AT1G01760

adenosine deaminase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005289
Physical Location & Seq
Reverse (-)
276266 .. 278599
2334 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01760.1

Sequence Viewer

Length: 1263 bp
ATGGAGGAGGATTGGGGAAAGACAGTATCAGAGAAGGTTATTTCGGCTTACATGTCTCTCCCGAAGAAGGGAAAACCTCAGGGACGTGAAGTCACCGTCCTCTCCGCTTTCCTCGTCTCTTCTCCTTCCCAAGACCCGAAAGTGATAGCGTTAGGGACGGGGACCAAGTGCGTTAGTGGGTCGCTGCTGAGTCCCCGTGGGGACATTGTGAACGATTCTCATGCCGAAGTTGTCGCCAGAAGAGCTCTCATCAGGTTCTTCTATTCCGAGATTCAGCGGATGCAATTGACTTCAGGTAAGAGTAATGAAGCCAAGCGTCAGAGAATTGATAGCGAAACAAGCTCAATACTAGAGTCAGCAGATTCAAGCTGTCCTGGAGAAGTCAAATATAAGCTCAAATCTGGGTGCCTCTTGCATTTGTACATTTCTCAATTGCCATGTGGTTATGCTTCTACTAGTTCACCCTTGTATGCCCTGAAAAAGATTCCATCAACACAAGTAGATGACTCATTGTTAGTTCAAGCTTCTGATATTTGCTCGTCTCGGCATTCTGATGTTCCAGAGATAGGTAGTAATAGCAACAAAGGTAATGGCTCACAAGTAGCAGATATGGTGCAAAGAAAGCCTGGTCGCGGTGAAACAACACTCTCTGTTAGCTGTTCGGATAAGATAGCTCGATGGAATGTTCTTGGAGTTCAAGGGGCATTGCTTTACCAAGTCCTCCAGCCTGTGTATATTTCTACCATCACCGTTGGACAATCTCTGCACAGTCCTGACAATTTTTCTTTAGCTGATCACTTGCGAAGATCTTTGTATGAGAGGATCCTCCCATTATCGGATGAACTTCTGACTTCCTTCCGTTTGAACAAGCCACTGTTTTTTGTAGCTCCAGTACCACCATCAGAGTTTCAGCATTCAGAAACTGCGCAAGCTACTTTAACATGCGGATATTCCTTGTGTTGGAACTATTCTGGCTTACACGAAGTTATTCTTGGAACAACCGGTAGAAAGCAAGGCACATCAGCTAAAGGAGCTCTGTATCCGTCTACTCAATCATCTATATGCAAACAGCGGTTACTGGAGCTATTCTTGAAAGAAACTCATGGACACAAAAGGGAATCTTCCAAGTCAAAAAAATCGTACCGAGAACTGAAGAACAAAGCTACGGAATATTATTTGATGTCAAAGATTTTTAAAGGAAAGTATCCATTCAACAATTGGCTAAGAAAACCCTTGAATTGCGAGGATTTTCTGATAAATTAG

Protein Analysis

420

Amino Acids

46.49

Weight (kDa)

9.21

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_deamin PF02137 50 - 411 9e-86 Adenosine-deaminase (editase) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 927
AccB1I GGYRCC 1 cut(s) 405
AccI GTMKAC 1 cut(s) 1046
AccII CGCG 1 cut(s) 633
AciI CCGC 5 cut(s) 105, 277, 633, 945, 1072
AclWI GGATC 2 cut(s) 817, 830
AcuI CTGAAG 2 cut(s) 276, 1172
AfaI GTAC 3 cut(s) 422, 894, 1142
AfiI CCNNNNNNNGG 6 cut(s) 67, 68, 566, 632, 835, 960
AflIII ACRYGT 1 cut(s) 51
AgeI ACCGGT 1 cut(s) 1001
AgsI TTSAA 7 cut(s) 366, 521, 698, 865, 1093, 1213, 1237
AhdI GACNNNNNGTC 1 cut(s) 89
AhlI ACTAGT 1 cut(s) 455
AjiI CACGTC 1 cut(s) 86
AjnI CCWGG 2 cut(s) 373, 625
AjuI GAANNNNNNNTTGG 2 cut(s) 975, 1007
Alw21I GWGCWC 2 cut(s) 247, 1036
Alw26I GTCTC 3 cut(s) 60, 121, 546
AlwI GGATC 2 cut(s) 817, 830
AlwNI CAGNNNCTG 1 cut(s) 923
ApeKI GCWGC 1 cut(s) 184
AsiGI ACCGGT 1 cut(s) 1001
Asp700I GAANNNNTTC 1 cut(s) 987
AspLEI GCGC 1 cut(s) 928
AspS9I GGNCC 1 cut(s) 162
AsuHPI GGTGA 4 cut(s) 85, 453, 647, 739
AvaII GGWCC 1 cut(s) 162
AxyI CCTNAGG 1 cut(s) 78
BamHI GGATCC 1 cut(s) 822
BanI GGYRCC 1 cut(s) 405
BanII GRGCYC 2 cut(s) 247, 1036
Bbv12I GWGCWC 2 cut(s) 247, 1036
BbvI GCAGC 1 cut(s) 171
BccI CCATC 4 cut(s) 496, 672, 752, 907
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciT130I CCWGG 2 cut(s) 375, 627
BciVI GTATCC 2 cut(s) 1050, 1215
BclI TGATCA 1 cut(s) 793
BcoDI GTCTC 3 cut(s) 60, 121, 546
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 2 cut(s) 350, 456
BfuI GTATCC 2 cut(s) 1050, 1215
BglII AGATCT 1 cut(s) 806
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme1390I CCNGG 2 cut(s) 375, 627
Bme18I GGWCC 1 cut(s) 162
BmeRI GACNNNNNGTC 1 cut(s) 89
BmgBI CACGTC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 3 cut(s) 163, 407, 824
BmrFI CCNGG 2 cut(s) 375, 627
BmsI GCATC 1 cut(s) 270
BpmI CTGGAG 4 cut(s) 396, 707, 873, 1100
BsaJI CCNNGG 1 cut(s) 196
BsaWI WCCGGW 1 cut(s) 1001
Bsc4I CCNNNNNNNGG 6 cut(s) 67, 68, 566, 632, 835, 960
Bse118I RCCGGY 1 cut(s) 1001
Bse1I ACTGG 2 cut(s) 890, 1083
Bse21I CCTNAGG 1 cut(s) 78
Bse3DI GCAATG 1 cut(s) 704
BseBI CCWGG 2 cut(s) 375, 627
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 2 cut(s) 285, 844
BseLI CCNNNNNNNGG 6 cut(s) 67, 68, 566, 632, 835, 960
BseMI GCAATG 1 cut(s) 704
BseMII CTCAG 2 cut(s) 92, 179
BseNI ACTGG 2 cut(s) 890, 1083
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 171
BsgI GTGCAG 1 cut(s) 749
Bsh1236I CGCG 1 cut(s) 633
BshNI GGYRCC 1 cut(s) 405
BshTI ACCGGT 1 cut(s) 1001
BsiHKAI GWGCWC 2 cut(s) 247, 1036
BsiSI CCGG 1 cut(s) 1002
BslFI GGGAC 5 cut(s) 96, 169, 175, 177, 215
BslI CCNNNNNNNGG 6 cut(s) 67, 68, 566, 632, 835, 960
BsmAI GTCTC 3 cut(s) 60, 121, 546
BsmBI CGTCTC 2 cut(s) 121, 546
BsmFI GGGAC 5 cut(s) 96, 169, 175, 177, 215
BsmI GAATGC 2 cut(s) 547, 913
Bsp1286I GDGCHC 2 cut(s) 247, 1036
Bsp1407I TGTACA 1 cut(s) 420
Bsp143I GATC 3 cut(s) 793, 806, 822
BspACI CCGC 5 cut(s) 105, 277, 633, 945, 1072
BspCNI CTCAG 2 cut(s) 91, 180
BspFNI CGCG 1 cut(s) 633
BspLI GGNNCC 3 cut(s) 163, 407, 824
BspPI GGATC 2 cut(s) 817, 830
BspQI GCTCTTC 1 cut(s) 235
BspT107I GGYRCC 1 cut(s) 405
BsrDI GCAATG 1 cut(s) 704
BsrFI RCCGGY 1 cut(s) 1001
BsrGI TGTACA 1 cut(s) 420
BsrI ACTGG 2 cut(s) 890, 1083
BssAI RCCGGY 1 cut(s) 1001
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 3 cut(s) 793, 806, 822
Bst2UI CCWGG 2 cut(s) 375, 627
Bst4CI ACNGT 5 cut(s) 25, 97, 751, 770, 876
Bst6I CTCTTC 2 cut(s) 124, 235
BstAUI TGTACA 1 cut(s) 420
BstC8I GCNNGC 1 cut(s) 930
BstDEI CTNAG 3 cut(s) 78, 188, 1223
BstDSI CCRYGG 1 cut(s) 196
BstF5I GGATG 2 cut(s) 285, 844
BstFNI CGCG 1 cut(s) 633
BstHHI GCGC 1 cut(s) 928
BstKTI GATC 3 cut(s) 796, 809, 825
BstMAI GTCTC 3 cut(s) 60, 121, 546
BstMBI GATC 3 cut(s) 793, 806, 822
BstMWI GCNNNNNNNGC 4 cut(s) 242, 339, 622, 1031
BstNI CCWGG 2 cut(s) 375, 627
BstNSI RCATGY 2 cut(s) 55, 945
BstSCI CCNGG 2 cut(s) 373, 625
BstUI CGCG 1 cut(s) 633
BstV1I GCAGC 1 cut(s) 171
BstX2I RGATCY 2 cut(s) 806, 822
BstYI RGATCY 2 cut(s) 806, 822
Bsu36I CCTNAGG 1 cut(s) 78
BsuI GTATCC 2 cut(s) 1050, 1215
BtgI CCRYGG 1 cut(s) 196
BtrI CACGTC 1 cut(s) 86
BtsCI GGATG 2 cut(s) 285, 844
BtsIMutI CAGTG 1 cut(s) 872
Cac8I GCNNGC 1 cut(s) 930
CaiI CAGNNNCTG 1 cut(s) 923
CfoI GCGC 1 cut(s) 928
Cfr10I RCCGGY 1 cut(s) 1001
Cfr13I GGNCC 1 cut(s) 162
CseI GACGC 1 cut(s) 305
Csp6I GTAC 3 cut(s) 421, 893, 1141
CspAI ACCGGT 1 cut(s) 1001
CviAII CATG 5 cut(s) 52, 221, 438, 942, 1103
CviQI GTAC 3 cut(s) 421, 893, 1141
DdeI CTNAG 3 cut(s) 78, 188, 1223
DpnI GATC 3 cut(s) 795, 808, 824
DpnII GATC 3 cut(s) 793, 806, 822
DraI TTTAAA 1 cut(s) 1195
DriI GACNNNNNGTC 1 cut(s) 89
Eam1104I CTCTTC 2 cut(s) 124, 235
Eam1105I GACNNNNNGTC 1 cut(s) 89
EarI CTCTTC 2 cut(s) 124, 235
Ecl136II GAGCTC 2 cut(s) 245, 1034
Eco24I GRGCYC 2 cut(s) 247, 1036
Eco47I GGWCC 1 cut(s) 162
Eco53kI GAGCTC 2 cut(s) 245, 1034
Eco57I CTGAAG 2 cut(s) 276, 1172
Eco81I CCTNAGG 1 cut(s) 78
EcoICRI GAGCTC 2 cut(s) 245, 1034
EcoRII CCWGG 2 cut(s) 373, 625
EcoT38I GRGCYC 2 cut(s) 247, 1036
Esp3I CGTCTC 2 cut(s) 121, 546
FaeI CATG 5 cut(s) 55, 224, 441, 945, 1106
FalI AAGNNNNNCTT 4 cut(s) 975, 1007, 1105, 1137
FaqI GGGAC 5 cut(s) 96, 169, 175, 177, 215
FatI CATG 5 cut(s) 51, 220, 437, 941, 1102
FbaI TGATCA 1 cut(s) 793
FblI GTMKAC 1 cut(s) 1046
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 2 cut(s) 292, 851
FriOI GRGCYC 2 cut(s) 247, 1036
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 2 cut(s) 350, 456
FspI TGCGCA 1 cut(s) 927
GlaI GCGC 1 cut(s) 927
GluI GCNGC 1 cut(s) 185
GsuI CTGGAG 4 cut(s) 396, 707, 873, 1100
HapII CCGG 1 cut(s) 1002
HgaI GACGC 1 cut(s) 305
HhaI GCGC 1 cut(s) 928
Hin1II CATG 5 cut(s) 55, 224, 441, 945, 1106
Hin6I GCGC 1 cut(s) 926
HinP1I GCGC 1 cut(s) 926
HindIII AAGCTT 1 cut(s) 522
HinfI GANTC 8 cut(s) 190, 215, 271, 353, 362, 484, 506, 1118
HpaII CCGG 1 cut(s) 1002
HphI GGTGA 4 cut(s) 85, 453, 647, 739
Hpy166II GTNNAC 3 cut(s) 211, 461, 1047
Hpy188III TCNNGA 4 cut(s) 61, 560, 773, 1090
Hpy8I GTNNAC 3 cut(s) 211, 461, 1047
HpyAV CCTTC 4 cut(s) 28, 61, 135, 865
HpyCH4III ACNGT 5 cut(s) 25, 97, 751, 770, 876
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 5 cut(s) 283, 415, 616, 766, 1065
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 339, 622, 1031
HpyF3I CTNAG 3 cut(s) 78, 188, 1223
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 5 cut(s) 55, 224, 441, 945, 1106
HspAI GCGC 1 cut(s) 926
Ksp22I TGATCA 1 cut(s) 793
Kzo9I GATC 3 cut(s) 793, 806, 822
LguI GCTCTTC 1 cut(s) 235
LmnI GCTCC 3 cut(s) 892, 1031, 1081
Lsp1109I GCAGC 1 cut(s) 171
LweI GCATC 1 cut(s) 270
MaeI CTAG 2 cut(s) 350, 456
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 2 cut(s) 91, 1074
MalI GATC 3 cut(s) 795, 808, 824
MboI GATC 3 cut(s) 793, 806, 822
MboII GAAGA 7 cut(s) 76, 111, 250, 252, 816, 1113, 1165
MfeI CAATTG 3 cut(s) 284, 431, 1216
MflI RGATCY 2 cut(s) 806, 822
MhlI GDGCHC 2 cut(s) 247, 1036
MluCI AATT 7 cut(s) 284, 324, 431, 778, 1216, 1237, 1258
MlyI GAGTC 3 cut(s) 199, 362, 500
MmeI TCCRAC 2 cut(s) 733, 941
MnlI CCTC 8 cut(s) 87, 110, 122, 419, 731, 813, 836, 1237
MroXI GAANNNNTTC 1 cut(s) 987
MseI TTAA 2 cut(s) 938, 1194
MslI CAYNNNNRTG 2 cut(s) 552, 1060
MspA1I CMGCKG 2 cut(s) 277, 1072
MspI CCGG 1 cut(s) 1002
MspR9I CCNGG 2 cut(s) 375, 627
MunI CAATTG 3 cut(s) 284, 431, 1216
Mva1269I GAATGC 2 cut(s) 547, 913
MvaI CCWGG 2 cut(s) 375, 627
MvnI CGCG 1 cut(s) 633
MwoI GCNNNNNNNGC 4 cut(s) 242, 339, 622, 1031
NdeII GATC 3 cut(s) 793, 806, 822
NlaIII CATG 5 cut(s) 55, 224, 441, 945, 1106
NlaIV GGNNCC 3 cut(s) 163, 407, 824
NmeAIII GCCGAG 1 cut(s) 523
NmuCI GTSAC 1 cut(s) 91
NsbI TGCGCA 1 cut(s) 927
NspI RCATGY 2 cut(s) 55, 945
PciI ACATGT 1 cut(s) 51
PciSI GCTCTTC 1 cut(s) 235
PctI GAATGC 2 cut(s) 547, 913
PdmI GAANNNNTTC 1 cut(s) 987
PfeI GAWTC 5 cut(s) 215, 271, 362, 484, 1118
PfoI TCCNGGA 1 cut(s) 373
PinAI ACCGGT 1 cut(s) 1001
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 3 cut(s) 198, 361, 500
PpsI GAGTC 3 cut(s) 198, 361, 500
PscI ACATGT 1 cut(s) 51
Psp124BI GAGCTC 2 cut(s) 247, 1036
Psp6I CCWGG 2 cut(s) 373, 625
PspGI CCWGG 2 cut(s) 373, 625
PspN4I GGNNCC 3 cut(s) 163, 407, 824
PspPI GGNCC 1 cut(s) 162
PstNI CAGNNNCTG 1 cut(s) 923
PsuI RGATCY 2 cut(s) 806, 822
RsaI GTAC 3 cut(s) 422, 894, 1142
RsaNI GTAC 3 cut(s) 421, 893, 1141
RseI CAYNNNNRTG 2 cut(s) 552, 1060
SacI GAGCTC 2 cut(s) 247, 1036
SapI GCTCTTC 1 cut(s) 235
SaqAI TTAA 2 cut(s) 938, 1194
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 3 cut(s) 793, 806, 822
Sau96I GGNCC 1 cut(s) 162
SchI GAGTC 3 cut(s) 199, 362, 500
ScrFI CCNGG 2 cut(s) 375, 627
SduI GDGCHC 2 cut(s) 247, 1036
SfaNI GCATC 1 cut(s) 270
SinI GGWCC 1 cut(s) 162
SmiMI CAYNNNNRTG 2 cut(s) 552, 1060
SpeI ACTAGT 1 cut(s) 455
Sse9I AATT 7 cut(s) 284, 324, 431, 778, 1216, 1237, 1258
SsiI CCGC 5 cut(s) 105, 277, 633, 945, 1072
SspI AATATT 1 cut(s) 1172
SspMI CTAG 2 cut(s) 350, 456
SstI GAGCTC 2 cut(s) 247, 1036
StyD4I CCNGG 2 cut(s) 373, 625
TaaI ACNGT 5 cut(s) 25, 97, 751, 770, 876
TaiI ACGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 676
TasI AATT 7 cut(s) 284, 324, 431, 778, 1216, 1237, 1258
TatI WGTACW 1 cut(s) 420
TfiI GAWTC 5 cut(s) 215, 271, 362, 484, 1118
Tru1I TTAA 2 cut(s) 938, 1194
Tru9I TTAA 2 cut(s) 938, 1194
TscAI CASTG 1 cut(s) 879
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 321, 855
TspGWI ACGGA 3 cut(s) 848, 1032, 1181
TspRI CASTG 1 cut(s) 879
VpaK11BI GGWCC 1 cut(s) 162
XceI RCATGY 2 cut(s) 55, 945
XcmI CCANNNNNNNNNTGG 1 cut(s) 1215
XmiI GTMKAC 1 cut(s) 1046
XmnI GAANNNNTTC 1 cut(s) 987
XspI CTAG 2 cut(s) 350, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.