGTGGCCTTGCTATCATGTTTCAGACGGTTTAAACGTGCTGGAGAATCATATGTTAAGGTGCCCTTCTTTGAAGCTGTTTCATATTTGACACTAGCTGTCGCTCCCTTCTGCATAGCATTTGCTGTTGTTTGGGCAGTGTATCGCCGTGTGTCATTTGCTTGGATTGGCCAAGATATCCTTGGTATTGCACTGATAATCACCGTTCTTCAGATTGTTCGCGTACCGAATCTCAAGGTTGGAACAGTTCTTCTCGGTTGTGCCTTTTTTTATGACATCTTCTGGGTATTTGTTTCTAAATGGTGGTTCCATGAGAGTGTCATGATAGTGGTGGCTCGTGGTGATAAAAGTGGAGAGGATGGTATCCCAATGCTACTAAAAATCCCACGGATGTTTGATCCTTGGGGTGGCTACAGCATCATCGGGTTTGGTGATATTATCTTACCTGGATTGGTTGTAGCCTTTTCACTAAGGTATGATTGGTTGACAAATAAGACTCTTCGAACGGGTTACTTTGTGTGGGCAATGACAGCTTATGGTGTAGGTCTCCTGGTCACCTATGTGGCTTTGAACTTGATGGATGGACATGGCCAACCTGCTTTGTTATACATAGTCCCATTCACACTTGGTAAGATTCTAAGCTTGGATAATCTGGCAGTAACATGCATAGTGTGCCTCCGACCTTTCTGCGCTAAATTATTCATAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

330

Amino Acids

36.7

Weight (kDa)

6.88

Isoelectric Point (pI)

30.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_A22B	PF04258	79 - 308	1.1e-81	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01650 AT1G01650 AT1G01650 AT1G01650
fragaria_vesca	FvH4_7g14350 FvH4_7g14350 FvH4_7g14350 FvH4_7g14350 FvH4_7g14350
malus_domestica	MD01G1061500.v1.1 MD07G1136600.v1.1
prunus_persica	Prupe.2G171000_v2.0.a1 Prupe.2G171000_v2.0.a1
pyrus_communis	pycom01g09170 pycom07g13430
rosa_chinensis	RchiOBHm_Chr1g0355371
rosa_laevigata	RLG00000028134 RLG00000028139 RLG00000028145 RLG00000028149
rosa_multiflora	Rmu_sc0004484.1_g000010 Rmu_sc0021229.1_g000001
rosa_roxburghii	Rroxscaffold_4G00300080 Rroxscaffold_4G00300120 Rroxscaffold_4G00300280 Rroxscaffold_4G00300370 Rroxscaffold_4G00300460
rosa_rugosa	Rorug01G0246900
rosa_samantha	Rh1AG259400 Rh1AG259500 Rh1AG259800 Rh1AG260300 Rh1AG260900 Rh1BG229000 Rh1BG229200 Rh1CG243400 Rh1CG243500 Rh1DG256900
rosa_wichuraiana	Rw1G020180 Rw1G022870 Rw1G022900 Rw1G022920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	886
Acc65I	GGTACC	1 cut(s)	92
AccB1I	GGYRCC	3 cut(s)	92, 206, 343
AccII	CGCG	1 cut(s)	504
AclWI	GGATC	1 cut(s)	674
AcoI	YGGCCR	2 cut(s)	451, 871
AcuI	CTGAAG	1 cut(s)	476
AfaI	GTAC	2 cut(s)	94, 507
AfiI	CCNNNNNNNGG	1 cut(s)	689
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	3 cut(s)	166, 356, 853
AjnI	CCWGG	2 cut(s)	727, 831
AleI	CACNNNNGTG	1 cut(s)	842
AluBI	AGCT	7 cut(s)	28, 143, 160, 359, 380, 815, 924
AluI	AGCT	7 cut(s)	28, 143, 160, 359, 380, 815, 924
Alw26I	GTCTC	1 cut(s)	833
AlwI	GGATC	1 cut(s)	674
AoxI	GGCC	3 cut(s)	288, 451, 871
ApeKI	GCWGC	3 cut(s)	25, 140, 239
Asp718I	GGTACC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	974
AsuHPI	GGTGA	5 cut(s)	212, 475, 635, 725, 829
AsuII	TTCGAA	1 cut(s)	784
BaeGI	GKGCMC	1 cut(s)	348
BalI	TGGCCA	2 cut(s)	453, 873
BanI	GGYRCC	3 cut(s)	92, 206, 343
BauI	CACGAG	1 cut(s)	618
BbsI	GAAGAC	1 cut(s)	177
BbvI	GCAGC	3 cut(s)	37, 152, 251
BccI	CCATC	4 cut(s)	104, 635, 853, 857
BceAI	ACGGC	1 cut(s)	414
BcgI	CGANNNNNNTGC	2 cut(s)	951, 985
BciT130I	CCWGG	2 cut(s)	729, 833
BciVI	GTATCC	1 cut(s)	656
BcoDI	GTCTC	1 cut(s)	833
BfaI	CTAG	2 cut(s)	218, 377
BfmI	CTRYAG	1 cut(s)	694
BfuAI	ACCTGC	1 cut(s)	886
BfuI	GTATCC	1 cut(s)	656
BisI	GCNGC	3 cut(s)	26, 141, 240
BlsI	GCNGC	3 cut(s)	27, 142, 241
Bme1390I	CCNGG	2 cut(s)	729, 833
BmiI	GGNNCC	4 cut(s)	94, 208, 345, 590
BmrFI	CCNGG	2 cut(s)	729, 833
BmsI	GCATC	2 cut(s)	160, 708
BpiI	GAAGAC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	345
Bpu14I	TTCGAA	1 cut(s)	784
BpuEI	CTTGAG	1 cut(s)	500
BsaI	GGTCTC	1 cut(s)	833
BsaJI	CCNNGG	4 cut(s)	234, 463, 668, 683
Bsc4I	CCNNNNNNNGG	1 cut(s)	689
Bse1I	ACTGG	2 cut(s)	54, 210
Bse3DI	GCAATG	3 cut(s)	38, 57, 813
BseBI	CCWGG	2 cut(s)	729, 833
BseDI	CCNNGG	4 cut(s)	234, 463, 668, 683
BseGI	GGATG	4 cut(s)	175, 646, 678, 868
BseLI	CCNNNNNNNGG	1 cut(s)	689
BseMI	GCAATG	3 cut(s)	38, 57, 813
BseNI	ACTGG	2 cut(s)	54, 210
BseSI	GKGCMC	1 cut(s)	348
BseXI	GCAGC	3 cut(s)	37, 152, 251
BsgI	GTGCAG	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	504
BshFI	GGCC	3 cut(s)	290, 453, 873
BshNI	GGYRCC	3 cut(s)	92, 206, 343
BslFI	GGGAC	1 cut(s)	881
BslI	CCNNNNNNNGG	1 cut(s)	689
BsmAI	GTCTC	1 cut(s)	833
BsmFI	GGGAC	1 cut(s)	881
BsnI	GGCC	3 cut(s)	290, 453, 873
Bso31I	GGTCTC	1 cut(s)	833
Bsp119I	TTCGAA	1 cut(s)	784
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	1 cut(s)	679
Bsp19I	CCATGG	1 cut(s)	234
BspANI	GGCC	3 cut(s)	290, 453, 873
BspFNI	CGCG	1 cut(s)	504
BspHI	TCATGA	1 cut(s)	603
BspLI	GGNNCC	4 cut(s)	94, 208, 345, 590
BspMI	ACCTGC	1 cut(s)	886
BspPI	GGATC	1 cut(s)	674
BspT104I	TTCGAA	1 cut(s)	784
BspT107I	GGYRCC	3 cut(s)	92, 206, 343
BspTNI	GGTCTC	1 cut(s)	833
BsrDI	GCAATG	3 cut(s)	38, 57, 813
BsrI	ACTGG	2 cut(s)	54, 210
BssECI	CCNNGG	4 cut(s)	234, 463, 668, 683
BssMI	GATC	1 cut(s)	679
BssSI	CACGAG	1 cut(s)	618
BssT1I	CCWWGG	3 cut(s)	234, 463, 683
Bst2BI	CACGAG	1 cut(s)	618
Bst2UI	CCWGG	2 cut(s)	729, 833
Bst4CI	ACNGT	3 cut(s)	312, 487, 529
Bst6I	CTCTTC	1 cut(s)	786
BstAPI	GCANNNNNTGC	2 cut(s)	128, 954
BstBI	TTCGAA	1 cut(s)	784
BstDEI	CTNAG	2 cut(s)	752, 920
BstDSI	CCRYGG	2 cut(s)	234, 668
BstEII	GGTNACC	1 cut(s)	835
BstF5I	GGATG	4 cut(s)	175, 646, 678, 868
BstFNI	CGCG	1 cut(s)	504
BstHHI	GCGC	1 cut(s)	974
BstKTI	GATC	1 cut(s)	682
BstMAI	GTCTC	1 cut(s)	833
BstMBI	GATC	1 cut(s)	679
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 137, 157, 812, 954
BstNI	CCWGG	2 cut(s)	729, 833
BstNSI	RCATGY	2 cut(s)	194, 948
BstPI	GGTNACC	1 cut(s)	835
BstSCI	CCNGG	2 cut(s)	727, 831
BstSFI	CTRYAG	1 cut(s)	694
BstSLI	GKGCMC	1 cut(s)	348
BstUI	CGCG	1 cut(s)	504
BstV1I	GCAGC	3 cut(s)	37, 152, 251
BstV2I	GAAGAC	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	656
BsuRI	GGCC	3 cut(s)	290, 453, 873
BtgI	CCRYGG	2 cut(s)	234, 668
BtsCI	GGATG	4 cut(s)	175, 646, 678, 868
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	3 cut(s)	47, 426, 473
BveI	ACCTGC	1 cut(s)	886
CciI	TCATGA	1 cut(s)	603
CfoI	GCGC	1 cut(s)	974
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	93, 506
CviQI	GTAC	2 cut(s)	93, 506
DdeI	CTNAG	2 cut(s)	752, 920
DpnI	GATC	1 cut(s)	681
DpnII	GATC	1 cut(s)	679
DraI	TTTAAA	1 cut(s)	316
EaeI	YGGCCR	2 cut(s)	451, 871
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
Eco130I	CCWWGG	3 cut(s)	234, 463, 683
Eco31I	GGTCTC	1 cut(s)	833
Eco32I	GATATC	1 cut(s)	460
Eco57I	CTGAAG	1 cut(s)	476
Eco91I	GGTNACC	1 cut(s)	835
EcoO65I	GGTNACC	1 cut(s)	835
EcoRII	CCWGG	2 cut(s)	727, 831
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	3 cut(s)	234, 463, 683
EcoT22I	ATGCAT	1 cut(s)	950
ErhI	CCWWGG	3 cut(s)	234, 463, 683
FalI	AAGNNNNNCTT	4 cut(s)	332, 364, 447, 479
FaqI	GGGAC	1 cut(s)	881
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	3 cut(s)	26, 141, 240
FokI	GGATG	4 cut(s)	182, 653, 685, 875
Fsp4HI	GCNGC	3 cut(s)	26, 141, 240
FspBI	CTAG	2 cut(s)	218, 377
GlaI	GCGC	1 cut(s)	973
GluI	GCNGC	3 cut(s)	26, 141, 240
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	3 cut(s)	290, 453, 873
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	974
Hin6I	GCGC	1 cut(s)	972
HinP1I	GCGC	1 cut(s)	972
HincII	GTYRAC	2 cut(s)	55, 768
HindII	GTYRAC	2 cut(s)	55, 768
HindIII	AAGCTT	1 cut(s)	922
HinfI	GANTC	5 cut(s)	182, 329, 511, 778, 916
HphI	GGTGA	5 cut(s)	212, 475, 635, 725, 829
Hpy166II	GTNNAC	3 cut(s)	47, 55, 768
Hpy188I	TCNGA	4 cut(s)	178, 308, 495, 962
Hpy188III	TCNNGA	2 cut(s)	274, 604
Hpy8I	GTNNAC	3 cut(s)	47, 55, 768
HpyAV	CCTTC	5 cut(s)	160, 191, 197, 358, 400
HpyCH4III	ACNGT	3 cut(s)	312, 487, 529
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	7 cut(s)	25, 62, 122, 131, 396, 473, 948
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 137, 157, 812, 954
HpyF3I	CTNAG	2 cut(s)	752, 920
HpySE526I	ACGT	1 cut(s)	319
HspAI	GCGC	1 cut(s)	972
KpnI	GGTACC	1 cut(s)	96
Kzo9I	GATC	1 cut(s)	679
LmnI	GCTCC	1 cut(s)	391
Lsp1109I	GCAGC	3 cut(s)	37, 152, 251
LweI	GCATC	2 cut(s)	160, 708
MaeI	CTAG	2 cut(s)	218, 377
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	3 cut(s)	791, 835, 940
MalI	GATC	1 cut(s)	681
MboI	GATC	1 cut(s)	679
MboII	GAAGA	5 cut(s)	177, 482, 524, 553, 773
MhlI	GDGCHC	1 cut(s)	348
MlsI	TGGCCA	2 cut(s)	453, 873
MluCI	AATT	3 cut(s)	7, 243, 977
MluNI	TGGCCA	2 cut(s)	453, 873
MlyI	GAGTC	2 cut(s)	191, 772
MmeI	TCCRAC	2 cut(s)	502, 985
MnlI	CCTC	3 cut(s)	225, 631, 968
Mox20I	TGGCCA	2 cut(s)	453, 873
Mph1103I	ATGCAT	1 cut(s)	950
MscI	TGGCCA	2 cut(s)	453, 873
MseI	TTAA	2 cut(s)	315, 339
MslI	CAYNNNNRTG	3 cut(s)	597, 608, 842
Msp20I	TGGCCA	2 cut(s)	453, 873
MspR9I	CCNGG	2 cut(s)	729, 833
MssI	GTTTAAAC	1 cut(s)	316
MvaI	CCWGG	2 cut(s)	729, 833
MvnI	CGCG	1 cut(s)	504
MwoI	GCNNNNNNNGC	5 cut(s)	128, 137, 157, 812, 954
NcoI	CCATGG	1 cut(s)	234
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	1 cut(s)	679
NlaIV	GGNNCC	4 cut(s)	94, 208, 345, 590
NmuCI	GTSAC	1 cut(s)	835
NsiI	ATGCAT	1 cut(s)	950
NspI	RCATGY	2 cut(s)	194, 948
NspV	TTCGAA	1 cut(s)	784
OliI	CACNNNNGTG	1 cut(s)	842
PagI	TCATGA	1 cut(s)	603
PciI	ACATGT	1 cut(s)	190
PcsI	WCGNNNNNNNCGW	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	329, 511, 916
PkrI	GCNGC	3 cut(s)	27, 142, 241
PleI	GAGTC	2 cut(s)	190, 772
PmeI	GTTTAAAC	1 cut(s)	316
PpsI	GAGTC	2 cut(s)	190, 772
PscI	ACATGT	1 cut(s)	190
Psp6I	CCWGG	2 cut(s)	727, 831
PspEI	GGTNACC	1 cut(s)	835
PspGI	CCWGG	2 cut(s)	727, 831
PspN4I	GGNNCC	4 cut(s)	94, 208, 345, 590
RsaI	GTAC	2 cut(s)	94, 507
RsaNI	GTAC	2 cut(s)	93, 506
RseI	CAYNNNNRTG	3 cut(s)	597, 608, 842
SaqAI	TTAA	2 cut(s)	315, 339
SatI	GCNGC	3 cut(s)	26, 141, 240
Sau3AI	GATC	1 cut(s)	679
SchI	GAGTC	2 cut(s)	191, 772
ScrFI	CCNGG	2 cut(s)	729, 833
SduI	GDGCHC	1 cut(s)	348
SfaNI	GCATC	2 cut(s)	160, 708
SfcI	CTRYAG	1 cut(s)	694
SfuI	TTCGAA	1 cut(s)	784
SmiMI	CAYNNNNRTG	3 cut(s)	597, 608, 842
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	3 cut(s)	7, 243, 977
SspMI	CTAG	2 cut(s)	218, 377
StyD4I	CCNGG	2 cut(s)	727, 831
StyI	CCWWGG	3 cut(s)	234, 463, 683
TaaI	ACNGT	3 cut(s)	312, 487, 529
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	1 cut(s)	784
TasI	AATT	3 cut(s)	7, 243, 977
TfiI	GAWTC	3 cut(s)	329, 511, 916
Tru1I	TTAA	2 cut(s)	315, 339
Tru9I	TTAA	2 cut(s)	315, 339
TscAI	CASTG	3 cut(s)	54, 426, 480
TseFI	GTSAC	1 cut(s)	835
TseI	GCWGC	3 cut(s)	25, 140, 239
Tsp45I	GTSAC	1 cut(s)	835
TspDTI	ATGAA	4 cut(s)	17, 255, 354, 973
TspGWI	ACGGA	1 cut(s)	685
TspRI	CASTG	3 cut(s)	54, 426, 480
XceI	RCATGY	2 cut(s)	194, 948
XcmI	CCANNNNNNNNNTGG	2 cut(s)	217, 461
XspI	CTAG	2 cut(s)	218, 377
Zsp2I	ATGCAT	1 cut(s)	950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.